jengeldk's library 56 articles Export

	The application of algorithmic information theory to noisy patterned strings [My Copy] Complexity, Vol. 12, No. 2. (2006), pp. 52-58. by Sean Devine posted to complexity by jengeldk on 2009-10-30 14:34:50 as along with 1 person dpf
	Discovering Dependencies via Algorithmic Mutual Information: A Case Study in DNA Sequence Comparisons [My Copy] Machine Learning, Vol. 21, No. 1. (1 October 1995), pp. 35-50. by Aleksandar Milosavljević posted to similarity_measure mutual_information by jengeldk on 2009-10-30 14:15:10 as
	Estimating mutual information [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 69, No. 6. (2004) by Alexander Kraskov, Harald Stogbauer, Peter Grassberger posted to no-tag by jengeldk on 2009-10-30 14:10:43 as along with 4 people davidecellai mmunson kvorg phreeza
	Nonparametric Entropy Estimation: An Overview [My Copy] International Journal of the Mathematical Statistics Sciences, Vol. 6 (1997), pp. 17-39. by J. Beirlant, E. J. Dudewicz, L. Györfi, E. C. Meulen posted to no-tag by jengeldk on 2009-10-30 14:08:33 as along with 1 person roys
	Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions† [My Copy] Biochemistry, Vol. 44, No. 19. (1 May 2005), pp. 7156-7165. by Gregory B. Gloor, Louise C. Martin, Lindi M. Wahl, Stanley D. Dunn posted to mutual_information multiple_sequence_alignments by jengeldk on 2009-10-30 14:03:12 as along with 3 people dfdong LeightonP nirfriedman
	A Mutual Information Based Sequence Distance For Vertebrate Phylogeny Using Complete Mitochondrial Genomes [My Copy] International Conference on Natural Computation, Vol. 2 (2007), pp. 253-257. by Z. G. Yu, Z. Mao, L. Q. Zhou, V. V. Anh posted to mutual_information by jengeldk on 2009-10-30 13:57:14 as
	RNA sequence analysis using covariance models [My Copy] Nucl. Acids Res., Vol. 22, No. 11. (11 June 1994), pp. 2079-2088. by Sean R. Eddy, Richard Durbin posted to no-tag by jengeldk on 2009-10-30 13:51:37 as along with 6 people and 1 group danatcaret evaf arcticrasta vwchan raylim elfar beta
	Sequence alignment and mutual information [My Copy] (23 Oct 2008) by Orion Penner, Peter Grassberger, Maya Paczuski posted to mutual_information information_theory by jengeldk on 2009-10-30 13:47:21 as along with 1 person Diego_Prada
	A Probabilistic Spell for the Curse of Dimensionality [My Copy] Algorithm Engineering and Experimentation (2001), pp. 147-160. by Edgar Chávez, Gonzalo Navarro posted to metric_space dimensionality by jengeldk on 2009-10-30 13:41:17 as
	On the similarity metric and the distance metric☆ [My Copy] Theoretical Computer Science, Vol. 410, No. 24-25. (28 May 2009), pp. 2365-2376. by Shihyen Chen, Bin Ma, Kaizhong Zhang posted to similarity_measure measures dissimilarity_measure by jengeldk on 2009-10-30 13:38:29 as along with 2 people caicai svenrahmann
	A molecular sequence metric and evolutionary trees [My Copy] Mathematical Biosciences, Vol. 19, No. 1-2. (February 1974), pp. 9-25. by W. Beyer posted to triangle_inequality evolutionary_trees by jengeldk on 2009-10-30 13:33:19 as
	Additive evolutionary trees. [My Copy] Journal of theoretical biology, Vol. 64, No. 2. (21 January 1977), pp. 199-213. by M. S. Waterman, T. F. Smith, M. Singh, W. A. Beyer posted to no-tag by jengeldk on 2009-10-30 13:25:48 as
	On the similarity of dendrograms. [My Copy] Journal of theoretical biology, Vol. 73, No. 4. (21 August 1978), pp. 789-800. by M. S. Waterman, T. F. Smith posted to no-tag by jengeldk on 2009-10-30 13:25:48 as
	Comparative biosequence metrics. [My Copy] Journal of molecular evolution, Vol. 18, No. 1. (1981), pp. 38-46. by T. F. Smith, M. S. Waterman, W. M. Fitch posted to no-tag by jengeldk on 2009-10-30 13:25:48 as
	Regulatory pattern identification in nucleic acid sequences. [My Copy] Nucleic acids research, Vol. 11, No. 7. (11 April 1983), pp. 2221-2231. by J. R. Sadler, M. S. Waterman, T. F. Smith posted to no-tag by jengeldk on 2009-10-30 13:25:48 as
	Identification of common molecular subsequences. [My Copy] Journal of molecular biology, Vol. 147, No. 1. (25 March 1981), pp. 195-197. by T. F. Smith, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as along with 21 people rshe maria_hauser jmanning2k cmor parnell adamnellis timflutre heliopais mcbla alessandroparini usagi-kirin creswick vavi bicko dgront rabio cjeans incovoma sujaikumar newton1234 bozdagd
