jfr's library 2751 articles Export

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	Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7131-7136. by Michal Sheffer, Manny D. Bacolod, Or Zuk, et al.Sarah F. Giardina, Hanna Pincas, Francis Barany, Philip B. Paty, William L. Gerald, Daniel A. Notterman, Eytan Domany posted to survival copy-number colon_cancer by jfr on 2009-11-08 23:03:53 as along with 2 people kdpreter rdiaz
	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	Molecular classification of solid tumours: towards pathway-driven therapeutics. [My Copy] British journal of cancer, Vol. 100, No. 10. (19 May 2009), pp. 1517-1522. by C. Swanton, C. Caldas posted to subtypes review personalized_medicine breast_cancer by jfr on 2009-11-08 22:22:43 as along with 5 people rdiaz tonamswish guhjy xtizon giovenko
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted to pathway_analysis network modules gene_lists by jfr on 2009-11-02 15:54:31 as along with 8 people and 1 group bertelsen jmstat guhjy mspivako renatomilani fenghezi shikin roys Journal picks
	Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics [My Copy] PLoS ONE, Vol. 4, No. 2. (19 February 2009), e4523. by Joseph E. Lucas, Carlos M. Carvalho, Julia L. Chen, Jen-Tsan Chi, Mike West posted to projection gene_lists cross-study cross-platform by jfr on 2009-09-30 10:11:25 as along with 4 people zufar frohike jmstat bertelsen
	Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 2. (15 January 2009), pp. 441-451. by F. Andre, B. Job, P. Dessen, et al.A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, S. Delaloge, G. N. Hortobagyi, W. F. Symmans, V. Lazar, L. Pusztai posted to array-cgh breast_cancer copy-number gene_expression integration by jfr on 2009-07-06 12:41:41 as
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to breast_cancer network prognosis by jfr on 2009-04-28 13:55:26 as along with 14 people and 1 group ukhan zufar guhjy frohike fenghezi ptrobajo jaimie nedwards dakelley absterga phoenixzxl grahamc provero brianb cube_and_beyond
	Allelic imbalance sequencing reveals that single-nucleotide polymorphisms frequently alter microRNA-directed repression [My Copy] Nature Biotechnology, Vol. 27, No. 5. (26 April 2009), pp. 472-477. by Jinkuk Kim, David P. Bartel posted to snp mirna_regulation mirna by jfr on 2009-11-08 23:34:07 as along with 7 people and 1 group guhjy fenghezi giovanni jbhiatt daforerog samgj valeriehilgers microRNA
	Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer [My Copy] J Clin Oncol, Vol. 27, No. 19. (1 July 2009), pp. 3185-3191. by Cornelia Liedtke, Christos Hatzis, William F. Symmans, et al.Christine Desmedt, Benjamin Haibe-Kains, Vicente Valero, Henry Kuerer, Gabriel N. Hortobagyi, Martine Piccart-Gebhart, Christos Sotiriou, Lajos Pusztai posted to gene_expression chemotherapy breast_cancer by jfr on 2009-11-08 22:33:09 as
	The use of gene ontology evidence codes in preventing classifier assessment bias [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1173-1177. by Mark F. Rogers, Asa Ben-Hur posted to gene_ontology classification by jfr on 2009-11-03 17:15:49 as along with 4 people kshameer vkwn rdiaz dullhunk
	Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1078-1079. by Björn Nilsson, Mikael Johansson, Fatima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert posted to software segmentation copy-number by jfr on 2009-11-02 17:27:22 as along with 3 people daed rdiaz pkonings
	Human microRNAs co-silence in well-separated groups and have different predicted essentialities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1063-1069. by Gábor Boross, Katalin Orosz, Illés J. Farkas posted to mirna by jfr on 2009-11-02 17:23:03 as along with 6 people and 2 groups heliopais samgj shikin ealloza daforerog valeriehilgers microRNA BenosLab
	Personalizing medicine: a systems biology perspective. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Thomas S. Deisboeck posted to systems_biology personalized_medicine editorial by jfr on 2009-11-02 17:13:21 as along with 2 people phoenixzxl allysonlister
