jfr's Perou:CM [30 articles] Export

Recent papers posted to jfr's library by the author Perou:CM. You can also see everyone's Perou:CM.

	A compact VEGF signature associated with distant metastases and poor outcomes. [My Copy] BMC medicine, Vol. 7 (16 March 2009), 9. by Zhiyuan Hu, Cheng Fan, Chad Livasy, et al.Xiaping He, Daniel S. Oh, Matthew G. Ewend, Lisa A. Carey, Subbaya Subramanian, Robert West, Francis Ikpatt, Olufunmilayo I. Olopade, Matt van de Rijn, Charles M. Perou posted to survival metastasis gene_lists breast_cancer bio_signature by jfr on 2009-11-27 10:51:35 as along with 2 people ajaymalik frohike
	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted to subtypes rt-pcr proliferation pr luminal_subtype immunohistochemistry her2 er breast_cancer by jfr on 2009-11-15 14:43:06 as along with 1 person zufar
	Breast Cancer Subtypes and Response to Docetaxel in Node-Positive Breast Cancer: Use of an Immunohistochemical Definition in the BCIRG 001 Trial [My Copy] J Clin Oncol (9 February 2009), JCO.2008.18.1024. by Judith Hugh, John Hanson, Maggie C. Cheang, et al.Torsten O. Nielsen, Charles M. Perou, Charles Dumontet, John Reed, Maryla Krajewska, Isabelle Treilleux, Matthieu Rupin, Emmanuelle Magherini, John Mackey, Miguel Martin, Charles Vogel posted to trial therapy subtypes breast_cancer by jfr on 2009-11-09 13:36:25 as
	Merging two gene-expression studies via cross-platform normalization [My Copy] Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1154-1160. by Andrey A. Shabalin, Hakon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel posted to normalization gene_expression cross-platform by jfr on 2009-09-30 08:58:09 as along with 5 people and 1 group zufar shikin askrajiv aviad_work guhjy Bioinformatics
	Supervised risk predictor of breast cancer based on intrinsic subtypes. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 8. (10 March 2009), pp. 1160-1167. by Joel S. Parker, Michael Mullins, Maggie C. Cheang, et al.Samuel Leung, David Voduc, Tammi Vickery, Sherri Davies, Christiane Fauron, Xiaping He, Zhiyuan Hu, John F. Quackenbush, Inge J. Stijleman, Juan Palazzo, J. S. Marron, Andrew B. Nobel, Elaine Mardis, Torsten O. Nielsen, Matthew J. Ellis, Charles M. Perou, Philip S. Bernard posted to breast_cancer classification subtypes by jfr on 2009-07-22 11:45:47 as along with 3 people Zephyrus misonneh ptrobajo
	Triple-Negative Breast Cancer: Risk Factors to Potential Targets [My Copy] Clin Cancer Res, Vol. 14, No. 24. (15 December 2008), pp. 8010-8018. by Bryan P. Schneider, Eric P. Winer, William D. Foulkes, et al.Judy Garber, Charles M. Perou, Andrea Richardson, George W. Sledge, Lisa A. Carey posted to breast_cancer review subtypes target triple_negative by jfr on 2009-07-09 13:56:12 as along with 3 people and 1 group Zephyrus NaliniChilkov misonneh Breast Cancer Reading Club
	Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues. [My Copy] Clinical chemistry, Vol. 53, No. 7. (July 2007), pp. 1273-1279. by Michael Mullins, Laurent Perreard, John F. Quackenbush, et al.Nicholas Gauthier, Steven Bayer, Matthew Ellis, Joel Parker, Charles M. Perou, Aniko Szabo, Philip S. Bernard posted to breast_cancer ffpe microarray_technology rt-pcr by jfr on 2008-11-26 17:54:32 as along with 1 person and 1 group Zephyrus Breast Cancer Reading Club
	Basal-like breast cancer defined by five biomarkers has superior prognostic value than triple-negative phenotype. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 5. (1 March 2008), pp. 1368-1376. by Maggie C. Cheang, David Voduc, Chris Bajdik, et al.Samuel Leung, Steven McKinney, Stephen K. Chia, Charles M. Perou, Torsten O. Nielsen posted to breast_cancer classification triple_negative by jfr on 2008-08-05 17:28:14 as along with 4 people misonneh songpku NaliniChilkov Zephyrus
