jbhiatt's subassemblypaper [29 articles] Export

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	Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models [My Copy] Nature Methods, Vol. 6, No. 9. (02 August 2009), pp. 673-676. by Arthur Brady, Steven L. Salzberg posted to subassemblypaper method metagenomics math computational by jbhiatt on 2009-08-18 22:31:22 as along with 7 people and 4 groups azazello robertrentzsch dakelley skembel Thaverkamp sharpton stajich Orengo Group Journal Picks iSEEM Journal picks Mycology
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to computational sequencing subassemblypaper by jbhiatt on 2009-07-31 00:49:27 as along with 39 people and 2 groups Julien_Fayolle seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to computational subassemblypaper by jbhiatt on 2009-07-31 00:25:30 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser yylin mgomes BioNica idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen [My Copy] Nature, Vol. 406, No. 6799. (31 August 2000), pp. 959-964. by C. K. Stover, X. Q. Pham, A. L. Erwin, et al.S. D. Mizoguchi, P. Warrener, M. J. Hickey, Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. W. Hancock, S. Lory, M. V. Olson posted to infectious sequencing subassemblypaper by jbhiatt on 2009-07-31 00:21:49 as along with 3 people and 1 group treangen beatrizfernandez bakakaj Microbial-Ecology
	Base-Calling of Automated Sequencer Traces UsingPhred. II. Error Probabilities [My Copy] Genome Research, Vol. 8, No. 3. (1 March 1998), pp. 186-194. by Brent Ewing, Phil Green posted to assembly computational subassemblypaper by jbhiatt on 2009-07-30 22:15:06 as along with 5 people and 2 groups tfuji balajis indigoviolet giovanni bozdagd Bioinformatics EisenLab
	A case study in genome-level fragment assembly. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 6. (1 June 2000), pp. 494-500. by T. Chen, S. S. Skiena posted to assembly subassemblypaper by jbhiatt on 2009-07-29 23:55:00 as along with 1 person neveaire
	Microbial community profiling for human microbiome projects: Tools, techniques, and challenges [My Copy] Genome Research, Vol. 19, No. 7. (21 July 2009), pp. 1141-1152. by Micah Hamady, Rob Knight posted to metagenomics subassemblypaper by jbhiatt on 2009-07-29 23:15:33 as along with 6 people and 2 groups dakelley skembel sharpton djkt ppgardne neils iSEEM Journal picks
	Metagenomics: Read Length Matters [My Copy] Appl. Environ. Microbiol., Vol. 74, No. 5. (1 March 2008), pp. 1453-1463. by K. Eric Wommack, Jaysheel Bhavsar, Jacques Ravel posted to metagenomics subassemblypaper by jbhiatt on 2009-07-29 22:58:43 as along with 11 people and 4 groups skembel vaulot djkt jmeppley azazello Thaverkamp skato_toyaku rvgomes alexisfjdufresne alexl bluto Papers recommended by the Roscoff Plankton Group iSEEM Microbial-Ecology microbiology_nijmegen
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to subassemblypaper threestar by jbhiatt on 2009-07-29 22:10:14 as along with 16 people and 3 groups torfinnnome hzoltan darian debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus Journal picks JLab BergmanLab
	The Human Microbiome Project [My Copy] Nature, Vol. 449, No. 7164. (18 October 2007), pp. 804-810. by Peter J. Turnbaugh, Ruth E. Ley, Micah Hamady, Claire M. Fraser-Liggett, Rob Knight, Jeffrey I. Gordon posted to commentary fourstar subassemblypaper by jbhiatt on 2009-07-22 07:16:06 as along with 5 people kerri3278 Zephyrus guhjy wenhan carpi
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly fourstar subassemblypaper by jbhiatt on 2009-07-22 01:18:53 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to assembly fourstar subassemblypaper by jbhiatt on 2009-07-22 01:18:41 as along with 13 people katholt jsatkosk AaronDarling floatingpoint idoerg caseybrown druvus natstreet azazello iris42 nmohelli Neeperando yoonk
	Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation [My Copy] Nat Meth, Vol. 2, No. 2. (09 February 2005), pp. 105-111. by Patrick Ng, Chia-Lin Wei, Wing-Kin Sung, et al.Kuo P. Chiu, Leonard Lipovich, Chin C. Ang, Sanjay Gupta, Atif Shahab, Azmi Ridwan, Chee H. Wong, Edison T. Liu, Yijun Ruan posted to fourstar multiplexing subassemblypaper transcriptomics by jbhiatt on 2009-07-21 22:53:21 as along with 3 people and 1 group guhjy kengg olympos Plantandetc