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to mirna_target mirna by jfr on 2009-11-02 17:01:43 as along with 14 people and 5 groups ebcgantman ashkelon13 heliopais megraw fenghezi fpattyn tmmurali ppgardne tonamswish stajich Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA Mycology cube_and_beyond
	MicroRNAs preferentially target the genes with high transcriptional regulation complexity. [My Copy] Biochemical and biophysical research communications, Vol. 352, No. 3. (19 January 2007), pp. 733-738. by Qinghua Cui, Zhenbao Yu, Youlian Pan, Enrico O. Purisima, Edwin Wang posted to mirna_target mirna by jfr on 2009-11-02 15:56:44 as along with 12 people and 6 groups danaiancu epinatel mtagaya daforerog eckart_bindewald tardigrade dchughes cdawson cursonivel1 heliopais maralena natstreet cube_and_beyond microRNA G4ID GIG Genetics-of-Gambling cursonivel1
	Combinatorial microRNAs: working together to make a difference. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 20. (4 October 2008), pp. 3137-3142. by Irena Ivanovska, Michele A. Cleary posted to review mirna by jfr on 2009-11-02 15:51:56 as along with 2 people samgj pengchy
	A computational screen for mouse signaling pathways targeted by microRNA clusters. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 7. (29 July 2008), pp. 1276-1283. by Jianzhen Xu, Chiwai Wong posted to mirna_target mirna_cluster mirna by jfr on 2009-11-02 15:12:20 as along with 7 people and 1 group heliopais coela guhjy bootsy mtagaya maralena daforerog microRNA
	Analysis of Gene Sets Based on the Underlying Regulatory Network [My Copy] Journal of Computational Biology, Vol. 16, No. 3. (March 2009), pp. 407-426. by Ali Shojaie, George Michailidis posted to gene_set_analysis network by jfr on 2009-07-23 16:00:07 as along with 4 people and 1 group zufar shikin guhjy rdiaz Bioinformatics
	Correlation signature of the macroscopic states of the gene regulatory network in cancer. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 11. (17 March 2009), pp. 4079-4084. by Nikolai Slavov, Kenneth A. Dawson posted to cancer gene_expression meta-analysis network prioritization by jfr on 2009-07-22 12:52:06 as along with 5 people and 1 group zufar fpattyn vertikalist rdiaz provero BTS-PT-AS-CS
	MicroRNAs--the micro steering wheel of tumour metastases. [My Copy] Nature reviews. Cancer, Vol. 9, No. 4. (5 April 2009), pp. 293-302. by Milena S. Nicoloso, Riccardo Spizzo, Masayoshi Shimizu, Simona Rossi, George A. Calin posted to metastasis mirna review by jfr on 2009-07-17 15:44:51 as along with 6 people and 1 group guhjy reyez tonamswish giovenko provero valeriehilgers microRNA
	Emerging biomarkers and new understanding of traditional markers in personalized therapy for breast cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 24. (15 December 2008), pp. 8019-8026. by Mitch Dowsett, Anita K. Dunbier posted to biomarker breast_cancer personalized_medicine review by jfr on 2009-07-09 13:58:00 as along with 2 people Zephyrus misonneh
	Triple-Negative Breast Cancer: Risk Factors to Potential Targets [My Copy] Clin Cancer Res, Vol. 14, No. 24. (15 December 2008), pp. 8010-8018. by Bryan P. Schneider, Eric P. Winer, William D. Foulkes, et al.Judy Garber, Charles M. Perou, Andrea Richardson, George W. Sledge, Lisa A. Carey posted to breast_cancer review subtypes target triple_negative by jfr on 2009-07-09 13:56:12 as along with 3 people and 1 group Zephyrus NaliniChilkov misonneh Breast Cancer Reading Club
	Reduced expression of a gene proliferation signature is associated with enhanced malignancy in colon cancer. [My Copy] British journal of cancer, Vol. 99, No. 6. (16 September 2008), pp. 966-973. by A. Anjomshoaa, Y. H. Lin, M. A. Black, et al.J. L. McCall, B. Humar, S. Song, R. Fukuzawa, H. S. Yoon, B. Holzmann, J. Friederichs, A. van Rij, M. Thompson-Fawcett, A. E. Reeve posted to classification colon_cancer proliferation by jfr on 2009-07-01 14:47:34 as
	Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy. [My Copy] Genome research, Vol. 19, No. 2. (February 2009), pp. 276-283. by E. F. Attiyeh, S. J. Diskin, M. A. Attiyeh, et al.Y. P. Mossé, C. Hou, E. M. Jackson, C. Kim, J. Glessner, H. Hakonarson, J. A. Biegel, J. M. Maris posted to copy-number snp-arrays by jfr on 2009-04-28 13:35:14 as along with 3 people and 1 group absterga rdiaz skoch3 Koch_Lab
	The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores [My Copy] Nat Genet, Vol. 41, No. 2. (18 February 2009), pp. 178-186. by Rafael A. Irizarry, Christine Ladd-Acosta, Bo Wen, et al.Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster, Hong Ji, James B. Potash, Sarven Sabunciyan, Andrew P. Feinberg posted to colon_cancer methylation by jfr on 2009-04-15 14:03:54 as along with 5 people saravana suizifish felsani wpuszyk misonneh
	Assessing the quality of hybridized RNA in Affymetrix GeneChips using linear regression. [My Copy] Journal of biomolecular techniques : JBT, Vol. 19, No. 2. (April 2008), pp. 122-128. by Meijuan Li, Cavan Reilly posted to affy quality_control rna_quality by jfr on 2009-04-14 11:29:44 as along with 1 person shikin
	GeneChaser: identifying all biological and clinical conditions in which genes of interest are differentially expressed. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by R. Chen, R. Mallelwar, A. Thosar, S. Venkatasubrahmanyam, A. J. Butte posted to database meta-analysis by jfr on 2009-03-23 14:48:52 as along with 12 people and 2 groups zufar daforerog TRHvidsten ilyashl dswan renatomilani Zephyrus tny guhjy cgaugain barriot GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk
	An empirical framework for binary interactome mapping. [My Copy] Nature methods, Vol. 6, No. 1. (07 January 2009), pp. 83-90. by Kavitha Venkatesan, Jean-François F. Rual, Alexei Vazquez, et al.Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il I. Goh, Muhammed A. Yildirim, Nicolas Simonis, Kathrin Heinzmann, Fana Gebreab, Julie M. Sahalie, Sebiha Cevik, Christophe Simon, Anne-Sophie S. de Smet, Elizabeth Dann, Alex Smolyar, Arunachalam Vinayagam, Haiyuan Yu, David Szeto, Heather Borick, Amélie Dricot, Niels Klitgord, Ryan R. Murray, Chenwei Lin, Maciej Lalowski, Jan Timm, Kirstin Rau, Charles Boone, Pascal Braun, Michael E. Cusick, Frederick P. Roth, David E. Hill, Jan Tavernier, Erich E. Wanker, Albert-László L. Barabási, Marc Vidal posted to network protein_interaction by jfr on 2009-03-18 15:30:17 as along with 4 people chica lawraga lp2 guhjy
	Sparse combinatorial inference with an application in cancer biology [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 265-271. by Sach Mukherjee, Steven Pelech, Richard M. Neve, et al.Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed posted to no-tag by jfr on 2009-03-18 14:22:02 as along with 3 people ipark-kaist mstumpf imina
	Microarray-based gene set analysis: a comparison of current methods [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 502. by Sarah Song, Michael Black posted to comparison gene_set_analysis by jfr on 2009-03-13 14:36:53 as along with 24 people and 1 group dipenps holecm lwaldron ptrobajo ekotelnikova zufar buyske guhjy heliopais fhalbrit lptolik balicea daforerog Zephyrus irinamohorianu dswan shikin nuin hersh006 behindtherabbit colinDotAIBN druvus barriot GeeSharpMinor Roswell Cancer Crosstalk
	Inferring Pathway Activity toward Precise Disease Classification [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217. by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee posted to classification methodology pathway_analysis by jfr on 2009-03-13 11:29:35 as along with 13 people rschulz isimpson yaredo frohike ipark-kaist aviad_work ajbattle zufar carlk renatomilani dragonrez tmmurali ptrobajo
	A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 52. (30 December 2008), pp. 20870-20875. by Kasper Lage, Niclas T. Hansen, Olof E. Karlberg, et al.Aron C. Eklund, Francisco S. Roque, Patricia K. Donahoe, Zoltan Szallasi, Thomas S. Jensen, Søren Brunak posted to disease_genes tissue_specificity by jfr on 2009-03-02 14:19:04 as along with 4 people grahamc bertelsen brianb nedwards
