jdiggans's library 95 articles Export

	Human SULT1A1 Gene: Copy Number Differences and Functional Implications. [My Copy] Hum Mol Genet (22 December 2006) by Scott J J. Hebbring, Araba A A. Adjei, Janel L L. Baer, et al.Gregory D D. Jenkins, Jianping Zhang, Julie M M. Cunningham, Daniel J J. Schaid, Richard M M. Weinshilboum, Stephen N N. Thibodeau posted to regulation expression cnv by jdiggans on 2007-01-23 22:08:41 as
	Toxicogenomics--a new systems toxicology approach to understanding of gene-environment interactions. [My Copy] Ann N Y Acad Sci, Vol. 1076 (September 2006), pp. 703-706. by K. Olden posted to algorithm mechanism method toxicogenomics by jdiggans on 2007-01-02 20:07:53 as
	Application of visualization tools to the analysis of histopathological data enhances biological insight and interpretation. [My Copy] Toxicol Pathol, Vol. 34, No. 7. (2006), pp. 921-928. by E. K. Lobenhofer, G. A. Boorman, K. L. Phillips, et al.A. N. Heinloth, D. E. Malarkey, P. E. Blackshear, C. Houle, P. Hurban posted to analysis graph mechanism toxicogenomics visualization by jdiggans on 2007-01-02 20:01:24 as
	GOLEM: an interactive graph-based gene-ontology navigation and analysis tool [My Copy] BMC Bioinformatics, Vol. 7 (10 October 2006), 443. by Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya posted to ontology tool by jdiggans on 2006-10-18 01:27:20 as along with 6 people and 2 groups bertelsen guhjy tardigrade ealloza giovanni carlk BioinfoCIPF GeschwindLab
	Clinical proteomics and biomarker discovery. [My Copy] Ann N Y Acad Sci, Vol. 1022 (June 2004), pp. 295-305. by D. J. Johann, M. D. McGuigan, A. R. Patel, et al.S. Tomov, S. Ross, T. P. Conrads, T. D. Veenstra, D. A. Fishman, G. R. Whiteley, E. F. Petricoin, L. A. Liotta posted to biomarker proteomics regulatory by jdiggans on 2006-10-17 00:44:44 as
	Medical applications of microarray technologies: a regulatory science perspective. [My Copy] Nat Genet, Vol. 32 Suppl (December 2002), pp. 474-479. by E. F. Petricoin, J. L. Hackett, L. J. Lesko, et al.R. K. Puri, S. I. Gutman, K. Chumakov, J. Woodcock, D. W. Feigal, K. C. Zoon, F. D. Sistare posted to expression regulatory by jdiggans on 2006-10-17 00:43:37 as along with 1 person stsaft
	Toxicogenomics: a new revolution in drug safety. [My Copy] Drug Discov Today, Vol. 7, No. 13. (1 July 2002), pp. 728-736. by A. L. Castle, M. P. Carver, D. L. Mendrick posted to review toxicogenomics by jdiggans on 2006-10-17 00:41:43 as
	Pharmaceuticals: A new grammar for drug discovery [My Copy] Nature, Vol. 437, No. 7058. (21 September 2005), pp. 491-493. by Mark C. Fishman, Jeffery A. Porter posted to interesting by jdiggans on 2006-10-16 05:24:35 as along with 2 people Vaccine kuhn
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted to interesting by jdiggans on 2006-10-16 05:24:22 as along with 40 people and 10 groups schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin hryk streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
	Tumour biology: Policing of oncogene activity by p53 [My Copy] Nature, Vol. 443, No. 7108. (13 September 2006), pp. 159-159. by Alejo Efeyan, Isabel Garcia-Cao, Daniel Herranz, Susana Velasco-Miguel, Manuel Serrano posted to interesting by jdiggans on 2006-10-16 05:24:09 as along with 2 people and 2 groups marcius ealloza BioinfoCIPF SGU-CIPF
