jfr's annotation [53 articles] Export

Recent papers added to jfr's library classified by the tag annotation. You can also see everyone's annotation.

	BioMart--biological queries made easy. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 22. by Damian Smedley, Syed Haider, Benoit Ballester, et al.Richard Holland, Darin London, Gudmundur Thorisson, Arek Kasprzyk posted to annotation database software by jfr on 2009-07-09 13:16:44 as along with 28 people and 4 groups artaban421 sjcockell lmichan jdbowes fgibson pekrau gangcai daforerog fisherp allysonlister Stew grahamc dswan Zephyrus renatomilani guhjy natstreet pablocarb Cortel dbk mitko brianb ajaymalik neils kshameer dullhunk druvus cisevol Bioinformatics - CRUK Bioinformatics Roswell Cancer Crosstalk BergmanLab
	The Genome Reverse Compiler: an explorative annotation tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 35. by Andrew Warren, Joao Setubal posted to annotation bioinformatics genome_browser genomics software by jfr on 2009-07-03 16:52:46 as along with 8 people and 2 groups guhjy nuin natstreet Zephyrus idoerg cisevol druvus behindtherabbit Roswell Cancer Crosstalk BergmanLab
	ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. [My Copy] BMC bioinformatics, Vol. 10 (23 January 2009), 30. by B. H. van den Berg, J. H. Konieczka, F. M. McCarthy, S. C. Burgess posted to annotation functional_analysis microarray_technology software by jfr on 2009-04-07 14:13:26 as along with 3 people guhjy natstreet druvus
	CleanEx: new data extraction and merging tools based on MeSH term annotation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D880-884. by Viviane Praz, Philipp Bucher posted to annotation database microarray_analysis by jfr on 2009-03-24 12:42:42 as along with 4 people lmichan lptolik nuin guhjy
	Annotation of Mammalian Primary microRNAs [My Copy] BMC Genomics, Vol. 9 (27 November 2008), 564. by Harpreet, Sam Griffiths-Jones posted to annotation mirna by jfr on 2009-03-16 10:06:08 as along with 8 people and 1 group jsatkosk heliopais daforerog druvus pengchy ealloza balicea sjung microRNA
	AmiGO: online access to ontology and annotation data. [My Copy] Bioinformatics (Oxford, England) (25 November 2008) by Seth Carbon, Amelia Ireland, Christopher J J. Mungall, et al.Shengqiang Shu, Brad Marshall, Suzanna Lewis, , posted to annotation ontology software by jfr on 2009-03-13 13:40:11 as along with 13 people and 2 groups fgibson ilyashl sobolevnrm jm12 allysonlister mitko dswan ykadi natstreet ientb druvus guhjy dullhunk baker-group Bioinformatics
	DAVID gene ID conversion tool. [My Copy] Bioinformation, Vol. 2, No. 10. (2008), pp. 428-430. by Da Wei a. . W. Huang, Brad T. Sherman, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to annotation database by jfr on 2009-02-18 13:50:26 as along with 3 people bertelsen daforerog guhjy
	GenMiner: Mining non-redundant association rules from integrated gene expression data and annotations. [My Copy] Bioinformatics (Oxford, England) (17 September 2008) by Ricardo Martinez, Nicolas Pasquier, Claude Pasquier posted to annotation gene_expression integration by jfr on 2009-01-09 13:30:24 as along with 5 people Zephyrus sg45653 guhjy barriot druvus
	Annotation-Modules: A tool for finding significant combinations of multisource annotations for gene lists. [My Copy] Bioinformatics (Oxford, England) (8 May 2008) by Michael Hackenberg, Rune Matthiesen posted to annotation database ontology software by jfr on 2009-01-07 12:07:07 as along with 4 people and 1 group bertelsen guhjy barriot sobolevnrm baker-group
