jfr's library 2727 articles Export

	An introduction to artificial neural networks in bioinformatics--application to complex microarray and mass spectrometry datasets in cancer studies [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 315-329. by Lee J. Lancashire, Christophe Lemetre, Graham R. Ball posted to review neural_networks classification by jfr on 2009-11-04 11:20:37 as along with 7 people and 1 group giovenko eliasman m509396 barry brianb nuin renatomilani Bioinformatics
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted to review clustering by jfr on 2009-11-04 11:17:54 as along with 14 people and 2 groups mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff sobolevnrm barry svozil baker-group Bioinformatics
	Potential Bias in GO::TermFinder [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 289-294. by Robert M. Flight, Peter D. Wentzell posted to gene_set_analysis gene_ontology by jfr on 2009-11-04 11:15:47 as along with 2 people le-gal shwu
	Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 259-277. by William B. Langdon, Graham J. G. Upton, Andrew P. Harrison posted to low_level affy by jfr on 2009-11-04 11:09:53 as along with 2 people bertelsen zufar
	Redefining MicroRNA Targets [My Copy] Vol. 19, No. 10. (26 May 2009), pp. 870-873. by Hervé Seitz posted to mirna_target mirna comment by jfr on 2009-11-04 10:26:58 as along with 1 person and 1 group hrogers microRNA
	Metastatic gene signatures and emerging novel prognostic tests in the management of early stage breast cancer. [My Copy] Clinical & experimental metastasis (18 April 2009) by Attila Tordai, Cornelia Liedtke, Lajos Pusztai posted to review prognosis gene_expression classification breast_cancer by jfr on 2009-11-04 10:24:26 as
	Evidence for Antisense Transcription Associated with MicroRNA Target mRNAs in Arabidopsis [My Copy] PLoS Genet, Vol. 5, No. 4. (17 April 2009), e1000457. by Qing-Jun Luo, Manoj P. Samanta, Fatih Köksal, et al.Jaroslav Janda, David W. Galbraith, Casey R. Richardson, Fangqian Ou-Yang, Christopher D. Rock posted to mirna_target mirna antisense by jfr on 2009-11-04 10:19:32 as along with 2 people and 1 group gdb pengchy microRNA
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1165-1172. by Bracken M. King, Bruce Tidor posted to dimension_reduction clustering by jfr on 2009-11-03 17:22:55 as along with 1 person aheilbut
	A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1152-1157. by Ashok Sharma, Robert Podolsky, Jieping Zhao, Richard A. McIndoe posted to clustering by jfr on 2009-11-03 17:21:31 as along with 4 people guhjy renatomilani rdiaz nuin
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to pathway_analysis gene_set_analysis feature_selection by jfr on 2009-11-03 17:20:53 as along with 4 people praisan rdiaz ipark-kaist guhjy
	Smoothing waves in array CGH tumor profiles [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1099-1104. by Mark A. van de Wiel, Rebecca Brosens, Paul H. C. Eilers, et al.Candy Kumps, Gerrit A. Meijer, Bjorn Menten, Erik Sistermans, Frank Speleman, Marieke E. Timmerman, Bauke Ylstra posted to software segmentation array-cgh by jfr on 2009-11-03 17:17:48 as along with 4 people nuin lwaldron pkonings rdiaz
	The use of gene ontology evidence codes in preventing classifier assessment bias [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1173-1177. by Mark F. Rogers, Asa Ben-Hur posted to gene_ontology classification by jfr on 2009-11-03 17:15:49 as along with 4 people kshameer vkwn rdiaz dullhunk
	The tspair package for finding top scoring pair classifiers in R [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1203-1204. by Jeffrey T. Leek posted to software r classification by jfr on 2009-11-03 17:14:41 as along with 2 people guhjy rdiaz