	Design principles of molecular networks revealed by global comparisons and composite motifs [My Copy] Genome Biology, Vol. 7 (19 July 2006), R55. by Haiyuan Yu, Yu Xia, Valery Trifonov, Mark Gerstein posted to interesting by jdiggans on 2006-10-16 05:23:59 as along with 6 people and 2 groups carlk indigoviolet koller Takayuki beete vertikalist EisenLab BTS-PT-AS-CS
	Core transcriptional regulatory circuitry in human hepatocytes. [My Copy] Mol Syst Biol, Vol. 2 (2006) by D. T. Odom, R. D. Dowell, E. S. Jacobsen, et al.L. Nekludova, P. A. Rolfe, T. W. Danford, D. K. Gifford, E. Fraenkel, G. I. Bell, R. A. Young posted to human interesting invitro by jdiggans on 2006-10-16 05:23:42 as along with 5 people and 1 group Schmidtc cconboy kengg koller gdb Plantandetc
	PAGE: parametric analysis of gene set enrichment. [My Copy] BMC bioinformatics, Vol. 6 (2005) by Seon-Young Y. Kim, David J. Volsky posted to algorithm analysis tool by jdiggans on 2006-10-16 05:22:49 as along with 9 people and 1 group shikin tonamswish mtagaya pradeep2005s ealloza waghsk srp33 heliopais giovenko BioinfoCIPF
	On methods for gene function scoring as a means of facilitating the interpretation of microarray results. [My Copy] J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 798-809. by N. Raghavan, D. Amaratunga, J. Cabrera, A. Nie, J. Qin, M. McMillian posted to analysis annotation review tool by jdiggans on 2006-10-16 05:22:26 as along with 1 person and 1 group ealloza BioinfoCIPF
	Application of a priori established gene sets to discover biologically important differential expression in microarray data [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279. by Andrea Bild, Phillip G. Febbo posted to algorithm analysis by jdiggans on 2006-10-16 05:21:53 as along with 5 people and 1 group bertelsen antonkratz maryee ealloza srp33 BioinfoCIPF
	Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. [My Copy] Bioinformatics, Vol. 22, No. 14. (July 2006), pp. e108-e116. by E. Edelman, A. Porrello, J. Guinney, et al.B. Balakumaran, A. Bild, Pg Febbo, S. Mukherjee posted to algorithm analysis tool by jdiggans on 2006-10-16 05:21:29 as along with 944 people and 149 groups lauratest pkt thegoose berylschaefer Venu convulted nina4citeulike AJCann smccord chethrington NitinCR Compartia MariekeVanWamel cvq gurprit_raunu refkit fordela Thaverkamp kennedie yuichi1004 sheshebrown marinari eunsugee derchao yse guhjy alexloh80 Zaraitzu RMT Shindy Biomedyknight lesikv TomQ pyjamashark Becky_Shen RandolphCarter LaurieEMiller skolaric smogit apokgmc ldietz ibbuntu bleong mansaok nnikolaj jyew christianholz lottebelice m8eld1989 mchinen magalb Xountini gimpf watersiren cwtjoa agogoh3 samanthahut rsilveira79 andresmh kgutwin thyk mboehmer bernstei waghsk kimlab mlovelace BioNica diomede tulaydemir doncieux szielke daniel_pang paulducker thomast3 brothers hplatero suneilmohan bazza030 jjray jimjoe IulianGherghel pnauer jhibbits alexstorer chem-pion ImranRaoufMalik lisa1 Evangelia jorgen 100155430 z3phyr micha137 uperinetti jsenn antistarlet Alemohammad DonIvanCorleone Calder viveknallur emiliorp kdouglass hotnuts embersp frdr nlafferty pkm lupianiedu APSLuppa raik MarcJungbluth tyrell_turing bertrandservin cswinburne amarois JSicot diamantis reyez guano lizbiogen xistenshal hdopazo christian_librarian sharonazzopardi kozima lionicebear coco0214 ndegara hyhu84 erevans benmiller314 octobremtl kroatiker kightley torresan nkishan RalfMitschke Growlingfish