	NCI Thesaurus: a semantic model integrating cancer-related clinical and molecular information. [My Copy] Journal of biomedical informatics, Vol. 40, No. 1. (February 2007), pp. 30-43. by N. Sioutos, S. de Coronado, M. W. Haber, F. W. Hartel, W. L. Shaiu, L. W. Wright posted to annotation cancer ontologies by jfr on 2008-11-28 14:11:07 as along with 4 people and 1 group Scis0000002 guhjy Zephyrus frohike Roswell Cancer Crosstalk
	Extending pathways based on gene lists using InterPro domain signatures [My Copy] BMC Bioinformatics, Vol. 9 (04 January 2008), 3. by Florian Hahne, Alexander Mehrle, Dorit Arlt, Annemarie Poustka, Stefan Wiemann, Tim Beissbarth posted to annotation bioconductor gene_set_analysis pathway_analysis by jfr on 2008-11-28 14:01:46 as along with 5 people and 1 group ealloza frohike renatomilani guhjy AlexanderPico Bioinformatics
	Integrating biological data - the Distributed Annotation System [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 8. (22 July 2008), S3. by Andrew Jenkinson, Mario Albrecht, Ewan Birney, et al.Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic posted to annotation integration software by jfr on 2008-10-08 15:11:26 as along with 8 people PabloMarin timhubbard joergkurtwegner niallhaslam druvus guhjy aconesa djkt
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to annotation gene_ontology by jfr on 2008-09-24 14:08:40 as along with 36 people and 3 groups druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	The "street light syndrome", or how protein taxonomy can bias experimental manipulations. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 4. (April 2008), pp. 349-357. by G. Markov, G. Lecointre, B. Demeneix, V. Laudet posted to annotation genomics by jfr on 2008-09-15 10:24:33 as
	Calling on a million minds for community annotation in WikiProteins [My Copy] Genome Biology, Vol. 9, No. 5. (2008), R89. by Barend Mons, Michael Ashburner, Christine Chichester, et al.Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J. van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch posted to annotation proteomics software by jfr on 2008-09-05 13:35:59 as along with 23 people and 1 group daforerog abhishek_tiwari rolawren PaoloRomano thegoose2 fuwiki mchelen yas AlexanderPico thomaskelder dullhunk tharris renatomilani neils fpattyn sjc Katje jamselem ChrisEvelo carlk guhjy xingxu rholz microbiology_nijmegen
	Lightweight Genome Viewer: portable software for browsing genomics data in its chromosomal context [My Copy] BMC Bioinformatics, Vol. 8 (18 September 2007), 344. by Jeremiah J. Faith, Andrew J. Olson, Timothy S. Gardner, Ravi Sachidanandam posted to annotation bioinformatics genome_browser software by jfr on 2008-05-16 10:09:05 as along with 1 person guhjy
	Human Proteinpedia enables sharing of human protein data [My Copy] Nature Biotechnology, Vol. 26, No. 2., pp. 164-167. by Suresh Mathivanan, Mukhtar Ahmed, Natalie G. Ahn, et al.Hainard Alexandre, Ramars Amanchy, Philip C. Andrews, Joel S. Bader, Brian M. Balgley, Marcus Bantscheff, Keiryn L. Bennett, Erik Björling, Blagoy Blagoev, Ron Bose, Samir K. Brahmachari, Alma S. Burlingame, Xosé R. Bustelo, Gerard Cagney, Greg T. Cantin, Helene L. Cardasis, Julio E. Celis, Raghothama Chaerkady, Feixia Chu, Philip A. Cole, Catherine E. Costello, Robert J. Cotter, David Crockett, James P. Delany, Angelo M. De Marzo, Leroi V. Desouza, Eric W. Deutsch, Eric Dransfield, Gerard Drewes, Arnaud Droit, Michael J. Dunn, Kojo Elenitoba-Johnson, Rob M. Ewing, Jennifer Van Eyk, Vitor Faca, Jayson Falkner, Xiangming Fang, Catherine Fenselau, Daniel Figeys, Pierre Gagné, Cecilia Gelfi, Kris Gevaert, Jeffrey M. Gimble, Florian Gnad, Renu Goel, Pavel Gromov, Samir M. Hanash, William S. Hancock, H. C. Harsha, Gerald Hart, Faith Hays, Fuchu He, Prashantha Hebbar, Kenny Helsens, Heiko Hermeking, Winston Hide, Karin Hjernø, Denis F. Hochstrasser, Oliver Hofmann, David