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Gene expression profiles and breast cancer metastasis: a genetic perspective. [My Copy] Clinical & experimental metastasis, Vol. 26, No. 6. (2009), pp. 497-503. by Kent W. Hunter, Jude Alsarraj posted to review metastasis breast_cancer by jfr on 2009-11-02 17:51:30 as
	A validated gene expression profile for detecting clinical outcome in breast cancer using artificial neural networks. [My Copy] Breast cancer research and treatment (4 April 2009) by L. J. Lancashire, D. G. Powe, J. S. Reis-Filho, et al.E. Rakha, C. Lemetre, B. Weigelt, T. M. Abdel-Fatah, A. R. Green, R. Mukta, R. Blamey, E. C. Paish, R. C. Rees, I. O. Ellis, G. R. Ball posted to classification breast_cancer by jfr on 2009-11-02 17:50:14 as along with 1 person Zephyrus
	Quantitative assessment of tissue biomarkers and construction of a model to predict outcome in breast cancer using multiple imputation. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 29-40. by John W. Emerson, Marisa Dolled-Filhart, Lyndsay Harris, David L. Rimm, David P. Tuck posted to classification breast_cancer by jfr on 2009-11-02 17:48:29 as
	Network-based support vector machine for classification of microarray samples. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by Yanni Zhu, Xiaotong Shen, Wei Pan posted to svm classification by jfr on 2009-11-02 17:43:55 as along with 1 person iskathy
	Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1078-1079. by Björn Nilsson, Mikael Johansson, Fatima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert posted to software segmentation copy-number by jfr on 2009-11-02 17:27:22 as along with 3 people daed rdiaz pkonings
	gcExplorer: interactive exploration of gene clusters. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1089-1090. by Theresa Scharl, Friedrich Leisch posted to software r clustering by jfr on 2009-11-02 17:25:29 as along with 8 people inesdesantiago jmeppley nuin dswan rdiaz guhjy heliopais druvus
	Human microRNAs co-silence in well-separated groups and have different predicted essentialities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1063-1069. by Gábor Boross, Katalin Orosz, Illés J. Farkas posted to mirna by jfr on 2009-11-02 17:23:03 as along with 6 people and 2 groups heliopais samgj shikin ealloza daforerog valeriehilgers microRNA BenosLab
	Tissue specificity and the human protein interaction network. [My Copy] Molecular systems biology, Vol. 5 (7 April 2009) by Alice Bossi, Ben Lehner posted to tissue_specificity protein_networks by jfr on 2009-11-02 17:22:16 as along with 13 people dolchan balicea poirel tmmurali diamantis phoenixzxl coela frohike Kubke renatomilani TRHvidsten grahamc sjung
	microPred: effective classification of pre-miRNAs for human miRNA gene prediction. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 989-995. by Rukshan Batuwita, Vasile Palade posted to mirna by jfr on 2009-11-02 17:19:54 as along with 5 people and 2 groups guhjy neils lwaldron djkt daforerog microRNA Bioinformatics
	A flexible two-stage procedure for identifying gene sets that are differentially expressed. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1019-1025. by Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens posted to gene_set_analysis feature_selection by jfr on 2009-11-02 17:18:58 as along with 6 people zufar renatomilani dswan shikin guhjy rdiaz
	Aurora-A expression is independently associated with chromosomal instability in colorectal cancer. [My Copy] Neoplasia (New York, N.Y.), Vol. 11, No. 5. (May 2009), pp. 418-425. by Yoshifumi Baba, Katsuhiko Nosho, Kaori Shima, et al.Natsumi Irahara, Shoko Kure, Saori Toyoda, Gregory J. Kirkner, Ajay Goel, Charles S. Fuchs, Shuji Ogino posted to colon_cancer aurora_kinase by jfr on 2009-11-02 17:16:28 as
	Personalizing medicine: a systems biology perspective. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Thomas S. Deisboeck posted to systems_biology personalized_medicine editorial by jfr on 2009-11-02 17:13:21 as along with 2 people phoenixzxl allysonlister