	Overlapping genes and information theory. [My Copy] Journal of theoretical biology, Vol. 91, No. 2. (21 July 1981), pp. 379-380. by T. F. Smith, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as
	Statistical characterization of nucleic acid sequence functional domains. [My Copy] Nucleic acids research, Vol. 11, No. 7. (11 April 1983), pp. 2205-2220. by T. F. Smith, M. S. Waterman, J. R. Sadler posted to no-tag by jengeldk on 2009-10-30 13:22:50 as
	Sequence alignments in the neighborhood of the optimum with general application to dynamic programming. [My Copy] Proc Natl Acad Sci U S A, Vol. 80, No. 10. (May 1983), pp. 3123-3124. by Michael S S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as along with 2 people dgront rabio
	Sequence alignment and penalty choice. Review of concepts, case studies and implications. [My Copy] Journal of molecular biology, Vol. 235, No. 1. (7 January 1994), pp. 1-12. by M. Vingron, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as along with 1 person edvin
	Rapid and accurate estimates of statistical significance for sequence data base searches. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 11. (24 May 1994), pp. 4625-4628. by M. S. Waterman, M. Vingron posted to no-tag by jengeldk on 2009-10-30 13:22:50 as
	A method for fast database search for all k-nucleotide repeats. [My Copy] Nucleic acids research, Vol. 22, No. 22. (11 November 1994), pp. 4828-4836. by G. Benson, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as
	Probabilistic and statistical properties of words: an overview. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 1-2. (r 2000), pp. 1-46. by G. Reinert, S. Schbath, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as along with 14 people and 2 groups aheilbut n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	Estimating the Repeat Structure and Length of DNA Sequences Using â-Tuples [My Copy] Genome Research, Vol. 13, No. 8. (August 2003), pp. 1916-1922. by Xiaoman Li, Michael S. Waterman posted to no-tag by jengeldk on 2009-10-30 13:22:50 as along with 1 person seb1
	Reconstruction of strings past. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 9, No. 1. (February 1993), pp. 1-7. by C. N. Yee, L. Allison posted to no-tag by jengeldk on 2009-10-30 13:17:30 as
	An MML classification of protein structure that knows about angles and sequence. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1998), pp. 585-596. by T. Edgoose, L. Allison, D. L. Dowe posted to no-tag by jengeldk on 2009-10-30 13:17:30 as
	Discovering simple DNA sequences by compression. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1998), pp. 597-608. by D. R. Powell, D. L. Dowe, L. Allison, T. I. Dix posted to no-tag by jengeldk on 2009-10-30 13:17:30 as
	Compression of strings with approximate repeats. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 6 (1998), pp. 8-16. by L. Allison, T. Edgoose, T. I. Dix posted to no-tag by jengeldk on 2009-10-30 13:17:30 as
	Sequence complexity for biological sequence analysis. [My Copy] Computers & chemistry, Vol. 24, No. 1. (January 2000), pp. 43-55. by L. Allison, L. Stern, T. Edgoose, T. I. Dix posted to no-tag by jengeldk on 2009-10-30 13:16:37 as
	Fast, optimal alignment of three sequences using linear gap costs. [My Copy] Journal of theoretical biology, Vol. 207, No. 3. (7 December 2000), pp. 325-336. by D. R. Powell, L. Allison, T. I. Dix posted to no-tag by jengeldk on 2009-10-30 13:16:37 as
	Comparative analysis of long DNA sequences by per element information content using different contexts [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007) by Trevor Dix, David Powell, Lloyd Allison, Julie Bernal, Samira Jaeger, Linda Stern posted to no-tag by jengeldk on 2009-10-30 13:16:37 as along with 1 person nklee
	ALGEBRAIC COMPLEXES APPLIED TO CHEMISTRY. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 55, No. 4. (April 1966), pp. 693-698. by Peter H. Sellers posted to no-tag by jengeldk on 2009-10-30 13:15:15 as
	Pattern recognition in genetic sequences. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 76, No. 7. (July 1979) by Peter H. Sellers posted to no-tag by jengeldk on 2009-10-30 13:15:15 as
	Enzyme kinetics. Thermodynamic constraints on assignment of rate coefficients to kinetic models. [My Copy] Annals of the New York Academy of Sciences, Vol. 779 (15 April 1996), pp. 272-278. by J. Wagg, P. H. Sellers posted to no-tag by jengeldk on 2009-10-30 13:15:15 as