georgenichols eddymier enricaki udivi sjgaller arnavjhala gferencz sgroenewegen asalvadori hideojoho ChristianRauh richpb7 JonathanD bsuter nshephard axin mount_misery isp tfogal pwais splzdnkl jszekely rodney baaklini lynnefox tertel raposoc swatipendyala kentz hdz majdula dabilock Ubiquitousuk ChaTo karin ivanshi tyvokka tnhh turadg scalptob Torsten_Holmer Rootsister frauta jspeer jmetz ejmeij pblanchenay dhbradshaw ecome soeleadership mederly JLMC sbutterfill rsimitev theshadowhost standara chiayung stajich sannama softsimu vlado CameronNeylon emmackinnon fbr susz mazsx cveres johnabender HugoMarcelo dlobo fernand0 dperkel egh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail mtruksa pauldobson qbin1304 fluffels loison CVLab BiebmiepLeen marcusbm dumpa afrojapchick asmusolsen jjrodriguez UFGeog mitchee3 rodrigobotelho nealpfox gofsu0 pmaire soloaries HrRossi nschwart derkaiser athma alexbdigital amaitos ejones caitlinshanley lunarmono jblosnich willfox sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins ptrobajo tenalka stringertheory muli Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk 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mamadoudiao LTrottier giolakat nikko sarahmccrum malkav30 psique Repton gvandyk1 pdessus joni2am taenneken vrich Neeperando ranger midshipman Corbasson murb carterb applebyb kaniko skumagai Stepstep abdulpur mirweis nlauzier Axis gi0rgi0ne danzinde christiankissig tbolt427 Scis0000002 balicea Langster jeanbean EsepBib pulsus-morbi ezaydens melody scarcelan ablam maburkitt fghjorth austin MariaChiaraP wartaalman dconnelly kungcc sbaete tanneama000 ricckli boellernadja nafets laurabailey iarmac alexispaz pathari steveut wolfe275 dcastro yori amydash rpbharti rwilliamson motchy songpku andrealira Zephyrus wilkinm pchia davidchavalarias 3D24 INC Groep Z2 UCD TACs Master VTI - veille intelligence economique Oxford Hooker Group Web2Learning Web2-0_Education Semantic Web and online learning Gender and ICT e-JC BioVT Security in SOA PIM Semantic Desktop enviro ed Med Anthro @ UF Interactive Archivist Mycology GEB Biocatalysis and Biotransformation UF Geography Department CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Social Informatics @ IU Patent_Reform Convention on Knowledge Commons feminist_technoscience Roswell Cancer Crosstalk Parsons MFA DT 2008 Thesis Research
	Significance analysis of functional categories in gene expression studies: a structured permutation approach [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1943-1949. by William T. Barry, Andrew B. Nobel, Fred A. Wright posted to algorithm analysis tool by jdiggans on 2006-10-16 05:19:47 as along with 4 people and 1 group tg150 ealloza nedwards heliopais BioinfoCIPF
	T-profiler: scoring the activity of predefined groups of genes using gene expression data. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by A. Boorsma, B. C. Foat, D. Vis, F. Klis, H. J. Bussemaker posted to algorithm analysis tool by jdiggans on 2006-10-16 05:18:50 as along with 1 person and 1 group ealloza BioinfoCIPF
	ErmineJ: tool for functional analysis of gene expression data sets. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by H. K. Lee, W. Braynen, K. Keshav, P. Pavlidis posted to statistics tool by jdiggans on 2006-10-16 05:18:00 as along with 3 people and 1 group oliviawi ealloza raylim BioinfoCIPF