	Toward accurate reconstruction of functional protein networks. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Nir Yosef, Lior Ungar, Einat Zalckvar, et al.Adi Kimchi, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to systems_biology protein_networks network by jfr on 2009-11-02 17:11:35 as along with 6 people poirel zwang roys renatomilani phoenixzxl biomcgary
	Distinct genomic aberrations associated with ERG rearranged prostate cancer. [My Copy] Genes, chromosomes & cancer, Vol. 48, No. 4. (April 2009), pp. 366-380. by Francesca Demichelis, Sunita R. Setlur, Rameen Beroukhim, et al.Sven Perner, Jan O. Korbel, Christopher J. Lafargue, Dorothee Pflueger, Cara Pina, Matthias D. Hofer, Andrea Sboner, Maria A. Svensson, David S. Rickman, Alex Urban, Michael Snyder, Matthew Meyerson, Charles Lee, Mark B. Gerstein, Rainer Kuefer, Mark A. Rubin posted to prostate_cancer erg copy-number by jfr on 2009-11-02 17:09:03 as
	Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 2. (April 2009), pp. 115-125. by Sarah L. Hockley, Karen Mathijs, Yvonne C. Staal, et al.Daniel Brewer, Ian Giddings, Joost H. van Delft, David H. Phillips posted to inter-laboratory gene_expression cross-platform by jfr on 2009-11-02 17:07:55 as
	A Two-Stage Feature Selection Method for Gene Expression Data. [My Copy] Omics : a journal of integrative biology (30 January 2009) by Li-Yeh Y. Chuang, Chao-Hsuan H. Ke, Hsueh-Wei W. Chang, Cheng-Hong H. Yang posted to feature_selection classification by jfr on 2009-11-02 17:06:02 as
	The UCSC Cancer Genomics Browser. [My Copy] Nature methods, Vol. 6, No. 4. (April 2009), pp. 239-240. by Jingchun Zhu, J. Zachary Sanborn, Stephen Benz, et al.Christopher Szeto, Fan Hsu, Robert M. Kuhn, Donna Karolchik, John Archie, Marc E. Lenburg, Laura J. Esserman, W. James Kent, David Haussler, Ting Wang posted to software genome_browser by jfr on 2009-11-02 17:02:27 as along with 3 people guhjy chrisamiller neils
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to mirna_target mirna by jfr on 2009-11-02 17:01:43 as along with 14 people and 5 groups ebcgantman ashkelon13 heliopais megraw fenghezi fpattyn tmmurali ppgardne tonamswish stajich Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA Mycology cube_and_beyond
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to integration copy-number classification breast_cancer by jfr on 2009-11-02 16:57:47 as along with 4 people giovenko frohike kdpreter rdiaz
	Multivariate analysis of variance test for gene set analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 897-903. by Chen-An A. Tsai, James J. Chen posted to gene_set_analysis by jfr on 2009-11-02 16:41:51 as along with 7 people guhjy tonamswish natstreet dswan imina rdiaz thomaskelder
	Identification of differential gene pathways with principal component analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 882-889. by Shuangge Ma, Michael R. Kosorok posted to pathway_analysis gene_set_analysis by jfr on 2009-11-02 16:41:12 as along with 10 people kemalpak padosori tonamswish heliopais dswan imina rdiaz VGreiff guhjy druvus
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4828-4833. by Kimberly D. Siegmund, Paul Marjoram, Yen-Jung J. Woo, Simon Tavaré, Darryl Shibata posted to stem_cells methylation colon_cancer by jfr on 2009-11-02 16:34:48 as along with 3 people ajaymalik myzhang rdiaz
	Life sciences on the Semantic Web: the Neurocommons and beyond. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 193-204. by Alan Ruttenberg, Jonathan A. Rees, Matthias Samwald, M. Scott Marshall posted to semantic_web by jfr on 2009-11-02 16:32:06 as along with 10 people and 2 groups rvosa Effie guhjy druvus mikel_egana ehealthgr cassj dullhunk allysonlister fgibson FAB-lab NaCTeM