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast_cancer copy-number gene_expression integration mutation by jfr on 2009-02-25 17:59:21 as along with 4 people and 2 groups shikin ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 24. (15 December 2008), pp. 8061-8069. by R. N. Jorissen, L. Lipton, P. Gibbs, et al.M. Chapman, J. Desai, I. T. Jones, T. J. Yeatman, P. East, I. P. Tomlinson, H. W. Verspaget, L. A. Aaltonen, M. Kruhøffer, T. F. Orntoft, C. L. Andersen, O. M. Sieber posted to cin colon_cancer copy-number gene_expression msi by jfr on 2009-02-25 17:58:09 as along with 1 person Terkko
	Molecular classification and correlates in colorectal cancer. [My Copy] The Journal of molecular diagnostics : JMD, Vol. 10, No. 1. (January 2008), pp. 13-27. by S. Ogino, A. Goel posted to cin classification colon_cancer mutation review by jfr on 2009-02-25 17:55:02 as
	A comprehensive analysis of prognostic signatures reveals the high predictive capacity of Proliferation, Immune response and RNA splicing modules in breast cancer. [My Copy] Breast Cancer Research, Vol. 10 (13 November 2008), R93. by Fabien Reyal, Martin H. Van Vliet, Nicola J. Armstrong, et al.Hugo M. Horlings, Karin E. de Visser, Marlen Kok, Andrew E. Teschendorff, Stella Mook, Laura V. Veer, Carlos Caldas, Remy J. Salmon, Marc J. Van de Vijver, Lodewyk F. A. Wessels posted to breast_cancer meta-analysis prognosis proliferation by jfr on 2009-02-25 14:55:32 as along with 2 people and 1 group frohike Zephyrus Breast Cancer Reading Club
	An investigation on performance of Significance Analysis of Microarray (SAM) for the comparisons of several treatments with one control in the presence of small-variance genes. [My Copy] Biometrical journal. Biometrische Zeitschrift, Vol. 50, No. 5. (October 2008), pp. 801-823. by D. Lin, Z. Shkedy, T. Burzykowski, et al.R. Ion, H. W. Göhlmann, A. D. Bondt, T. Perer, T. Geerts, I. Van den Wyngaert, L. Bijnens posted to comparison feature_selection multiple_testing by jfr on 2009-02-25 14:52:18 as along with 1 person guhjy
	Analysis of regulatory network topology reveals functionally distinct classes of microRNAs [My Copy] Nucl. Acids Res. (15 October 2008), gkn712. by Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, Jiang Qian posted to loops mirna network systems_biology by jfr on 2009-02-23 10:59:49 as along with 8 people and 2 groups emptyhb ealloza mtagaya heliopais giovenko samgj pengchy snow_dragon BenosLab microRNA
	Somatic mutations affect key pathways in lung adenocarcinoma [My Copy] Nature, Vol. 455, No. 7216. (23 October 2008), pp. 1069-1075. by Li Ding, Gad Getz, David A. Wheeler, et al.Elaine R. Mardis, Michael D. Mclellan, Kristian Cibulskis, Carrie Sougnez, Heidi Greulich, Donna M. Muzny, Margaret B. Morgan, Lucinda Fulton, Robert S. Fulton, Qunyuan Zhang, Michael C. Wendl, Michael S. Lawrence, David E. Larson, Ken Chen, David J. Dooling, Aniko Sabo, Alicia C. Hawes, Hua Shen, Shalini N. Jhangiani, Lora R. Lewis, Otis Hall, Yiming Zhu, Tittu Mathew, Yanru Ren, Jiqiang Yao, Steven E. Scherer, Kerstin Clerc, Ginger A. Metcalf, Brian Ng, Aleksandar Milosavljevic, Manuel L. Gonzalez-Garay, John R. Osborne, Rick Meyer, Xiaoqi Shi, Yuzhu Tang, Daniel C. Koboldt, Ling Lin, Rachel Abbott, Tracie L. Miner, Craig Pohl, Ginger Fewell, Carrie Haipek, Heather Schmidt, Brian H. Dunford-Shore, Aldi Kraja, Seth D. Crosby, Christopher S. Sawyer, Tammi Vickery, Sacha Sander, Jody Robinson, Wendy Winckler, Jennifer Baldwin, Lucian R. Chirieac, Amit Dutt, Tim Fennell, Megan Hanna, Bruce E. Johnson, Robert C. Onofrio, Roman K. Thomas, Giovanni Tonon, Barbara A. Weir, Xiaojun Zhao, Liuda Ziaugra, Michael C. Zody, Thomas Giordano, Mark B. Orringer, Jack A. Roth, Margaret R. Spitz, Ignacio I. Wistuba, Bradley Ozenberger, Peter J. Good, Andrew C. Chang, David G. Beer, Mark A. Watson, Marc Ladanyi, Stephen Broderick, Akihiko Yoshizawa, William D. Travis, William Pao, Michael A. Province, George M. Weinstock, Harold E. Varmus, Stacey B. Gabriel, Eric S. Lander, Richard A. Gibbs, Matthew Meyerson, Richard K. Wilson posted to lung_cancer mutation pathway by jfr on 2009-02-20 15:40:20 as along with 3 people burak jbhiatt renatomilani