	Large-scale mRNA sequencing determines global regulation of RNA editing during brain development [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 978-986. by Helene Wahlstedt, Chammiran Daniel, Mats EnsterÃ¶, Marie Ãhman posted to 454 fourstar sequencing subassemblypaper transcriptomics by jbhiatt on 2009-05-13 22:02:34 as along with 2 people t09304mk hagechouchin443
	Metatranscriptomics reveals unique microbial small RNAs in the ocean\|[rsquo]\|s water column [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 266-269. by Yanmei Shi, Gene W. Tyson, Edward F. DeLong posted to fivestar metagenomics rnai subass subassemblypaper transcriptomics by jbhiatt on 2009-05-13 20:00:42 as along with 13 people and 4 groups tonamswish kinestetika gdb michaelbarton samgj vaulot Katje absterga jmeppley Thaverkamp pengchy djkt skembel Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen iSEEM
	High-Throughput Sequencing of the Zebrafish Antibody Repertoire [My Copy] Science, Vol. 324, No. 5928. (8 May 2009), pp. 807-810. by Joshua A. Weinstein, Ning Jiang, Richard A. White, Daniel S. Fisher, Stephen R. Quake posted to fivestar immunology method sequencing subassemblypaper by jbhiatt on 2009-05-08 06:10:36 as along with 7 people jonilaserson guhjy gbloeb absterga reyez katiehumphry pineapple
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly computational fivestar method sequencing subassemblypaper by jbhiatt on 2009-03-05 21:58:51 as along with 26 people and 2 groups jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan stajich erikarner BergmanLab Mycology
	Metagenomic Analysis of the Human Distal Gut Microbiome [My Copy] Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359. by Steven R. Gill, Mihai Pop, Robert T. DeBoy, et al.Paul B. Eckburg, Peter J. Turnbaugh, Buck S. Samuel, Jeffrey I. Gordon, David A. Relman, Claire M. Fraser-Liggett, Karen E. Nelson posted to fourstar medical metagenomics sequencing subassemblypaper by jbhiatt on 2009-02-13 17:36:38 as along with 22 people and 9 groups cmzmasek Thaverkamp windman83 Zephyrus vvoorr skembel Yanno ana dayjm jmeppley dchughes cmm neveaire hcmorton michC bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
	Sequencing and Analyses of All Known Human Rhinovirus Genomes Reveals Structure and Evolution [My Copy] Science (12 February 2009), 1165557. by Ann C. Palmenberg, David Spiro, Ryan Kuzmickas, et al.Shiliang Wang, Appolinaire Djikeng, Jennifer A. Rathe, Claire M. Fraser-Liggett, Stephen B. Liggett posted to fourstar medical metagenomics method sequencing subassemblypaper by jbhiatt on 2009-02-13 02:16:05 as along with 11 people and 1 group memerman coela zwang renatomilani farhat sen_cheng VGreiff wsjames neils ianholmes kshundyak Oxford Virology
	Microbial diversity in the deep sea and the underexplored "rare biosphere". [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 32. (8 August 2006), pp. 12115-12120. by Mitchell L. Sogin, Hilary G. Morrison, Julie A. Huber, et al.David Mark Welch, Susan M. Huse, Phillip R. Neal, Jesus M. Arrieta, Gerhard J. Herndl posted to fourstar metagenomics method sequencing subassemblypaper by jbhiatt on 2009-02-12 18:58:02 as along with 12 people and 2 groups hwright skembel skato_toyaku jmeppley balicea madhadron rabu bluto xingxu kinestetika mcox Olaf_Ilzins iSEEM microbiology_nijmegen
	The long march: a sample preparation technique that enhances contig length and coverage by high-throughput short-read sequencing. [My Copy] PloS one, Vol. 3, No. 10. (2008) by K. Sorber, C. Chiu, D. Webster, et al.M. Dimon, J. G. Ruby, A. Hekele, J. L. DeRisi posted to fivestar metagenomics sequencing subassemblypaper by jbhiatt on 2009-02-10 18:19:38 as along with 2 people michaelbarton GeeSharpMinor
	High-resolution metagenomics targets specific functional types in complex microbial communities [My Copy] Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1029-1034. by Marina G. Kalyuzhnaya, Alla Lapidus, Natalia Ivanova, et al.Alex C. Copeland, Alice C. Mchardy, Ernest Szeto, Asaf Salamov, Igor V. Grigoriev, Dominic Suciu, Samuel R. Levine, Victor M. Markowitz, Isidore Rigoutsos, Susannah G. Tringe, David C. Bruce, Paul M. Richardson, Mary E. Lidstrom, Ludmila Chistoserdova posted to fivestar metagenomics method sequencing subassemblypaper by jbhiatt on 2009-02-01 19:21:59 as along with 10 people and 2 groups sameersoi Thaverkamp EKotlarska jmeppley sriesenfeld skembel apostola Katje Huub_odc zwang Microbial-Ecology microbiology_nijmegen
