jfr's Zhang:L [25 articles] Export Sort

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	Evaluation of cDNA Microarray Data by Multiple Clones Mapping to the Same Transcript. [My Copy] Omics : a journal of integrative biology (28 August 2009) by Dong Wang, Chenguang Wang, Lin Zhang, et al.Hui Xiao, Xiaopei Shen, Liping Ren, Wenyuan Zhao, Guini Hong, Yuannv Zhang, Jing Zhu, Min Zhang, Da Yang, Wencai Ma, Zheng Guo posted to two-color low-level by jfr on 2009-12-02 10:08:13 as
	Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1662-1668. by Min Zhang, Lin Zhang, Jinfeng Zou, et al.Chen Yao, Hui Xiao, Qing Liu, Jing Wang, Dong Wang, Chenguang Wang, Zheng Guo posted to reproducibility meta-analysis differential_expression cross-study by jfr on 2009-11-27 10:40:28 as along with 5 people and 1 group guhjy rdiaz dswan shikin renatomilani Bioinformatics
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to pathway_analysis gene_set_analysis feature_selection by jfr on 2009-11-03 17:20:53 as along with 4 people praisan rdiaz ipark-kaist guhjy
	mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. [My Copy] Nature methods, Vol. 5, No. 9. (September 2008), pp. 813-819. by M. Hammell, D. Long, L. Zhang, et al.A. Lee, C. S. Carmack, M. Han, Y. Ding, V. Ambros posted to mirna mirna_target by jfr on 2009-04-14 11:57:28 as along with 2 people and 1 group pengchy gbloeb microRNA
	A novel method incorporating gene ontology information for unsupervised clustering and feature selection. [My Copy] PLoS ONE, Vol. 3, No. 12. (2008) by S. Srivastava, L. Zhang, R. Jin, C. Chan posted to clustering feature_selection gene_ontology methodology by jfr on 2009-03-16 16:45:54 as
	Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 237-242. by Lina Chen, Liangcai Zhang, Yan Zhao, et al.Liangde Xu, Yukui Shang, Qian Wang, Wan Li, Hong Wang, Xia Li posted to pathway_analysis snp by jfr on 2009-03-13 13:38:19 as along with 8 people dolchan kimorley zufar guhjy shikin tg150 imina pkonings
	A stable iterative method for refining discriminative gene clusters. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by M. Xu, M. Zhu, L. Zhang posted to clustering by jfr on 2009-02-18 13:49:04 as
	The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9, No. Suppl 9. (2008), S10. by Leming Shi, Wendell D. Jones, Roderick V. Jensen, et al.Stephen C. Harris, Roger G. Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan M. Cao, Tzu-Ming M. Chu, Patrick J. Collins, Xiao-Hui H. Fan, Felix W. Frueh, James C. Fuscoe, Xu Guo, Jing Han, Damir Herman, Huixiao Hong, Ernest S. Kawasaki, Quan-Zhen Z. Li, Yuling Luo, Yunqing Ma, Nan Mei, Ron L. Peterson, Raj K. Puri, Richard Shippy, Zhenqiang Su, Yongming Andrew A. Sun, Hongmei Sun, Brett Thorn, Yaron Turpaz, Charles Wang, Sue Jane J. Wang, Janet A. Warrington, James C. Willey, Jie Wu, Qian Xie, Liang Zhang, Lu Zhang, Sheng Zhong, Russell D. Wolfinger, Weida Tong posted to maqc by jfr on 2009-01-08 15:39:57 as along with 21 people and 1 group bertelsen frohike bsamal maximilianh GustavoG mayercd Zephyrus daforerog oliviawi zufar bandrewfox lwaldron mdharsee shikin rdiaz ugengma dswan guhjy GeeSharpMinor ptrobajo Jonesy Bioinformatics
	Apparently low reproducibility of true differential expression discoveries in microarray studies. [My Copy] Bioinformatics (Oxford, England) (16 July 2008) by Min Zhang, Chen Yao, Zheng Guo, et al.Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li posted to gene_expression microarray_analysis by jfr on 2008-11-24 15:30:44 as along with 8 people surajitray Zephyrus VGreiff guhjy renatomilani neils GeeSharpMinor shigepong
	Rapid whole-genome mutational profiling using next-generation sequencing technologies [My Copy] Genome research In Genome Research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to deep_sequencing mutation by jfr on 2008-11-17 14:28:18 as along with 7 people n00c robsyme druvus skoddet yupu jmcq GeeSharpMinor
	mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein\|[ndash]\|enriched transcripts [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 813-819. by Molly Hammell, Dang Long, Liang Zhang, et al.Andrew Lee, C. Steven Carmack, Min Han, Ye Ding, Victor Ambros posted to mirna mirna_target by jfr on 2008-10-31 12:49:49 as along with 5 people and 1 group jodavila sterovetta valeriehilgers heliopais maralena microRNA
	Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18654-18659. by Lanlan Shen, Minoru Toyota, Yutaka Kondo, et al.E. Lin, Li Zhang, Yi Guo, Natalie S. Hernandez, Xinli Chen, Saira Ahmed, Kazuo Konishi, Stanley R. Hamilton, Jean-Pierre J. Issa posted to colon_cancer integration mutations subtypes by jfr on 2008-09-03 14:59:52 as along with 1 person epigenetics
	microRNAs exhibit high frequency genomic alterations in human cancer. [My Copy] Proc Natl Acad Sci U S A (5 June 2006) by Lin Zhang, Jia Huang, Nuo Yang, et al.Joel Greshock, Molly S S. Megraw, Antonis Giannakakis, Shun Liang, Tara L L. Naylor, Andrea Barchetti, Michelle R R. Ward, George Yao, Angelica Medina, Ann O'brien-Jenkins, Dionyssios Katsaros, Artemis Hatzigeorgiou, Phyllis A A. Gimotty, Barbara L L. Weber, George Coukos posted to copy-number mirna by jfr on 2008-06-20 11:53:33 as along with 7 people and 2 groups abhattac eckart_bindewald mtagaya cmm ealloza Garamonfok maralena FAB-lab BioinfoCIPF
	Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers. [My Copy] Nucleic Acids Res (21 June 2007) by Zhenbao Yu, Zhen Li, Normand Jolicoeur, et al.Linhua Zhang, Yves Fortin, Edwin Wang, Meiqun Wu, Shi-Hsiang H. Shen posted to mirna snp by jfr on 2008-04-21 09:23:43 as along with 2 people and 2 groups andersbj cabbagezs Bioinformatics microRNA
	Integration of statistical inference methods and a novel control measure to improve sensitivity and specificity of data analysis in expression profiling studies. [My Copy] J Biomed Inform, Vol. 40, No. 5. (October 2007), pp. 552-560. by S. Zang, R. Guo, L. Zhang, Y. Lu posted to methodology by jfr on 2008-04-16 17:48:31 as along with 2 people guhjy renatomilani
	Extracting Three-way Gene Interactions from Microarray Data. [My Copy] Bioinformatics (5 October 2007) by Jiexin Zhang, Yuan Ji, Li Zhang posted to interaction by jfr on 2008-02-05 11:58:11 as along with 3 people tmmurali shigepong waszak
	Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2566-2572. by Chunlei Wu, Haitao Zhao, Keith Baggerly, Roberto Carta, Li Zhang posted to affy low_level by jfr on 2008-02-04 11:50:29 as along with 1 person niallhaslam
	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted to protein_interaction by jfr on 2008-02-04 11:42:33 as along with 22 people and 2 groups frohike yaredo fesousa aelef dragonrez kuhn okarsligil lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz Evangelia csanford ksiek Complex Networks Bioinformatics
	An estrogen receptor-negative breast cancer subset characterized by a hormonally regulated transcriptional program and response to androgen [My Copy] Oncogene, Vol. aop, No. current. by A. S. Doane, M. Danso, P. Lal, et al.M. Donaton, L. Zhang, C. Hudis, W. L. Gerald posted to breast_cancer by jfr on 2007-11-20 16:19:51 as
	Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression [My Copy] BMC Genomics, Vol. 7 (15 June 2006), 153. by Lanmin Zhang, Sean J. Yoder, Steven A. Enkemann posted to affy integration microarray_technology by jfr on 2006-12-15 16:55:31 as
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted to array-cgh integration by jfr on 2006-12-15 16:34:04 as along with 4 people aezrin srp33 chrisamiller bioguru2000