	Reconstructing tumor-wise protein expression in tissue microarray studies using a Bayesian cell mixture model. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 24. (15 December 2008), pp. 2880-2886. by R. Shen, J. M. Taylor, D. Ghosh posted to software tma by jfr on 2009-02-18 14:11:59 as
	GSEA-SNP: Applying Gene Set Enrichment Analysis to SNP data from genome-wide association studies [My Copy] Bioinformatics (14 October 2008), btn516. by Marit Holden, Shiwei Deng, Leszek Wojnowski, Bettina Kulle posted to gene_set_analysis snp-arrays software by jfr on 2009-02-18 14:10:36 as along with 9 people and 1 group kimorley TRHvidsten Zephyrus wimufi guhjy akmanning AbnerCYH sg45653 paszkows Roswell Cancer Crosstalk
	The conflict between complex systems and reductionism. [My Copy] JAMA : the journal of the American Medical Association, Vol. 300, No. 13. (1 October 2008), pp. 1580-1581. by H. H. Heng posted to comment by jfr on 2009-02-18 13:53:26 as along with 1 person guhjy
	Statistical issues in translational cancer research. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5954-5958. by S. L. George posted to review statistics translational by jfr on 2009-02-17 16:48:11 as along with 1 person guhjy
	Models from experiments: combinatorial drug perturbations of cancer cells [My Copy] Mol Syst Biol, Vol. 4 (2 September 2008) by Sven Nelander, Weiqing Wang, Bjorn Nilsson, et al.Qing-Bai She, Christine Pratilas, Neal Rosen, Peter Gennemark, Chris Sander posted to cell_line perturbation small_molecule systems_biology therapy by jfr on 2008-12-05 14:49:00 as along with 6 people tjchen mingzhi aheilbut ptrobajo oelemento balabu
	EGFR antagonists in cancer treatment. [My Copy] N Engl J Med, Vol. 358, No. 11. (13 March 2008), pp. 1160-1174. by F. Ciardiello, G. Tortora posted to egfr review therapy by jfr on 2008-11-28 14:30:00 as along with 3 people dragonrez guhjy dfp7582
	Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays [My Copy] Genome Biology, Vol. 9 (16 September 2008), R136. by Johan Staaf, David Lindgren, Johan Vallon-Christersson, et al.Anders Isaksson, Hanna Goransson, Gunnar Juliusson, Richard Rosenquist, Mattias Hoglund, Ake Borg, Markus Ringner posted to loh segmentation snp-arrays by jfr on 2008-11-26 11:52:33 as along with 1 person rdiaz
	GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR. [My Copy] Physiological genomics, Vol. 30, No. 3. (20 August 2007), pp. 363-370. by M. Kidd, B. Nadler, S. Mane, et al.G. Eick, M. Malfertheiner, M. Champaneria, R. Pfragner, I. Modlin posted to control_genes normalization rt-pcr by jfr on 2008-11-26 10:28:16 as along with 1 person lwaldron
	The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition [My Copy] Genome Biology, Vol. 9, No. 8. (14 August 2008), R127. by Nicole Cloonan, Mellissa Brown, Anita Steptoe, et al.Shivangi Wani, Wei Chan, Alistair Forrest, Gabriel Kolle, Brian Gabrielli, Sean Grimmond posted to mir17-92 mirna mirna_target by jfr on 2008-11-24 16:05:50 as along with 1 person and 1 group tonamswish microRNA
	Robust and efficient identification of biomarkers by classifying features on graphs [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2023-2029. by Taehyun Hwang, Hugues Sicotte, Ze Tian, et al.Baolin Wu, Jean-Pierre Kocher, Dennis A. Wigle, Vipin Kumar, Rui Kuang posted to classification graphs integration network by jfr on 2008-11-10 16:51:57 as along with 10 people mdharsee frohike VGreiff guhjy ihpark nuin GeeSharpMinor mitko AbnerCYH sg45653
	Regulatory networks define phenotypic classes of human stem cell lines [My Copy] Nature (24 August 2008) by Franz-Josef Müller, Louise C. Laurent, Dennis Kostka, et al.Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S. Rao, Ron Shamir, Philip H. Schwartz, Nils O. Schmidt, Jeanne F. Loring posted to network stem by jfr on 2008-11-06 09:47:50 as along with 10 people and 1 group isimpson guhjy zwang ajaymalik ptrobajo heliopais wsjames roys tmmurali caseybrown Oxford Virology

