jfr's alternative_splicing [35 articles] Export

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	MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 8. (1 August 2008), pp. 1470-1479. by Yi Xing, Peter Stoilov, Karen Kapur, et al.Areum Han, Hui Jiang, Shihao Shen, Douglas L. Black, Wing Hung H. Wong posted to exon_arrays alternative_splicing by jfr on 2009-11-02 15:15:36 as
	Identifying differential exon splicing using linear models and correlation coefficients [My Copy] BMC Bioinformatics, Vol. 10 (20 January 2009), 26. by Sonia H. Shah, Jacqueline A. Pallas posted to alternative_splicing exon_arrays by jfr on 2009-04-14 11:37:37 as along with 2 people guhjy taguchi
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to alternative_splicing deep_sequencing by jfr on 2009-03-12 10:48:29 as along with 21 people ongenetics hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer. [My Copy] Nucleic acids research (16 October 2008) by Liqiang Xi, Andrew Feber, Vanita Gupta, et al.Maoxin Wu, Andrew D D. Bergemann, Rodney J J. Landreneau, Virginia R R. Litle, Arjun Pennathur, James D D. Luketich, Tony E E. Godfrey posted to alternative_splicing exon_arrays lung_cancer by jfr on 2009-02-23 10:54:51 as along with 1 person cthachuk
	easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data. [My Copy] BMC bioinformatics, Vol. 9 (14 October 2008), 432. by T. Y. Chang, Y. Y. Li, C. H. Jen, et al.T. P. Yang, C. H. Lin, M. T. Hsu, H. W. Wang posted to alternative_splicing exon_arrays software by jfr on 2009-02-18 15:36:34 as along with 2 people guhjy dswan
	Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays [My Copy] BMC Genomics, Vol. 9 (07 November 2008), 529. by Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski posted to alternative_splicing exon_arrays by jfr on 2009-02-17 15:24:24 as along with 6 people bertelsen guhjy ivanek pengchy dswan caseybrown
	SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by M. C. Ryan, B. R. Zeeberg, N. J. Caplen, et al.J. A. Cleland, A. B. Kahn, H. Liu, J. N. Weinstein posted to alternative_splicing by jfr on 2008-12-05 14:41:19 as along with 3 people druvus guhjy GeeSharpMinor
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative_splicing deep_sequencing by jfr on 2008-10-15 14:51:01 as along with 28 people and 2 groups hzoltan zufar eszczurek n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Tissue-specific splicing factor gene expression signatures [My Copy] Nucl. Acids Res. (24 July 2008), gkn463. by Ana R. Grosso, Anita Q. Gomes, Nuno L. Barbosa-Morais, et al.Sandra Caldeira, Natalie P. Thorne, Godfrey Grech, Marieke von Lindern, Maria Carmo-Fonseca posted to alternative_splicing by jfr on 2008-09-30 13:11:43 as along with 4 people burak inesdesantiago cajunsushi aconesa
	FIRMA: a method for detection of alternative splicing from exon array data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 15. (1 August 2008), pp. 1707-1714. by E. Purdom, K. M. Simpson, M. D. Robinson, J. G. Conboy, A. V. Lapuk, T. P. Speed posted to alternative_splicing exon_arrays software by jfr on 2008-08-05 14:32:07 as along with 4 people ongenetics darshan poschm guhjy
	Alternative splicing in colon, bladder, and prostate cancer identified by exon-array analysis [My Copy] Mol Cell Proteomics (18 March 2008), M700590-MCP200. by Kasper Thorsen, Karina D. Sorensen, Anne S. Brems-Eskildsen, et al.Charlotte Modin, Mette Gaustadnes, Anne-Mette K. Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R. Krainer, Niels Torring, Lars Dyrskjot, Claus L. Andersen, Torben F. Orntoft posted to alternative_splicing colon_cancer exon_arrays by jfr on 2008-08-04 18:07:44 as along with 2 people jo_davies waszak
	Entropy measures quantify global splicing disorders in cancer. [My Copy] PLoS computational biology, Vol. 4, No. 3. (March 2008) by W. Ritchie, S. Granjeaud, D. Puthier, D. Gautheret posted to alternative_splicing by jfr on 2008-05-16 10:24:21 as
	SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays [My Copy] Genome Biology, Vol. 9 (29 February 2008), R46. by Miguel A. Anton, Dorleta Gorostiaga, Elizabeth Guruceaga, et al.Victor Segura, Pedro Carmona-Saez, Alberto Pascual-Montano, Ruben Pio, Luis M. Montuenga, Angel Rubio posted to alternative_splicing exon_arrays methodology by jfr on 2008-05-04 22:09:12 as along with 5 people and 1 group stajich huali Baten AlexanderPico guhjy Mycology