	RNA expression analysis of formalin-fixed paraffin-embedded tumors [My Copy] Laboratory Investigation, Vol. aop, No. current. by Shannon K. Penland, Temitope O. Keku, Chad Torrice, et al.Xiaping He, Janakiraman Krishnamurthy, Katherine A. Hoadley, John T. Woosley, Nancy E. Thomas, Charles M. Perou, Robert S. Sandler, Norman E. Sharpless, posted to ffpe microarray_technology by jfr on 2008-04-16 17:45:07 as along with 1 person guhjy
	EGFR associated expression profiles vary with breast tumor subtype [My Copy] BMC Genomics, Vol. 8 (31 July 2007), 258. by Katherine A. Hoadley, Victor J. Weigman, Cheng Fan, et al.Lynda R. Sawyer, Xiaping He, Melissa A. Troester, Carolyn I. Sartor, Thais Rieger-House, Philip S. Bernard, Lisa A. Carey, Charles M. Perou posted to breast_cancer egfr subtypes by jfr on 2008-02-05 11:28:33 as
	Clustering Microarray-Derived Gene Lists through Implicit Literature Relationships. [My Copy] Bioinformatics (30 May 2007) by Mark F F. Burkart, Jonathan D D. Wren, Jason I I. Herschkowitz, Charles M M. Perou, Harold R R. Garner posted to clustering gene_lists gene_set_analysis text-mining by jfr on 2008-02-04 11:43:52 as along with 5 people and 1 group guhjy yas dullhunk ghattem Barend T_lab
	FOXA1 expression in breast cancer--correlation with luminal subtype A and survival. [My Copy] Clin Cancer Res, Vol. 13, No. 15 Pt 1. (1 August 2007), pp. 4415-4421. by S. Badve, D. Turbin, M. A. Thorat, et al.A. Morimiya, T. O. Nielsen, C. M. Perou, S. Dunn, D. G. Huntsman, H. Nakshatri posted to breast_cancer marker subtypes by jfr on 2007-12-04 11:52:03 as
	The triple negative paradox: primary tumor chemosensitivity of breast cancer subtypes. [My Copy] Clin Cancer Res, Vol. 13, No. 8. (15 April 2007), pp. 2329-2334. by L. A. Carey, E. C. Dees, L. Sawyer, et al.L. Gatti, D. T. Moore, F. Collichio, D. W. Ollila, C. I. Sartor, M. L. Graham, C. M. Perou posted to basal_subtype breast_cancer by jfr on 2007-07-09 13:21:36 as along with 1 person edwardli
	Gene expression profiles do not consistently predict the clinical treatment response in locally advanced breast cancer. [My Copy] Mol Cancer Ther, Vol. 5, No. 11. (November 2006), pp. 2914-2918. by T. Sørlie, C. M. Perou, C. Fan, et al.S. Geisler, T. Aas, A. Nobel, G. Anker, L. A. Akslen, D. Botstein, A. L. Børresen-Dale, P. E. Lønning posted to breast_cancer subtypes treatment by jfr on 2007-05-14 15:05:10 as
	Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas [My Copy] Breast Cancer Research, Vol. 9 (16 January 2007), R5. by Stephen J. Chanock, Laurie Burdett, Meredith Yeager, et al.Victor Llaca, Anita Langerod, Shafaq Presswala, Rolf Kaaresen, Robert L. Strausberg, Daniela S. Gerhard, Vessela Kristensen, Charles M. Perou, Anne-Lise Borresen-Dale posted to breast_cancer mutations by jfr on 2007-05-14 14:46:02 as along with 1 person yuzhenye
	Gene expression patterns associated with p53 status in breast cancer [My Copy] BMC Cancer, Vol. 6 (06 December 2006), 276. by Melissa A. Troester, Jason I. Herschkowitz, Daniel S. Oh, et al.Xiaping He, Katherine A. Hoadley, Claire S. Barbier, Charles M. Perou posted to bio_signature breast_cancer p53 by jfr on 2007-05-11 18:07:35 as
	Identification of a basal-like subtype of breast ductal carcinoma in situ. [My Copy] Hum Pathol, Vol. 38, No. 2. (February 2007), pp. 197-204. by C. A. Livasy, C. M. Perou, G. Karaca, et al.D. W. Cowan, D. Maia, S. Jackson, C. K. Tse, S. Nyante, R. C. Millikan posted to basal_subtype breast_cancer by jfr on 2007-05-11 15:01:28 as along with 1 person ruszczyk
	A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. [My Copy] PLoS Med, Vol. 3, No. 12. (December 2006) by D. S. Shames, L. Girard, B. Gao, et al.M. Sato, C. M. Lewis, N. Shivapurkar, A. Jiang, C. M. Perou, Y. H. Kim, J. R. Pollack, K. M. Fong, C. L. Lam, M. Wong, Y. Shyr, R. Nanda, O. I. Olopade, W. Gerald, D. M. Euhus, J. W. Shay, A. F. Gazdar, J. D. Minna posted to methylation by jfr on 2007-05-10 16:56:30 as along with 2 people epigenetics blackm0k