M. Horn, Ralph H. Hruban, Nieves Ibarrola, Peter James, Ole N. Jensen, Pia H. Jensen, Peter Jung, Kumaran Kandasamy, Indu Kheterpal, Reiko F. Kikuno, Ulrike Korf, Roman Körner, Bernhard Kuster, Min-Seok Kwon, Hyoung-Joo Lee, Young-Jin Lee, Michael Lefevre, Minna Lehvaslaiho, Pierre Lescuyer, Fredrik Levander, Megan S. Lim, Christian Löbke, Joseph A. Loo, Matthias Mann, Lennart Martens, Juan Martinez-Heredia, Mark Mccomb, James Mcredmond, Alexander Mehrle, Rajasree Menon, Christine A. Miller, Harald Mischak, Sujatha S. Mohan, Riaz Mohmood, Henrik Molina, Michael F. Moran, James D. Morgan, Robert Moritz, Martine Morzel, David C. Muddiman, Anuradha Nalli, Daniel J. Navarro, Thomas A. Neubert, Osamu Ohara, Rafael Oliva, Gilbert S. Omenn, Masaaki Oyama, Young-Ki Paik, Kyla Pennington, Rainer Pepperkok, Balamurugan Periaswamy, Emanuel F. Petricoin, Guy G. Poirier, Keshava T. S. Prasad, Samuel O. Purvine, Abdul B. Rahiman, Prasanna Ramachandran, Y. L. Ramachandra, Robert H. Rice, Jens Rick, Ragna H. Ronnholm, Johanna Salonen, Jean-Charles Sanchez, Thierry Sayd, Beerelli Seshi, Kripa Shankari, Shi J. Sheng, Vivekananda Shetty, K. Shivakumar, Richard J. Simpson, Ravi Sirdeshmukh, Michael K. W. Siu, Jeffrey C. Smith, Richard D. Smith, David J. States, Sumio Sugano, Matthew Sullivan, Giulio Superti-Furga, Maarit Takatalo, Visith Thongboonkerd, Jonathan C. Trinidad, Mathias Uhlen, Joël Vandekerckhove, Julian Vasilescu, Timothy D. Veenstra, José-Manuel Vidal-Taboada, Mauno Vihinen, Robin Wait, Xiaoyue Wang, Stefan Wiemann, Billy Wu, Tao Xu, John R. Yates, Jun Zhong, Ming Zhou, Yunping Zhu, Petra Zurbig, Akhilesh Pandey posted to annotation database protein_interaction proteomics resource by jfr on 2008-04-30 16:55:49 as along with 7 people Arnaud brianb guhjy tmmurali dullhunk jdiezperezj drbal
	Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases [My Copy] BMC Bioinformatics, Vol. 8 (04 October 2007), 372. by Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan posted to annotation network software by jfr on 2008-04-09 15:29:32 as along with 6 people and 1 group turnersd fhalbrit balicea daforerog guhjy shikin GeneGo
	Novel definition files for human GeneChips based on GeneAnnot [My Copy] BMC Bioinformatics, Vol. 8 (15 November 2007), 446. by Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, et al.Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian A. Danieli, Silvio Bicciato posted to affy annotation software by jfr on 2008-03-17 15:20:14 as along with 3 people daforerog giovenko ghattem
	A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences [My Copy] BMC Genomics, Vol. 8 (20 August 2007), 284. by Joseph C. Lee, David Stiles, Jun Lu, Margaret C. Cam posted to affy alternative_splicing annotation by jfr on 2008-02-19 16:28:14 as along with 2 people daforerog heliopais
	AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 18. (15 September 2007), pp. 2385-2390. by Hongfang Liu, Barry R. Zeeberg, Gang Qu, et al.A. Gunes Koru, Alessandro Ferrucci, Ari Kahn, Michael C. Ryan, Antej Nuhanovic, Peter J. Munson, William C. Reinhold, David W. Kane, John N. Weinstein posted to affy annotation by jfr on 2008-02-04 11:58:07 as along with 8 people VGreiff giovenko guhjy ghattem ryanraaum heliopais Montrachet bertelsen
	DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis [My Copy] BMC Bioinformatics, Vol. 8 (02 November 2007), 426. by Brad T. Sherman, Da W. Huang, Qina Tan, et al.Yongjian Guo, Stephan Bour, David Liu, Robert Stephens, Michael W. Baseler, Clifford H. Lane, Richard A. Lempicki posted to annotation database functional_analysis by jfr on 2008-02-04 10:52:19 as along with 6 people and 1 group daforerog bertelsen guhjy ealloza barriot hpaces BioinfoCIPF