	Semantic web for integrated network analysis in biomedicine. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 177-192. by Huajun Chen, Li Ding, Zhaohui Wu, Tong Yu, Lavanya Dhanapalan, Jake Y. Chen posted to semantic_web by jfr on 2009-11-02 16:30:56 as along with 5 people nicklynch artaban421 pekrau druvus dullhunk
	Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 15. by Jennifer S. Guimbellot, Stephen W. Erickson, Tapan Mehta, et al.Hui Wen, Grier P. Page, Eric J. Sorscher, Jeong S. Hong posted to mirna_target mirna integration hypoxia gene_expression by jfr on 2009-11-02 16:29:49 as along with 1 person pengchy
	Scaling the walls of discovery: using semantic metadata for integrative problem solving. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 164-176. by Maurice Manning, Amit Aggarwal, Kevin Gao, Greg Tucker-Kellogg posted to semantic_web by jfr on 2009-11-02 16:24:58 as along with 4 people and 1 group guhjy druvus sobolevnrm dullhunk baker-group
	Towards pharmacogenomics knowledge discovery with the semantic web. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (24 March 2009), pp. 153-163. by Michel Dumontier, Natalia Villanueva-Rosales posted to semantic_web by jfr on 2009-11-02 16:23:23 as along with 5 people and 1 group druvus sobolevnrm guhjy fgibson dullhunk baker-group
	Heterogeneity and power in clinical biomarker studies. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 9. (20 March 2009), pp. 1517-1521. by Melania Pintilie, Vladimir Iakovlev, Anthony Fyles, David Hedley, Michael Milosevic, Richard P. Hill posted to pilot_study experiment_design biomarkers by jfr on 2009-11-02 16:22:14 as
	Linked data and provenance in biological data webs. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 139-152. by Jun Zhao, Alistair Miles, Graham Klyne, David Shotton posted to semantic_web by jfr on 2009-11-02 16:19:43 as along with 8 people fgibson artaban421 simonmcbride nuin dullhunk guhjy renatomilani druvus
	Building biomedical web communities using a semantically aware content management system. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 129-138. by Sudeshna Das, Lisa Girard, Tom Green, Louis Weitzman, Alister Lewis-Bowen, Tim Clark posted to semantic_web review by jfr on 2009-11-02 16:17:58 as along with 8 people artaban421 bertelsen dbk guhjy fgibson allysonlister natstreet druvus
	Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. [My Copy] Nucleic acids research, Vol. 37, No. 10. (1 June 2009), pp. 3276-3287. by Anastasis Oulas, Alexandra Boutla, Katerina Gkirtzou, Martin Reczko, Kriton Kalantidis, Panayiota Poirazi posted to mirna_discovery mirna copy-number by jfr on 2009-11-02 16:15:02 as along with 6 people and 2 groups ppgardne ashishanand nuin samgj daforerog tonamswish Journal picks microRNA
	Semantic Web for Health Care and Life Sciences: a review of the state of the art. [My Copy] Briefings in bioinformatics, Vol. 10, No. 2. (1 March 2009), pp. 111-113. by Kei-Hoi H. Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens posted to semantic_web review by jfr on 2009-11-02 16:13:19 as along with 4 people artaban421 druvus nuin dullhunk
	Power of deep, all-exon resequencing for discovery of human trait genes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 10. (10 March 2009), pp. 3871-3876. by Gregory V. Kryukov, Alexander Shpunt, John A. Stamatoyannopoulos, Shamil R. Sunyaev posted to deep_sequencing by jfr on 2009-11-02 16:06:33 as along with 5 people daforerog jsatkosk guhjy lp2 bpcusack

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breast_cancer	449
review	322
mirna	318
classification	261
software	252
colon_cancer	220
methodology	168
gene_expression	155
copy-number	145
network	143
microarray_technology	131
integration	130
bioinformatics	121
clustering	116
feature_selection	103
meta-analysis	89
affy	82
database	78
therapy	77
mirna_target	71
crc_bib	69
array-cgh	68
gene_set_analysis	65
low_level	64
regulation	63
systems_biology	61
pathway_analysis	59
genomics	57
snp-arrays	56
annotation	53
rt-pcr	52
subtypes	50