	Concordance among gene-expression-based predictors for breast cancer. [My Copy] N Engl J Med, Vol. 355, No. 6. (10 August 2006), pp. 560-569. by C. Fan, D. S. Oh, L. Wessels, et al.B. Weigelt, D. S. Nuyten, A. B. Nobel, L. J. van't Veer, C. M. Perou posted to classification breast_cancer by jfr on 2007-02-06 17:24:49 as along with 6 people Zephyrus zufar frohike misonneh cberry jdiezperezj
	Phenotypic evaluation of the basal-like subtype of invasive breast carcinoma. [My Copy] Mod Pathol, Vol. 19, No. 2. (February 2006), pp. 264-271. by C. A. Livasy, G. Karaca, R. Nanda, et al.M. S. Tretiakova, O. I. Olopade, D. T. Moore, C. M. Perou posted to tma subtypes breast_cancer by jfr on 2007-02-06 12:02:12 as along with 1 person Zephyrus
	Breast cancer molecular subtypes respond differently to preoperative chemotherapy. [My Copy] Clin Cancer Res, Vol. 11, No. 16. (15 August 2005), pp. 5678-5685. by R. Rouzier, C. M. Perou, W. F. Symmans, et al.N. Ibrahim, M. Cristofanilli, K. Anderson, K. R. Hess, J. Stec, M. Ayers, P. Wagner, P. Morandi, C. Fan, I. Rabiul, J. S. Ross, G. N. Hortobagyi, L. Pusztai posted to subtypes breast_cancer by jfr on 2007-01-29 16:13:46 as along with 1 person edwardli
	The molecular portraits of breast tumors are conserved across microarray platforms. [My Copy] BMC genomics, Vol. 7, No. 1. (2006), 96. by Zhiyuan Hu, Cheng Fan, Daniel S. Oh, et al.J. S. Marron, Xiaping He, Bahjat F. Qaqish, Chad Livasy, Lisa A. Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew G. Ewend, Lynda R. Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Ruiz Orrico, Donna Dreher, Juan P. Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John F. Quackenbush, Matthew J. Ellis, Olufunmilayo I. Olopade, Philip S. Bernard, Charles M. Perou posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 15:13:29 as along with 4 people ptrobajo giovenko frohike macavity1g
	Classification and risk stratification of invasive breast carcinomas using a real-time quantitative RT-PCR assay [My Copy] Breast Cancer Research, Vol. 8 (20 April 2006), R23. by Laurent Perreard, Cheng Fan, John F. Quackenbush, et al.Michael Mullins, Nicholas P. Gauthier, Edward Nelson, Mary Mone, Heidi Hansen, Saundra S. Buys, Karen Rasmussen, Alejandra R. Orrico, Donna Dreher, Rhonda Walters, Joel Parker, Zhiyuan Hu, Xiaping He, Juan P. Palazzo, Olufunmilayo I. Olopade, Aniko Szabo, Charles M. Perou, Philip S. Bernard posted to rt-pcr classification breast_cancer by jfr on 2007-01-19 14:57:09 as
	Immunohistochemical and clinical characterization of the basal-like subtype of invasive breast carcinoma. [My Copy] Clin Cancer Res, Vol. 10, No. 16. (15 August 2004), pp. 5367-5374. by T. O. Nielsen, F. D. Hsu, K. Jensen, et al.M. Cheang, G. Karaca, Z. Hu, T. Hernandez-Boussard, C. Livasy, D. Cowan, L. Dressler, L. A. Akslen, J. Ragaz, A. M. Gown, C. B. Gilks, M. van de Rijn, C. M. Perou posted to subtypes breast_cancer by jfr on 2007-01-18 10:38:05 as along with 1 person Zephyrus
	Mutation of GATA3 in human breast tumors. [My Copy] Oncogene, Vol. 23, No. 46. (7 October 2004), pp. 7669-7678. by J. Usary, V. Llaca, G. Karaca, et al.S. Presswala, M. Karaca, X. He, A. Langerød, R. Kåresen, D. S. Oh, L. G. Dressler, P. E. Lønning, R. L. Strausberg, S. Chanock, A. L. Børresen-Dale, C. M. Perou posted to estrogen breast_cancer by jfr on 2007-01-17 15:57:30 as
	Statistical modeling for selecting housekeeper genes. [My Copy] Genome Biol, Vol. 5, No. 8. (2004) by A. Szabo, C. M. Perou, M. Karaca, L. Perreard, J. F. Quackenbush, P. S. Bernard posted to rt-pcr normalization by jfr on 2007-01-09 12:05:33 as along with 1 person brutledge
	Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874. by T. Sørlie, C. M. Perou, R. Tibshirani, et al.T. Aas, S. Geisler, H. Johnsen, T. Hastie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, T. Thorsen, H. Quist, J. C. Matese, P. O. Brown, D. Botstein, P. Eystein Lønning, A. L. Børresen-Dale posted to breast_cancer class_discovery by jfr on 2006-02-14 07:49:07 as along with 5 people Zephyrus windman83 frohike macavity1g evaf
	Molecular portraits of human breast tumours. [My Copy] Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752. by C. M. Perou, T. Sørlie, M. B. Eisen, et al.M. van de Rijn, S. S. Jeffrey, C. A. Rees, J. R. Pollack, D. T. Ross, H. Johnsen, L. A. Akslen, O. Fluge, A. Pergamenschikov, C. Williams, S. X. Zhu, P. E. Lønning, A. L. Børresen-Dale, P. O. Brown, D. Botstein posted to breast_cancer class_discovery by jfr on 2006-02-14 07:48:29 as along with 6 people lwaldron Zephyrus misonneh ruszczyk frohike evaf
	Repeated observation of breast tumor subtypes in independent gene expression data sets [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423. by Therese SÃ¸rlie, Robert Tibshirani, Joel Parker, et al.Trevor Hastie, J. S. Marron, Andrew Nobel, Shibing Deng, Hilde Johnsen, Robert Pesich, Stephanie Geisler, Janos Demeter, Charles M. Perou, Per E. LÃ¸nning, Patrick O. Brown, Anne-Lise BÃ¸rresen-Dale, David Botstein posted to breast_cancer class_discovery by jfr on 2006-02-14 07:43:53 as along with 5 people ptrobajo ipark-kaist Zephyrus jo_davies frohike
	A custom microarray platform for analysis of microRNA gene expression. [My Copy] Nat Methods, Vol. 1, No. 1. (October 2004), pp. 47-53. by J. M. Thomson, J. Parker, C. M. Perou, S. M. Hammond posted to microarray_protocol mirna by jfr on 2005-08-14 17:14:00 as along with 2 people tardigrade bootsy

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breast_cancer	477
mirna	348
review	345
software	275
classification	272
colon_cancer	234
gene_expression	176
methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
bioinformatics	122
clustering	121
feature_selection	106
meta-analysis	97
affy	86
database	82
therapy	80
mirna_target	77
gene_set_analysis	69
array-cgh	69
crc_bib	69
regulation	67
low_level	66
rt-pcr	64
systems_biology	63
genomics	60
pathway_analysis	60
subtypes	58
snp-arrays	57
annotation	57
comment	53
quality_control	49
metastasis	47
normalization	46
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
microarray_analysis	40
estrogen	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
protein_interaction	35
alternative_splicing	35
progression	35
markers	35
fdr	34
snp	33
methylation	32
r	31
standards	29
mutation	28
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class_discovery	28
exon_arrays	25
jfrbib	24
two-color	24
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model	20
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technology	17
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stem_cell	16
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illumina	16
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pten	11
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protocol	11
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visualization	10
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tgfb	10
mirna_regulation	10
msi	9
inter-laboratory	9
probe_design	9
segmentation	9
e2f1	8
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chemotherapy	8
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chip-seq	8
boutique_arrays	8
personalized_medicine	8
myc	8
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editorial	8
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18q_loh	7
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plos_rules	7
hpc	6
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er	6