	stam--a Bioconductor compliant R package for structured analysis of microarray data. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by C. Lottaz, R. Spang posted to algorithm analysis tool by jdiggans on 2006-10-16 05:17:04 as along with 1 person and 1 group ealloza BioinfoCIPF
	Group testing for pathway analysis improves comparability of different microarray data sets. [My Copy] Bioinformatics (7 August 2006) by Theodora Manoli, Norbert Gretz, Hermann-Josef J. Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors posted to algorithm analysis by jdiggans on 2006-10-16 05:15:56 as along with 4 people and 1 group jfr ealloza macavity1g ptrobajo BioinfoCIPF
	To permute or not to permute [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2244-2248. by Yifan Huang, Haiyan Xu, Violeta Calian, Jason C. Hsu posted to algorithm analysis statistics by jdiggans on 2006-10-16 05:14:19 as along with 2 people and 1 group guhjy ealloza BioinfoCIPF
	ADGO: analysis of differentially expressed gene sets using composite GO annotation [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2249-2253. by Dougu Nam, Sang-Bae Kim, Seon-Kyu Kim, Sungjin Yang, Seon-Young Kim, In-Sun Chu posted to algorithm analysis ontology by jdiggans on 2006-10-16 05:13:21 as along with 2 people and 1 group ealloza heliopais BioinfoCIPF
	OrderedList--a bioconductor package for detecting similarity in ordered gene lists. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 18. (15 September 2006), pp. 2315-2316. by Claudio Lottaz, Xinan Yang, Stefanie Scheid, Rainer Spang posted to algorithm analysis tool by jdiggans on 2006-10-16 05:12:21 as along with 3 people and 1 group daforerog ima ealloza BioinfoCIPF
	A rapid method for microarray cross platform comparisons using gene expression signatures☆ [My Copy] Molecular and Cellular Probes, Vol. 21, No. 1. (10 February 2007), pp. 35-46. by Chris Cheadle, Kevin G. Becker, Yoon S. Cho-Chung, et al.Maria Nesterova, Tonya Watkins, William Wood III, Vinayakumar Prabhu, Kathleen C. Barnes posted to algorithm analysis cross-platform expression quality by jdiggans on 2006-10-16 05:11:18 as along with 6 people and 2 groups zufar heliopais guhjy jfr neveaire ealloza microRNA BioinfoCIPF
	Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data [My Copy] BMC Bioinformatics, Vol. 7 (03 October 2006), 426. by Alex Lewin, Ian C. Grieve posted to algorithm analysis ontology by jdiggans on 2006-10-16 05:10:13 as along with 6 people and 2 groups ealloza giovanni uprock heliopais waghsk ndiaz BioinfoCIPF GeschwindLab
	DrugBank: a comprehensive resource for in silico drug discovery and exploration [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_1. (1 January 2006), pp. D668-672. by David S. Wishart, Craig Knox, An C. Guo, et al.Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey posted to feature interesting by jdiggans on 2006-10-16 05:08:17 as along with 11 people and 2 groups sm-rush bertelsen wenhui yaredo dansullivanblk kuhn maryee sangeetha madhadron massivemayhem elvinado Bioinformatics insilicodrug
	Exploring the diversity of complex metabolic networks. [My Copy] Bioinformatics (4 January 2005) by Vassily Hatzimanikatis, Chunhui Li, Justin A A. Ionita, Christopher S S. Henry, Matthew D D. Jankowski, Linda J J. Broadbelt posted to feature interesting network by jdiggans on 2006-10-16 05:07:40 as along with 6 people pablocarb greg betainverse kuhn alexg shung