	A core gut microbiome in obese and lean twins [My Copy] Nature (30 November 2008) by Peter J. Turnbaugh, Micah Hamady, Tanya Yatsunenko, et al.Brandi L. Cantarel, Alexis Duncan, Ruth E. Ley, Mitchell L. Sogin, William J. Jones, Bruce A. Roe, Jason P. Affourtit, Michael Egholm, Bernard Henrissat, Andrew C. Heath, Rob Knight, Jeffrey I. Gordon posted to fivestar metagenomics sequencing subassemblypaper by jbhiatt on 2009-01-21 20:26:53 as along with 10 people and 2 groups jmeppley Thaverkamp azazello skembel idoerg slevy03 booker djkt Zephyrus guhjy Microbial-Ecology iSEEM
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly fivestar sequencing subassemblypaper by jbhiatt on 2008-12-17 20:50:12 as along with 17 people and 1 group n00c carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli druvus hpaces GustavoLacerda stajich Mycology
	Next-generation DNA sequencing. [My Copy] Nature biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to fivestar geneticspaper review sequencing subassemblypaper by jbhiatt on 2008-12-16 22:38:35 as along with 46 people and 3 groups Jporci daforerog dchughes hzoltan cthachuk giovenko heliopais seb1 installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	Environmental Genome Shotgun Sequencing of the Sargasso Sea [My Copy] Science, Vol. 304, No. 5667. (2 April 2004), pp. 66-74. by J. Craig Venter, Karin Remington, John F. Heidelberg, et al.Aaron L. Halpern, Doug Rusch, Jonathan A. Eisen, Dongying Wu, Ian Paulsen, Karen E. Nelson, William Nelson, Derrick E. Fouts, Samuel Levy, Anthony H. Knap, Michael W. Lomas, Ken Nealson, Owen White, Jeremy Peterson, Jeff Hoffman, Rachel Parsons, Holly Baden-Tillson, Cynthia Pfannkoch, Yu-Hui Rogers, Hamilton O. Smith posted to fivestar metagenomics sequencing subassemblypaper by jbhiatt on 2008-12-16 21:58:16 as along with 20 people and 2 groups skembel esyoun Thaverkamp kinestetika knaseanka eoghanharr johanviklund bpb jmeppley balajis eweaver AaronDarling bluto jdelcampo azazello beatrizfernandez wenhan pradiptaray mcox vrich microbiology_nijmegen Microbial-Ecology
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. [My Copy] Genome research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to assembly fivestar sequencing subassemblypaper by jbhiatt on 2008-11-24 19:58:59 as along with 13 people and 2 groups michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin abizar acn hpaces SIMR bioinformatics Bioinformatics
	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biology by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman edited by Jonathan A. Eisen posted to subassemblypaper fourstar metagenomics sequencing by jbhiatt on 2008-11-18 16:41:03 as
	Comparative Metagenomics of Microbial Communities [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to subassemblypaper fivestar metagenomics sequencing by jbhiatt on 2008-11-17 21:18:11 as along with 18 people and 5 groups hwright skembel Thaverkamp Scis0000002 idoerg kozo-ni jmeppley AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen djkt Microbial-Ecology anammox microbiology_nijmegen Green Lab iSEEM

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threestar	129
method	124
fourstar	101
journalclub	100
sequencing	92
medical	79
twostar	60
engineering	55
transcriptomics	48
fivestar	47
genotyping	41
random	35
geneticspaper	30
subassemblypaper	29
cancer	27
multiplexing	27
review	25
computational	20
proteomics	20
rnai	20
screening	20
systems	19
metagenomics	18
gwas	17
stemcell	17
dermpaper	15
evolution	15
landmark	12
immunology	11
math	11
metabolism	11
infectious	10
commentary	9
epigenetics	8
assembly	7
capture	7
dnacomputing	7
imaging	7
microfluidics	7
onestar	7
geneticmod	6
cleanup	5
aging	4
diagnostic	4
linkagemapping	4
stochasticity	4
454	2
amplification	2
epidemiology	2
fosmid	2
hypertension	2
policy	2
cardiovascular	1
caserecord	1
detection	1
example	1
femoroacetab	1
mutation	1
nostar	1
singlemol	1
subass	1

jbhiatt's subassemblypaper [29 articles] Export

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