	Analysis of probe level patterns in Affymetrix microarray data [My Copy] BMC Bioinformatics, Vol. 8 (04 May 2007), 146. by Alexander C. Cambon, Abdelnaby Khalyfa, Nigel G. F. Cooper, Caryn M. Thompson posted to affy annotation low_level by jfr on 2008-01-24 17:16:35 as along with 4 people ghattem niallhaslam bertelsen ptrobajo
	AILUN: reannotating gene expression data automatically. [My Copy] Nature methods, Vol. 4, No. 11. (November 2007), pp. 879-879. by Rong Chen, Li Li, Atul J. Butte posted to annotation database by jfr on 2007-12-18 13:04:22 as along with 4 people frohike tmmurali incovoma guhjy
	The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [My Copy] Genome Biology, Vol. 8, No. 9. (04 September 2007), R183. by Da Huang, Brad Sherman, Qina Tan, et al.Jack Collins, W. Gregory Alvord, Jean Roayaei, Robert Stephens, Michael Baseler, H. Clifford Lane, Richard Lempicki posted to annotation database functional_classification by jfr on 2007-12-07 14:44:02 as along with 9 people VGreiff bertelsen ndiaz guhjy aalibes dragonrez rdiaz mellabee heliopais
	A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array [My Copy] Nucleic Acids Research, Vol. 33, No. 3. (2005), pp. e31-e31. by Jeremy Harbig, Robert Sprinkle, Steven A. Enkemann posted to affy annotation by jfr on 2007-12-03 11:04:09 as along with 3 people incovoma heliopais bertelsen
	Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (11 June 2007), 194. by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li posted to affy annotation by jfr on 2007-11-28 13:13:39 as along with 3 people guhjy heliopais bertelsen
	nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays [My Copy] Biology Direct, Vol. 2 (31 May 2007), 16. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to annotation software by jfr on 2007-11-28 12:04:04 as along with 3 people ptrobajo heliopais guhjy
	GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (22 May 2007), 166. by Holger Frohlich, Nora Speer, Annemarie Poustka, Tim BeiSZbarth posted to annotation go software by jfr on 2007-11-27 13:30:43 as along with 5 people natstreet guhjy macavity1g sgoetz RamuAnandakrishnan
	Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays [My Copy] BMC Bioinformatics, Vol. 8 (29 March 2007), 108. by Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. Cam posted to affy annotation by jfr on 2007-09-12 17:54:41 as along with 5 people and 1 group heliopais guhjy frohike ghattem bertelsen Bioinformatics
	DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists [My Copy] Nucl. Acids Res., Vol. 35, No. Web Server issue. (18 June 2007), gkm415. by Da W. Huang, Brad T. Sherman, Qina Tan, et al.Joseph Kir, David Liu, David Bryant, Yongjian Guo, Robert Stephens, Michael W. Baseler, H. Clifford Lane, Richard A. Lempicki posted to annotation bioinformatics by jfr on 2007-08-02 14:11:35 as along with 3 people VGreiff bertelsen guhjy
	From genes to functional classes in the study of biological systems [My Copy] BMC Bioinformatics, Vol. 8 (03 April 2007), 114. by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, et al.Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo posted to annotation by jfr on 2007-07-23 19:09:59 as along with 7 people and 1 group daforerog Sharpshoot ealloza ajw Garamonfok djkt sgoetz BioinfoCIPF
	Probe selection for high-density oligonucleotide arrays. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 20. (30 September 2003), pp. 11237-11242. by R. Mei, E. Hubbell, S. Bekiranov, et al.M. Mittmann, F. C. Christians, M. M. Shen, G. Lu, J. Fang, W. M. Liu, T. Ryder, P. Kaplan, D. Kulp, T. A. Webster posted to affy annotation probe_design by jfr on 2007-07-20 17:17:06 as
