CiteULike: jfr's Spellman:PT [3 articles]

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	Sparse combinatorial inference with an application in cancer biology [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 265-271. by Sach Mukherjee, Steven Pelech, Richard M. Neve, et al.Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed posted to no-tag by jfr on 2009-03-18 14:22:02 as along with 3 people ipark-kaist mstumpf imina
	A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 489. by Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, et al.Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald S. Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert, Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma posted to standards software by jfr on 2007-01-11 13:52:57 as along with 4 people bertelsen shikin zakmck dansullivanblk
	Genomic and transcriptional aberrations linked to breast cancer pathophysiologies [My Copy] Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541. by Koei Chin, Sandy Devries, Jane Fridlyand, et al.Paul T. Spellman, Ritu Roydasgupta, Wen-Lin Kuo, Anna Lapuk, Richard M. Neve, Zuwei Qian, Tom Ryder posted to breast_cancer copy-number integration by jfr on 2007-01-10 13:15:54 as along with 4 people engelhardt oelemento chrisamiller frohike

breast_cancer	483
mirna	356
review	347
software	279
classification	275
colon_cancer	236
gene_expression	179
methodology	169
copy-number	162
network	148
integration	139
microarray_technology	133
clustering	125
bioinformatics	122
feature_selection	107
meta-analysis	97
affy	86
database	84
therapy	80
mirna_target	79
gene_set_analysis	71
crc_bib	69
array-cgh	69
regulation	67
low_level	66
rt-pcr	64
systems_biology	63
pathway_analysis	61
genomics	60
subtypes	58
annotation	57
snp-arrays	57
comment	54
quality_control	51
metastasis	48
normalization	46
mutations	43
deep_sequencing	42
prognosis	42
ffpe	41
microarray_analysis	41
estrogen	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
progression	36
alternative_splicing	35
protein_interaction	35
fdr	35
markers	35
snp	34
r	33
methylation	32
standards	30
class_discovery	28
mutation	28
tamoxifen	28
exon_arrays	25
mir17-92	25
jfrbib	24
two-color	24
experiment_design	23
ovarian_cancer	23
microarray_protocol	23
pathway	22
comparison	21
co-expression	21
brca	21
tfbs	20
model	20
kras	20
survival_analysis	20
treatment	19
functional_analysis	19
p53	19
platform_comparison	18
multiple_testing	18
technology	17
illumina	17
module_detection	16
biomarker	16
stem_cell	16
jfrbib04-09	16
evaluation	16
chip-chip	16
text-mining	15
nmf	15
antisense	15
reproducible_research	15
sequencing	14
erbb	14
bio_signature	14
basal_subtype	14
stageii	13
maqc	13
tma	13
staging	13
cell_line	13
rna_quality	13
lung_cancer	13
egfr	13
gene_lists	12
marker	12
gene_ontology	12
cnv	12
genotyping	12
proliferation	11
loh	11
genome_browser	11
drug_discovery	11
semantic_web	11
pten	11
protocol	11
missing_values	11
visualization	10
mirna_regulation	10
tissue_specificity	10
disease_genes	10
immunohistochemistry	10
tgfb	10
control_genes	10
probe_design	9
inter-laboratory	9
segmentation	9
msi	9
myc	9
sample_size	8
can_genes	8
chemotherapy	8
e2f1	8
boutique_arrays	8
consensus_clustering	8
time-course	8
editorial	8
chip-seq	8
personalized_medicine	8
er	7
nci60	7
18q_loh	7
lymphoma	7
plos_rules	7
mir21	7
plos_start	7
go	7
validation	7
tiling_array	7
graphs	6
motif	6
leukemia	6
non-coding	6