	Information-based clustering [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 51. (20 December 2005), pp. 18297-18302. by Noam Slonim, Gurinder S. Atwal, Gašper Tkačik, William Bialek posted to algorithm clustering by jdiggans on 2006-10-16 05:06:11 as along with 11 people and 1 group carlk saket tmmurali kuhn textoris okarsligil bayesian balicea dylan77 nklee quianominorleo Bioinformatics
	Drug discovery: a historical perspective. [My Copy] Science, Vol. 287, No. 5460. (17 March 2000), pp. 1960-1964. by J. Drews posted to interesting review by jdiggans on 2006-10-16 05:05:28 as along with 12 people and 5 groups jbesnard Yanno BragilMassoud nachtalp kuhn Borelli sangeetha joergkurtwegner ramensky LamBras srp33 yaredo Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug
	Database resources of the National Center for Biotechnology Information. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by D. L. Wheeler, T. Barrett, D. A. Benson, et al.S. H. Bryant, K. Canese, V. Chetvernin, D. M. Church, M. DiCuccio, R. Edgar, S. Federhen, L. Y. Geer, W. Helmberg, Y. Kapustin, D. L. Kenton, O. Khovayko, D. J. Lipman, T. L. Madden, D. R. Maglott, J. Ostell, K. D. Pruitt, G. D. Schuler, L. M. Schriml, E. Sequeira, S. T. Sherry, K. Sirotkin, A. Souvorov, G. Starchenko, T. O. Suzek, R. Tatusov, T. A. Tatusova, L. Wagner, E. Yaschenko posted to database review by jdiggans on 2006-10-16 05:04:49 as along with 8 people aalibes miguel kuhn dullhunk duartemolha happy_manatee zlu frohike
	Literature mining for the biologist: from information retrieval to biological discovery [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 119-129. by Lars J. Jensen, Jasmin Saric, Peer Bork posted to review textmining by jdiggans on 2006-10-16 05:04:02 as along with 47 people and 4 groups tanyacovi6 MARCOUNAM eudominguezmartin sm-rush LEONRANGEL artaban421 rocling bertelsen virolog dipenps druvus Zephyrus fgibson psique lmichan cisevol ilyashl henk-cul daforerog isimpson dansullivanblk yggdrasil Enro guhjy kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox cjeans ghattem michaelmampaey dejori jandot mircea farzanehs larsjuhljensen adoms skumagai TheresaNiederberger satre akastrin ibuch BergmanLab T_lab biomedical-nlp ADMiRes
	The Effect of Oxygen on Biochemical Networks and the Evolution of Complex Life [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1764-1767. by Jason Raymond, Daniel Segre posted to interesting by jdiggans on 2006-10-16 05:03:21 as along with 4 people pablocarb schwartzjmc kentsis kuhn
	Interactome: gateway into systems biology. [My Copy] Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005) by M. E. Cusick, N. Klitgord, M. Vidal, D. E. Hill posted to feature graph interesting review by jdiggans on 2006-10-16 05:02:38 as along with 8 people and 2 groups kuhn maryee wnpx gandhih braingrind grahamc dejori wilbur ic4 generif_paper
	Systematic Association of Genes to Phenotypes by Genome and Literature Mining [My Copy] PLoS Biol, Vol. 3, No. 5. (5 April 2005), e134. by Jan O. Korbel, Tobias Doerks, Lars J. Jensen, et al.Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D. Hooper, Miguel A. Andrade, Peer Bork posted to database feature interesting by jdiggans on 2006-10-16 05:01:19 as along with 14 people and 1 group gjuggler anthropomorphism Enro setar miguel tmmurali kuhn imouthesmp yas balajis benny hpiwowar fisherp larsjuhljensen T_lab
	Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database. [My Copy] Biochemistry, Vol. 45, No. 8. (28 February 2006), pp. 2545-2555. by Scott C-H C. Pegg, Shoshana D. Brown, Sunil Ojha, et al.Jennifer Seffernick, Elaine C. Meng, John H. Morris, Patricia J. Chang, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt posted to database interesting by jdiggans on 2006-10-16 04:59:31 as along with 7 people NickFurnham grottenolm yzlab ucbcjbm kuhn tny sim82
	Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks. [My Copy] Bioinformatics (8 May 2006) by Syed Asad A. Rahman, Dietmar Schomburg posted to graph interesting network by jdiggans on 2006-10-16 04:58:32 as along with 7 people and 1 group jiny kuhn tny AbnerCYH bluto Nadam mdstobbe Algorithms
	Systems modeling: a pathway to drug discovery. [My Copy] Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406. by P. Rajasethupathy, S. J. Vayttaden, U. S. Bhalla posted to interesting by jdiggans on 2006-10-16 04:56:18 as along with 4 people snuppepuppan kuhn wnpx mmt
	Gene expression analysis reveals chemical-specific profiles. [My Copy] Toxicol Sci, Vol. 67, No. 2. (June 2002), pp. 219-231. by H. K. Hamadeh, P. R. Bushel, S. Jayadev, et al.K. Martin, O. DiSorbo, S. Sieber, L. Bennett, R. Tennant, R. Stoll, J. C. Barrett, K. Blanchard, R. S. Paules, C. A. Afshari posted to data expression toxicogenomics by jdiggans on 2006-10-16 04:29:08 as
	The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1929-1935. by Justin Lamb, Emily D. Crawford, David Peck, et al.Joshua W. Modell, Irene C. Blat, Matthew J. Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N. Ross, Michael Reich, Haley Hieronymus, Guo Wei, Scott A. Armstrong, Stephen J. Haggarty, Paul A. Clemons, Ru Wei, Steven A. Carr, Eric S. Lander, Todd R. Golub posted to analysis data expression toxicogenomics by jdiggans on 2006-10-16 04:27:18 as along with 29 people and 9 groups gbloeb zufar ipark-kaist bertelsen mingzhi AbnerCYH Dulcinea dansullivanblk BragilMassoud guhjy kuhn jfr yas balajis marcius lhonigberg neveaire kengg ealloza koller mlovell ezra jeremymiller frohike massivemayhem lp2 pablomendes jdiezperezj askrajiv Biostatistics Computational-Genomics Bioinformatics Neuroscience T_lab BioinfoCIPF SGU-CIPF GeschwindLab Plantandetc
	Classification of a large microarray data set: algorithm comparison and analysis of drug signatures. [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 724-736. by G. Natsoulis, L. El Ghaoui, G. R. Lanckriet, et al.A. M. Tolley, F. Leroy, S. Dunlea, B. P. Eynon, C. I. Pearson, S. Tugendreich, K. Jarnagin posted to data iconix modeling signature toxicogenomics by jdiggans on 2006-10-16 04:22:55 as along with 3 people and 1 group mingzhi tmmurali frohike Bioinformatics
	Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action. [My Copy] J Biotechnol, Vol. 119, No. 3. (29 September 2005), pp. 219-244. by B. Ganter, S. Tugendreich, C. I. Pearson, et al.E. Ayanoglu, S. Baumhueter, K. A. Bostian, L. Brady, L. J. Browne, J. T. Calvin, G. J. Day, N. Breckenridge, S. Dunlea, B. P. Eynon, L. M. Furness, J. Ferng, M. R. Fielden, S. Y. Fujimoto, L. Gong, C. Hu, R. Idury, M. S. Judo, K. L. Kolaja, M. D. Lee, C. McSorley, J. M. Minor, R. V. Nair, G. Natsoulis, P. Nguyen, S. M. Nicholson, H. Pham, A. H. Roter, D. Sun, S. Tan, S. Thode, A. M. Tolley, A. Vladimirova, J. Yang, Z. Zhou, K. Jarnagin posted to data database iconix toxicogenomics by jdiggans on 2006-10-16 04:22:17 as along with 1 person shikin