	Extent and diversity of human alternative splicing established by complementary database annotation and microarray analysis. [My Copy] Omics : a journal of integrative biology, Vol. 12, No. 1. (March 2008), pp. 83-92. by J. L. Bingham, P. E. Carrigan, L. J. Miller, S. Srinivasan posted to alternative_splicing by jfr on 2008-04-17 17:18:43 as
	A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences [My Copy] BMC Genomics, Vol. 8 (20 August 2007), 284. by Joseph C. Lee, David Stiles, Jun Lu, Margaret C. Cam posted to affy alternative_splicing annotation by jfr on 2008-02-19 16:28:14 as along with 2 people daforerog heliopais
	Identification of Common Genetic Variation That Modulates Alternative Splicing. [My Copy] PLoS Genet, Vol. 3, No. 6. (15 June 2007) by Jeremy Hull, Susana Campino, Kate Rowlands, et al.Man-Suen S. Chan, Richard R R. Copley, Martin S S. Taylor, Kirk Rockett, Gareth Elvidge, Brendan Keating, Julian Knight, Dominic Kwiatkowski posted to alternative_splicing by jfr on 2008-02-13 09:37:28 as along with 3 people qfwills mdimon guhjy
	Discovery of tissue-specific exons using comprehensive human exon microarrays [My Copy] Genome Biology, Vol. 8 (24 April 2007), R64. by Tyson A. Clark, Anthony C. Schweitzer, Tina X. Chen, et al.Michelle K. Staples, Gang Lu, Hui Wang, Alan Williams, John E. Blume posted to alternative_splicing exon_arrays by jfr on 2008-02-06 13:05:59 as along with 3 people jo_davies guhjy ajgentles
	Alternative splicing in cancer: noise, functional, or systematic? [My Copy] Int J Biochem Cell Biol, Vol. 39, No. 7-8. (2007), pp. 1432-1449. by R. I. Skotheim, M. Nees posted to alternative_splicing review by jfr on 2007-12-17 12:14:15 as
	A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing. [My Copy] Nucleic Acids Res (10 July 2007) by Debopriya Das, Tyson A A. Clark, Anthony Schweitzer, et al.Miki Yamamoto, Henry Marr, Josh Arribere, Simon Minovitsky, Alexander Poliakov, Inna Dubchak, John E E. Blume, John G G. Conboy posted to alternative_splicing exon_arrays by jfr on 2007-12-06 11:46:18 as along with 1 person sebastien_vigneau
	A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants [My Copy] BMC Bioinformatics, Vol. 8 (04 June 2007), 180. by Pierre, Martin Dutertre, Margot Correa, Didier Auboeuf posted to alternative_splicing database by jfr on 2007-11-28 11:49:27 as along with 1 person guhjy
	BIPASS: BioInformatics Pipeline Alternative Splicing Services. [My Copy] Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007) by Z. Lacroix, C. Legendre, L. Raschid, B. Snyder posted to alternative_splicing bioinformatics by jfr on 2007-08-02 14:08:48 as along with 1 person guhjy
	Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 1 (2007) by D. Rambaldi, B. Felice, V. Praz, P. Bucher, D. Cittaro, A. Guffanti posted to alternative_splicing by jfr on 2007-07-10 11:35:16 as
	SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis [My Copy] BMC Bioinformatics, Vol. 8 (05 March 2007), 75. by Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry R. Zeeberg, Curtis D. Jamison, John N. Weinstein posted to alternative_splicing by jfr on 2007-07-10 11:33:35 as along with 2 people and 1 group malcook ghattem SIMR bioinformatics
	Microarray analysis of alternative splicing. [My Copy] OMICS, Vol. 10, No. 3. (2006), pp. 344-357. by M. Cuperlovic-Culf, N. Belacel, A. S. Culf, R. J. Ouellette posted to alternative_splicing microarray_technology review by jfr on 2007-06-12 18:54:49 as along with 1 person nicholso
	Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays. [My Copy] Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 1990-1999. by C. Li, M. Kato, L. Shiue, J. E. Shively, M. Ares, R. J. Lin posted to alternative_splicing breast_cancer by jfr on 2007-06-08 16:11:05 as along with 1 person tabu
	Unusual intron conservation near tissue-regulated exons found by splicing microarrays. [My Copy] PLoS Comput Biol, Vol. 2, No. 1. (January 2006) by C. W. Sugnet, K. Srinivasan, T. A. Clark, et al.G. O'Brien, M. S. Cline, H. Wang, A. Williams, D. Kulp, J. E. Blume, D. Haussler, M. Ares posted to alternative_splicing genomics by jfr on 2007-06-08 09:39:33 as
	Analysis of alternative splicing with microarrays: successes and challenges. [My Copy] Genome Biol, Vol. 5, No. 7. (2004) by C. Lee, M. Roy posted to alternative_splicing review by jfr on 2007-05-10 17:14:13 as along with 2 people mirzazadeh mdimon
	Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array [My Copy] BMC Genomics, Vol. 7 (27 December 2006), 325. by Paul J. Gardina, Tyson A. Clark, Brian Shimada, et al.Michelle K. Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz posted to exon_arrays colon_cancer alternative_splicing by jfr on 2007-01-16 18:09:53 as along with 2 people waszak srp33
	Variation in alternative splicing across human tissues. [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by G. Yeo, D. Holste, G. Kreiman, C. B. Burge posted to genomics alternative_splicing by jfr on 2007-01-12 10:07:49 as
	A statistical method for predicting splice variants between two groups of samples using GeneChip® expression array data [My Copy] Theoretical Biology and Medical Modelling, Vol. 3 (07 April 2006), 19. by Wenhong Fan, Najma Khalid, Andrew R. Hallahan, James M. Olson, Lue P. Zhao posted to alternative_splicing by jfr on 2007-01-11 13:33:16 as along with 1 person poschm
	Two-Dimensional Transcriptome Profiling: Identification of Messenger RNA Isoform Signatures in Prostate Cancer from Archived Paraffin-Embedded Cancer Specimens [My Copy] Cancer Res, Vol. 66, No. 8. (15 April 2006), pp. 4079-4088. by Hai-Ri Li, Jessica Wang-Rodriguez, Murlidharan T. Nair, et al.Joanne M. Yeakley, Young-Soo Kwon, Marina Bibikova, Christina Zheng, Lixin Zhou, Kui Zhang, Tracy Downs, Xiang-Dong Fu, Jian-Bing Fan posted to ffpe alternative_splicing by jfr on 2007-01-11 09:44:29 as along with 3 people wutongbin vplagnol cberry
	Diversification of stem cell molecular repertoire by alternative splicing. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 40. (4 October 2005), pp. 14290-14295. by M. Pritsker, T. T. Doniger, L. C. Kramer, S. E. Westcot, I. R. Lemischka posted to alternative_splicing stem_cell by jfr on 2007-01-08 12:02:31 as
	Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs. [My Copy] Nucleic Acids Res (12 August 2006) by Jun-Ichi I. Takeda, Yutaka Suzuki, Mitsuteru Nakao, et al.Roberto A A. Barrero, Kanako O O. Koyanagi, Lihua Jin, Chie Motono, Hiroko Hata, Takao Isogai, Keiichi Nagai, Tetsuji Otsuki, Vladimir Kuryshev, Masafumi Shionyu, Kei Yura, Mitiko Go, Jean Thierry-Mieg, Danielle Thierry-Mieg, Stefan Wiemann, Nobuo Nomura, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi posted to alternative_splicing genomics by jfr on 2006-11-08 11:59:52 as along with 2 people Cortel eoghanharr
	Alternative splicing: new insights from global analyses. [My Copy] Cell, Vol. 126, No. 1. (14 July 2006), pp. 37-47. by B. J. Blencowe posted to alternative_splicing genomics by jfr on 2006-11-06 16:06:51 as along with 6 people and 3 groups woodson8 dchughes saru jwestbrook mdimon cchand G4ID King_Lab Genetics-of-Gambling
	A microarray configuration to quantify expression levels and relative abundance of splice variants. [My Copy] Nucleic Acids Res, Vol. 33, No. 5. (2005) by P. Fehlbaum, C. Guihal, L. Bracco, O. Cochet posted to alternative_splicing microarray_protocol by jfr on 2005-08-14 17:28:35 as

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breast_cancer	477
mirna	348
review	345
software	275
classification	272
colon_cancer	234
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methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
bioinformatics	122
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affy	86
database	82
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crc_bib	69
regulation	67
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genomics	60
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mutations	43
deep_sequencing	42
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prognosis	41
microarray_analysis	40
estrogen	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
protein_interaction	35
alternative_splicing	35
progression	35
markers	35
fdr	34
snp	33
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r	31
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mage	3
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il8	1
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asco	1
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rb	1
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pattern_discovery	1
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eno1	1
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