comment	48
quality_control	47
mutations	42
normalization	41
prognosis	41
estrogen	40
metastasis	40
cancer	37
ffpe	37
microarray_analysis	36
alternative_splicing	35
progression	35
markers	34
protein_interaction	34
statistics	34
fdr	33
proteomics	33
bioconductor	32
deep_sequencing	32
methylation	32
class_discovery	28
snp	28
tamoxifen	28
exon_arrays	25
mutation	25
standards	25
jfrbib	24
r	24
microarray_protocol	23
experiment_design	22
mir17-92	22
two-color	22
brca	21
ovarian_cancer	21
co-expression	20
comparison	20
model	20
pathway	20
tfbs	20
survival_analysis	19
functional_analysis	18
p53	18
treatment	18
platform_comparison	17
evaluation	16
illumina	16
jfrbib04-09	16
kras	16
stem_cell	16
antisense	15
biomarker	15
chip-chip	15
module_detection	15
multiple_testing	15
nmf	15
erbb	14
text-mining	14
basal_subtype	13
bio_signature	13
stageii	13
staging	13
tma	13
cnv	12
genotyping	12
lung_cancer	12
marker	12
reproducible_research	12
sequencing	12
technology	12
drug_discovery	11
gene_ontology	11
maqc	11
missing_values	11
protocol	11
rna_quality	11
cell_line	10
egfr	10
gene_lists	10
genome_browser	10
loh	10
tissue_specificity	10
disease_genes	9
msi	9
probe_design	9
pten	9
segmentation	9
boutique_arrays	8
can_genes	8
control_genes	8
e2f1	8
proliferation	8
sample_size	8
semantic_web	8
tgfb	8
visualization	8
18q_loh	7
consensus_clustering	7
immunohistochemistry	7
inter-laboratory	7
lymphoma	7
myc	7
personalized_medicine	7
tiling_array	7
chip-seq	6
community	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
mirna_regulation	6
motif	6
non-coding	6
promoters	6
serum	6
stem	6
time-course	6
validation	6
correlation	5
gene_pairs	5
grid_computing	5
gwas	5
machine_learning	5
mir21	5
nci60	5
ontology	5
plos_primer	5
plos_rules	5
biobank	4
cin	4
cross-platform	4
data_curation	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
plos_start	4
pooling	4
prioritization	4
prostate_cancer	4
radiation	4
resource	4
trial	4
agilent	3
apc	3
bim	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
hapmap	3
interaction	3
loops	3
mass_spec	3
micro_environment	3
mir192	3
open-source	3
outlier	3
pca	3
pik3ca	3
primer	3
public_data	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
triple_negative	3
tutorial	3
web_services	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
gene_fusion	2
glioblastoma	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
lymphocytes	2
mage	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
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priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
survival	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
3utr	1
aging	1
akt	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
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biomarkers	1
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braf	1
brain_cancer	1
cables1	1
cell_cycle	1
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clusterin	1
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dimension_reduction	1
distance	1
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ecm	1
eno1	1
ensemble	1
ependymoma	1
er	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fgfr2	1
flow_cytometry	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
genetics	1
genoty	1
her2	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
luminal_subtype	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
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mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
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news	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
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passenger_genes	1
pbc	1
perturbation	1
pilot_study	1
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randomization	1
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rna-interference	1
selection_bias	1
shrna	1
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