	The Comparative Toxicogenomics Database: A Cross-Species Resource for Building Chemical-Gene Interaction Networks [My Copy] Toxicological Sciences, Vol. 92, No. 2. (August 2006), pp. 587-595. by Mattingly, J. Carolyn, Rosenstein, et al.C. Michael, Davis, Allan Peter, Colby, T. Glenn, Forrest, N. John, Boyer, L. James posted to database toxicogenomics by jdiggans on 2006-10-16 04:16:32 as
	Database development in toxicogenomics: issues and efforts. [My Copy] Environ Health Perspect, Vol. 112, No. 4. (March 2004), pp. 495-505. by W. B. Mattes, S. D. Pettit, S. A. Sansone, P. R. Bushel, M. D. Waters posted to database toxicogenomics by jdiggans on 2006-10-16 04:14:45 as along with 1 person orzenil
	Clofibrate-induced gene expression changes in rat liver: a cross-laboratory analysis using membrane cDNA arrays. [My Copy] Environ Health Perspect, Vol. 112, No. 4. (March 2004), pp. 428-438. by V. A. Baker, H. M. Harries, J. F. Waring, et al.C. M. Duggan, H. A. Ni, R. A. Jolly, L. W. Yoon, A. T. De Souza, J. E. Schmid, R. H. Brown, R. G. Ulrich, J. C. Rockett posted to clofibrate mechanism quality by jdiggans on 2006-10-16 03:47:11 as
	Overview of an interlaboratory collaboration on evaluating the effects of model hepatotoxicants on hepatic gene expression. [My Copy] Environ Health Perspect, Vol. 112, No. 4. (March 2004), pp. 423-427. by R. G. Ulrich, J. C. Rockett, G. G. Gibson, S. D. Pettit posted to hepatotoxicity mechanism by jdiggans on 2006-10-16 03:46:12 as
	Comparison of oxidative stress and changes of xenobiotic metabolizing enzymes induced by phthalates in rats. [My Copy] Food Chem Toxicol, Vol. 42, No. 1. (January 2004), pp. 107-114. by K. W. Seo, K. B. Kim, Y. J. Kim, J. Y. Choi, K. T. Lee, K. S. Choi posted to clofibrate mechanism by jdiggans on 2006-10-16 03:45:52 as
	Mechanism of clofibrate hepatotoxicity: mitochondrial damage and oxidative stress in hepatocytes. [My Copy] Free Radic Biol Med, Vol. 31, No. 5. (1 September 2001), pp. 659-669. by B. Qu, Q. T. Li, K. P. Wong, T. M. Tan, B. Halliwell posted to clofibrate invitro mechanism by jdiggans on 2006-10-16 03:45:21 as
	PPAR-alpha: a key to the mechanism of hepatoprotection by clofibrate. [My Copy] Toxicol Sci, Vol. 57, No. 2. (October 2000), pp. 187-190. by H. M. Mehendale posted to clofibrate mechanism by jdiggans on 2006-10-16 03:45:03 as
	Clofibrate-induced in vitro hepatoprotection against acetaminophen is not due to altered glutathione homeostasis. [My Copy] Toxicol Sci, Vol. 56, No. 1. (July 2000), pp. 220-228. by F. A. Nicholls-Grzemski, I. C. Calder, B. G. Priestly, P. C. Burcham posted to apap clofibrate mechanism by jdiggans on 2006-10-16 03:44:38 as

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toxicogenomics	34
mechanism	30
analysis	26
expression	17
algorithm	14
interesting	14
review	13
apap	12
tool	11
clofibrate	10
database	7
data	6
method	6
ontology	5
rat	5
feature	4
invitro	4
regulatory	4
statistics	4
graph	3
hepatotoxicity	3
iconix	3
network	3
quality	3
toxicity	3
toxicology	3
modeling	2
proteomics	2
signature	2
annotation	1
biomarker	1
classification	1
clustering	1
cnv	1
cross-platform	1
genotox	1
human	1
immunotoxicity	1
liver	1
metabolism	1
prediction	1
regulation	1
textmining	1
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