promoters	6
ontology	6
serum	6
community	6
hpc	6
stem	6
trial	6
correlation	6
read_mapping	6
gene_interaction	6
cin	5
plos_primer	5
gwas	5
prioritization	5
grid_computing	5
her2	5
prostate_cancer	5
survival	5
radiation	5
functional_genomics	5
machine_learning	5
cross-platform	5
gene_pairs	5
web_services	4
wnt	4
resource	4
public_data	4
lims	4
pr	4
data_curation	4
functional_classification	4
grading	4
image_analysis	4
mirna_cluster	4
mir34	4
pooling	4
biobank	4
open-source	4
mir192	4
stroma	3
primer	3
bim	3
confounders	3
tutorial	3
mass_spec	3
interaction	3
small_molecule	3
outlier	3
apc	3
low-level	3
svm	3
sop	3
epigenetics	3
er-positive	3
mage	3
filtering	3
sage	3
ngs	3
in-situ	3
roc	3
letter	3
pik3ca	3
evolution	3
luminal_subtype	3
8q24	3
micro_environment	3
hapmap	3
loops	3
cross-study	3
projection	3
agilent	3
stability	3
glioblastoma	3
triple_negative	3
ontologies	3
biomarkers	3
pca	3
web_server	3
chromatin	3
copa	3
dna_damage	2
semi-supervised	2
snp_arrays	2
ephb	2
differential_expression	2
caching	2
mir20a	2
stem_cells	2
target	2
compression	2
alignment	2
estradiol	2
serm	2
bcatenin	2
microarray_data	2
permutations	2
diagnostic	2
mir143	2
akt	2
smad	2
guidelines	2
thyroid	2
qtl	2
cloud_computing	2
cell_cycle	2
tbfs	2
recommendation	2
priors	2
mutual_information	2
batch-effect	2
sweave	2
web_resource	2
rin	2
upd	2
cetuximab	2
stageiii	2
protein_microarray	2
lymphocytes	2
dfs	2
20q	2
mir145	2
gene_fusion	2
protein_networks	2
mir215	2
flow_cytometry	2
chemo	2
meeting_report	2
translational	2
local_recurrence	2
fgfr2	2
ranked_lists	2
oncomine	2
cdk8	2
braf	1
wiki	1
aroma	1
rna-interference	1
invasion	1
dcc	1
plasma	1
gene_ranking	1
cross-species	1
dasl	1
python	1
lin28	1
cervical_cancer	1
shrna	1
disease	1
perturbation	1
fgf10	1
network_analysis	1
p21	1
in_situ_hybridization	1
bayesian	1
metastatis	1
xml	1
early-stage	1
tissue_origin	1
selection_bias	1
reproducibility	1
3utr	1
pilot_study	1
13q	1
dye_bias	1
driver_genes	1
metagene	1
meta_analysis	1
passenger_genes	1
prb	1
cancer_hallmarks	1
modules	1
erg	1
nomogram	1
graph_approach	1
peripheral_blood	1
power_analysis	1
ret	1
cables1	1
mixture_models	1
data_mining	1
rb	1
mir216a	1
translation	1
thyroid_cancer	1
assembly	1
smad7	1
pre-post	1
circulating_tumor_cells	1
neural_networks	1
fantom	1
signaling	1
mir-106b-25	1
breas_cancer	1
ndrg4	1
melanoma	1
ccnd1	1
gene_clusters	1
oncogene_addiction	1
454	1
gene_function_prediction	1
mirna221	1
pattern_discovery	1
mirna_discovery	1
taxane	1
stat3	1
mrna-seq	1
latent	1
mir16-1	1
eno1	1
formalization	1
met	1
ecm	1
bmp	1
brain_cancer	1
randomization	1
association_studies	1
mcm7	1
single_cell	1
grade_index	1
markup	1
concordance	1
gene_networks	1
mir101	1
genoty	1
news	1
cross_platform	1
mir15a	1
genome_assembly	1
resampling	1
tcga	1
er-negative	1
rnai	1
aurora_kinase	1
ucs	1
translocation	1
il8	1
mir217	1
mir155	1
gastric_cancer	1
simulation	1
bambi	1
latex	1
mir135	1
fish	1
mapk14	1
ensemble	1
dimension_reduction	1
asco	1
distance	1
mir203	1
mir196a-2	1
formats	1
transfection	1
pbc	1
ependymoma	1
study_design	1
clusterin	1
sampling	1
data_publication	1
hypoxia	1
microrna	1
oncogene	1
mirna222	1
mir31	1
mir199	1
genetics	1
mir449	1
target_discovery	1
myb	1
funding	1
aging	1
model-based	1
au-rich	1
est_analysis	1
apoptosis	1
mir126	1
module	1
biclustering	1
beads	1
pancreatic_cancer	1
mirna_pathway	1

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