	How to formulate mathematically problems of rate of evolution? [My Copy] The Wistar Institute symposium monograph, Vol. 5 (1967), pp. 21-33. by S. M. Ulam posted to no-tag by jengeldk on 2009-10-30 13:12:55 as
	ON VISUAL HULLS OF SETS. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 57, No. 5. (May 1967), pp. 1172-1174. by G. H. Meisters, S. M. Ulam posted to no-tag by jengeldk on 2009-10-30 13:12:55 as
	Some ideas and prospects in biomathematics. [My Copy] Annual review of biophysics and bioengineering, Vol. 1 (1972), pp. 277-292. by S. M. Ulam posted to no-tag by jengeldk on 2009-10-30 13:12:55 as
	Cleaning up gene databases. [My Copy] Nature, Vol. 343, No. 6254. (11 January 1990) by S. Brunak, J. Engelbrecht, S. Knudsen posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as
	Neural network detects errors in the assignment of mRNA splice sites. [My Copy] Nucleic acids research, Vol. 18, No. 16. (25 August 1990), pp. 4797-4801. by S. Brunak, J. Engelbrecht, S. Knudsen posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as
	Prediction of human mRNA donor and acceptor sites from the DNA sequence. [My Copy] J Mol Biol, Vol. 220, No. 1. (5 July 1991), pp. 49-65. by S. Brunak, J. Engelbrecht, S. Knudsen posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as along with 1 person mloewer
	Multiple alignment using simulated annealing: branch point definition in human mRNA splicing. [My Copy] Nucleic acids research, Vol. 20, No. 10. (25 May 1992), pp. 2511-2516. by A. V. Lukashin, J. Engelbrecht, S. Brunak posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as
	G+C-rich tract in 5' end of human introns. [My Copy] Journal of molecular biology, Vol. 227, No. 1. (5 September 1992), pp. 108-113. by J. Engelbrecht, S. Knudsen, S. Brunak posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as
	Neural network model of the genetic code is strongly correlated to the GES scale of amino acid transfer free energies. [My Copy] Journal of molecular biology, Vol. 243, No. 5. (11 November 1994), pp. 816-820. by N. Tolstrup, J. Toftgård, J. Engelbrecht, S. Brunak posted to engelbrecht by jengeldk on 2009-10-30 13:07:37 as
	Investigations of Escherichia coli promoter sequences with artificial neural networks: new signals discovered upstream of the transcriptional startpoint. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 292-299. by A. G. Pedersen, J. Engelbrecht posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as
	Periodic sequence patterns in human exons. [My Copy] Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology, Vol. 3 (1995), pp. 30-38. by P. Baldi, S. Brunak, Y. Chauvin, J. Engelbrecht, A. Krogh posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as
	Analysis of eukaryotic promoter sequences reveals a systematically occurring CT-signal. [My Copy] Nucleic acids research, Vol. 23, No. 7. (11 April 1995), pp. 1223-1230. by N. I. Larsen, J. Engelbrecht, S. Brunak posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as
	Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase. [My Copy] The Biochemical journal, Vol. 308 ( Pt 3) (15 June 1995), pp. 801-813. by J. E. Hansen, O. Lund, J. Engelbrecht, H. Bohr, J. O. Nielsen, J. E. Hansen posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as
	Defining a similarity threshold for a functional protein sequence pattern: the signal peptide cleavage site. [My Copy] Proteins, Vol. 24, No. 2. (February 1996), pp. 165-177. by H. Nielsen, J. Engelbrecht, G. von Heijne, S. Brunak posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as
	Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level. [My Copy] Proteins, Vol. 25, No. 2. (June 1996), pp. 237-252. by S. Brunak, J. Engelbrecht posted to engelbrecht by jengeldk on 2009-10-30 13:05:57 as along with 2 people saunders msafi

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engelbrecht	16
mutual_information	4
similarity_measure	2
complexity	1
dimensionality	1
dissimilarity_measure	1
entropy_estimates	1
evolutionary_trees	1
information_theory	1
measures	1
metric_space	1
multiple_sequence_alignments	1
shannon_entropy	1
symbol_sequences	1
triangle_inequality	1

jengeldk's library 56 articles Export

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