	Evaluation of DNA microarray results with quantitative gene expression platforms [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1115-1122. by Roger D. Canales, Yuling Luo, James C. Willey, et al.Bradley Austermiller, Catalin C. Barbacioru, Cecilie Boysen, Kathryn Hunkapiller, Roderick V. Jensen, Charles R. Knight, Kathleen Y. Lee, Yunqing Ma, Botoul Maqsodi, Adam Papallo, Elizabeth H. Peters, Karen Poulter, Patricia L. Ruppel, Raymond R. Samaha, Leming Shi, Wen Yang, Lu Zhang, Federico M. Goodsaid posted to microarray_technology by jfr on 2006-11-07 14:02:54 as along with 6 people and 1 group VGreiff guhjy giovanni qmwwallace cberry giovenko GeschwindLab
	Rat toxicogenomic study reveals analytical consistency across microarray platforms [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1162-1169. by Lei Guo, Edward K. Lobenhofer, Charles Wang, et al.Richard Shippy, Stephen C. Harris, Lu Zhang, Nan Mei, Tao Chen, Damir Herman, Federico M. Goodsaid, Patrick Hurban, Kenneth L. Phillips, Jun Xu, Xutao Deng, Yongming A. Sun, Weida Tong, Yvonne P. Dragan, Leming Shi posted to microarray_technology by jfr on 2006-11-07 14:01:23 as along with 4 people rdiaz jdiggans cberry giovenko
	The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. [My Copy] Nature biotechnology, Vol. 24, No. 9. (September 2006), pp. 1151-1161. by , L. Shi, L. H. Reid, et al.W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, W. Slikker posted to microarray_technology by jfr on 2006-11-07 14:00:38 as along with 18 people VGreiff bertelsen lwaldron daforerog rdiaz jo_davies pengchy kentsis jdiggans qmwwallace cberry shigepong caseybrown giovenko shikin slevy03 guhjy vmsr
	Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project [My Copy] Nature Biotechnology, Vol. 24, No. 9. (08 September 2006), pp. 1140-1150. by Tucker A. Patterson, Edward K. Lobenhofer, Stephanie B. Fulmer-Smentek, et al.Patrick J. Collins, Tzu-Ming Chu, Wenjun Bao, Hong Fang, Ernest S. Kawasaki, Janet Hager, Irina R. Tikhonova, Stephen J. Walker, Liang Zhang, Patrick Hurban, Francoise de Longueville, James C. Fuscoe, Weida Tong, Leming Shi, Russell D. Wolfinger posted to microarray_technology by jfr on 2006-11-07 13:59:28 as along with 5 people frohike rdiaz cberry ghattem giovenko

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colon_cancer	236
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tissue_specificity	10
disease_genes	10
immunohistochemistry	10
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probe_design	9
inter-laboratory	9
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network_analysis	1
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meta_analysis	1
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cancer_hallmarks	1
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nomogram	1
graph_approach	1
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pre-post	1
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mir-106b-25	1
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gene_clusters	1
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454	1
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latent	1
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eno1	1
formalization	1
met	1
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brain_cancer	1
randomization	1
association_studies	1
mcm7	1
single_cell	1
grade_index	1
markup	1
concordance	1
gene_networks	1
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genoty	1
news	1
cross_platform	1
mir15a	1
genome_assembly	1
resampling	1
tcga	1
er-negative	1
rnai	1
aurora_kinase	1
ucs	1
translocation	1
il8	1
mir217	1
mir155	1
gastric_cancer	1
simulation	1
bambi	1
latex	1
mir135	1
fish	1
mapk14	1
ensemble	1
dimension_reduction	1
asco	1
distance	1
mir203	1
mir196a-2	1
formats	1
transfection	1
pbc	1
ependymoma	1
study_design	1
clusterin	1
sampling	1
data_publication	1
hypoxia	1
microrna	1
oncogene	1
mirna222	1
mir31	1
mir199	1
genetics	1
mir449	1
target_discovery	1
myb	1
funding	1
aging	1
model-based	1
au-rich	1
est_analysis	1
apoptosis	1
mir126	1
module	1
biclustering	1
beads	1
pancreatic_cancer	1
mirna_pathway	1

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