Properties of balanced permutations. Export

@article{citeulike:4503402, abstract = {This paper takes a close look at balanced permutations, a recently developed sample reuse method with applications in bioinformatics. It turns out that balanced permutation reference distributions do not have the correct null behavior, which can be traced to their lack of a group structure. We find that they can give p-values that are too permissive to varying degrees. In particular the observed test statistic can be larger than that of all B balanced permutations of a data set with a probability much higher than 1/(B + 1), even under the null hypothesis.}, author = {Southworth, L. K. and Kim, S. K. and Owen, A. B.}, citeulike-article-id = {4503402}, citeulike-linkout-0 = {http://dx.doi.org/10.1089/cmb.2008.0144}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/19361331}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=19361331}, doi = {10.1089/cmb.2008.0144}, issn = {1557-8666}, journal = {Journal of computational biology : a journal of computational molecular cell biology}, keywords = {permutations, sampling, statistics}, month = {April}, number = {4}, pages = {625--638}, posted-at = {2009-11-08 22:54:44}, priority = {2}, title = {Properties of balanced permutations.}, url = {http://dx.doi.org/10.1089/cmb.2008.0144}, volume = {16}, year = {2009} }

TY - JOUR ID - citeulike:4503402 L3 - citeulike-article-id:4503402 N2 - This paper takes a close look at balanced permutations, a recently developed sample reuse method with applications in bioinformatics. It turns out that balanced permutation reference distributions do not have the correct null behavior, which can be traced to their lack of a group structure. We find that they can give p-values that are too permissive to varying degrees. In particular the observed test statistic can be larger than that of all B balanced permutations of a data set with a probability much higher than 1/(B + 1), even under the null hypothesis. IS - 4 JF - Journal of computational biology : a journal of computational molecular cell biology SN - 1557-8666 EP - 638 TI - Properties of balanced permutations. VL - 16 SP - 625 KW - permutations KW - sampling KW - statistics AU - Southworth, LK AU - Kim, SK AU - Owen, AB PY - 2009/04// UR - http://dx.doi.org/10.1089/cmb.2008.0144 ER -