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stem	6
motif	6
correlation	6
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ontology	6
nci60	6
graphs	6
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pr	4
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lims	4
mir192	4
grading	4
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go	4
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interaction	3
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low-level	3
wnt	3
svm	3
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er-positive	3
copa	3
mage	3
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in-situ	3
roc	3
letter	3
pik3ca	3
evolution	3
hapmap	3
loops	3
cross-study	3
agilent	3
stability	3
glioblastoma	3
triple_negative	3
ontologies	3
biomarkers	3
pca	3
web_server	3
estradiol	2
guidelines	2
lymphocytes	2
ephb	2
ranked_lists	2
luminal_subtype	2
batch-effect	2
filtering	2
cloud_computing	2
serm	2
permutations	2
8q24	2
recommendation	2
protein_networks	2
sweave	2
mir20a	2
20q	2
diagnostic	2
akt	2
thyroid	2
chemo	2
qtl	2
compression	2
oncomine	2
caching	2
bcatenin	2
flow_cytometry	2
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tbfs	2
upd	2
mir215	2
translational	2
alignment	2
dna_damage	2
semi-supervised	2
cell_cycle	2
stageiii	2
dfs	2
smad	2
snp_arrays	2
target	2
web_resource	2
differential_expression	2
mutual_information	2
protein_microarray	2
meeting_report	2
priors	2
rin	2
cetuximab	2
gene_fusion	2
local_recurrence	2
cdk8	2
bayesian	1
invasion	1
assembly	1
oncogene	1
mirna222	1
mir16-1	1
model-based	1
mir199	1
mir135	1
single_cell	1
smad7	1
xml	1
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mir449	1
target_discovery	1
est_analysis	1
funding	1
mir126	1
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circulating_tumor_cells	1
braf	1
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au-rich	1
wiki	1
apoptosis	1
aroma	1
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biclustering	1
beads	1
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dcc	1
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association_studies	1
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taxane	1
er-negative	1
distance	1
melanoma	1
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454	1
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p21	1
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met	1
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erg	1
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markup	1
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ret	1
gene_networks	1
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metagene	1
cables1	1
mixture_models	1
prb	1
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fgfr2	1
fantom	1
signaling	1
ecm	1
translocation	1
il8	1
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concordance	1
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mir101	1
graph_approach	1
peripheral_blood	1
news	1
mir203	1
mir15a	1
mcm7	1
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resampling	1
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tcga	1
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rnai	1
ndrg4	1
ependymoma	1
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hypoxia	1
mirna221	1
microrna	1
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mir155	1
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mir143	1
bambi	1
latex	1
genoty	1
fish	1
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asco	1
genetics	1
mrna-seq	1
rb	1
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mir216a	1
aging	1
latent	1
translation	1
pattern_discovery	1
pbc	1
early-stage	1
eno1	1
study_design	1
clusterin	1
sampling	1

jfr's Perou:CM [30 articles] Export

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