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breast_cancer	455
review	327
mirna	322
classification	261
software	254
colon_cancer	224
methodology	168
gene_expression	157
copy-number	150
network	145
microarray_technology	131
integration	130
bioinformatics	121
clustering	116
feature_selection	104
meta-analysis	89
affy	82
database	79
therapy	78
mirna_target	71
crc_bib	69
array-cgh	68
gene_set_analysis	65
low_level	64
regulation	63
systems_biology	61
pathway_analysis	59
genomics	58
snp-arrays	56
annotation	53
subtypes	53
rt-pcr	52
comment	49
quality_control	47
mutations	43
normalization	41
prognosis	41
estrogen	40
metastasis	40
ffpe	38
cancer	37
microarray_analysis	36
alternative_splicing	35
progression	35
protein_interaction	35
statistics	35
markers	34
deep_sequencing	33
fdr	33
proteomics	33
bioconductor	32
methylation	32
snp	31
class_discovery	28
tamoxifen	28
mutation	27
exon_arrays	25
r	25
standards	25
jfrbib	24
microarray_protocol	23
experiment_design	22
mir17-92	22
two-color	22
brca	21
ovarian_cancer	21
co-expression	20
comparison	20
model	20
pathway	20
tfbs	20
survival_analysis	19
functional_analysis	18
p53	18
treatment	18
kras	17
platform_comparison	17
evaluation	16
illumina	16
jfrbib04-09	16
stem_cell	16
antisense	15
biomarker	15
chip-chip	15
module_detection	15
multiple_testing	15
nmf	15
erbb	14
sequencing	14
text-mining	14
basal_subtype	13
bio_signature	13
reproducible_research	13
stageii	13
staging	13
technology	13
tma	13
cnv	12
genotyping	12
lung_cancer	12
marker	12
drug_discovery	11
egfr	11
gene_ontology	11
maqc	11
missing_values	11
protocol	11
rna_quality	11
cell_line	10
gene_lists	10
genome_browser	10
loh	10
tissue_specificity	10
disease_genes	9
msi	9
probe_design	9
pten	9
segmentation	9
semantic_web	9
boutique_arrays	8
can_genes	8
control_genes	8
e2f1	8
mirna_regulation	8
personalized_medicine	8
proliferation	8
sample_size	8
tgfb	8
visualization	8
18q_loh	7
consensus_clustering	7
immunohistochemistry	7
inter-laboratory	7
lymphoma	7
myc	7
tiling_array	7
chip-seq	6
community	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
non-coding	6
plos_rules	6
promoters	6
serum	6
stem	6
time-course	6
validation	6
correlation	5
gene_pairs	5
grid_computing	5
gwas	5
machine_learning	5
mir21	5
nci60	5
ontology	5
plos_primer	5
biobank	4
cin	4
cross-platform	4
data_curation	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
plos_start	4
pooling	4
prioritization	4
prostate_cancer	4
radiation	4
resource	4
trial	4
agilent	3
apc	3
bim	3
chemotherapy	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
hapmap	3
interaction	3
loops	3
mass_spec	3
micro_environment	3
mir192	3
open-source	3
outlier	3
pca	3
pik3ca	3
primer	3
public_data	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
survival	3
triple_negative	3
tutorial	3
web_services	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
biomarkers	2
caching	2
cdk8	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
gene_fusion	2
glioblastoma	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
lymphocytes	2
mage	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
ontologies	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
3utr	1
aging	1
akt	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cell_cycle	1
cervical_cancer	1
circulating_tumor_cells	1
clusterin	1
compression	1
cross-study	1
dasl	1
dcc	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
er	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fgfr2	1
flow_cytometry	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
genetics	1
genoty	1
her2	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
luminal_subtype	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
modules	1
myb	1
neural_networks	1
news	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
permutations	1
perturbation	1
pilot_study	1
power_analysis	1
prb	1
pre-post	1
randomization	1
rb	1
read_mapping	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
translocation	1
ucs	1
web_server	1
wiki	1

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