	A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat. [My Copy] BMC bioinformatics, Vol. 8 (20 April 2007), 132. by Rudi Alberts, Peter Terpstra, Menno Hardonk, et al.Leonid V. Bystrykh, Gerald de Haan, Rainer Breitling, Jan-Peter P. Nap, Ritsert C. Jansen posted to affy annotation by jfr on 2007-07-19 14:37:31 as along with 4 people ptrobajo heliopais guhjy ghattem
	FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. [My Copy] Nucleic Acids Res (3 May 2007) by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, et al.Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo posted to annotation functional_analysis by jfr on 2007-07-11 15:51:31 as along with 3 people and 1 group guhjy ealloza heliopais BioinfoCIPF
	GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists. [My Copy] Genome biology, Vol. 8, No. 1. (04 January 2007), R3. by Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M. Carazo, Alberto Pascual-Montano posted to annotation bioinformatics by jfr on 2007-07-10 17:30:09 as along with 4 people and 1 group ptrobajo aalibes ealloza yas BioinfoCIPF
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biology, Vol. 5, No. 10. (2004), R73. by Eric Schadt, Stephen Edwards, Debraj Guhathakurta, et al.Dan Holder, Lisa Ying, Vladimir Svetnik, Amy Leonardson, Kyle Hart, Archie Russell, Guoya Li, Guy Cavet, John Castle, Paul Mcdonagh, Zhengyan Kan, Ronghua Chen, Andrew Kasarskis, Mihai Margarint, Ramon Caceres, Jason Johnson, Christopher Armour, Philip G. Engele, Nicholas Tsinoremas, Daniel Shoemaker posted to annotation genomics by jfr on 2007-07-02 17:07:14 as along with 4 people and 1 group humburg daforerog inesdesantiago kaspermunch Bioinformatics
	Functional interpretation of microarray experiments. [My Copy] Omics : a journal of integrative biology, Vol. 10, No. 3. (2006), pp. 398-410. by Joaquín Dopazo posted to annotation review by jfr on 2007-06-12 18:42:35 as along with 3 people and 1 group jperkins esplinter ealloza BioinfoCIPF
	BayGO: Bayesian analysis of ontology term enrichment in microarray data. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by R. Z. Vêncio, T. Koide, S. L. Gomes, C. A. Pereira posted to annotation bioinformatics by jfr on 2007-06-08 17:09:48 as along with 2 people bertelsen cmzmasek
	Improved precision and accuracy for microarrays using updated probe set definitions [My Copy] BMC Bioinformatics, Vol. 8 (08 February 2007), 48. by Rickard Sandberg, Ola Larsson posted to affy annotation by jfr on 2007-06-08 16:06:37 as along with 7 people shikin lwaldron gpalidwor shigepong ghattem heliopais bertelsen
	Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips [My Copy] BMC Bioinformatics, Vol. 8 (15 January 2007), 13. by Maria A. Stalteri, Andrew P. Harrison posted to affy annotation by jfr on 2007-05-11 14:51:16 as along with 8 people sebastien_vigneau guhjy gpalidwor hpiwowar frohike ghattem bertelsen heliopais
	IDconverter and IDClight: conversion and annotation of gene and protein IDs. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by Andreu Alibés, Patricio Yankilevich, Andrés Cañada, Ramón Díaz-Uriarte posted to annotation software by jfr on 2007-05-10 17:30:45 as along with 10 people daforerog druvus operon dswan guhjy aalibes grahamc cerami srp33 mdstobbe
	CROPPER: A metagene creator resource for cross-platform and cross-species compendium studies [My Copy] BMC Bioinformatics, Vol. 7 (22 September 2006), 418. by Jussi Paananen, Markus Storvik, Garry Wong posted to software annotation by jfr on 2007-01-10 15:42:34 as along with 1 person guhjy
	Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005) by M. Dai, P. Wang, A. D. Boyd, et al.G. Kostov, B. Athey, E. G. Jones, W. E. Bunney, R. M. Myers, T. P. Speed, H. Akil, S. J. Watson, F. Meng posted to annotation affy by jfr on 2007-01-10 10:44:38 as along with 2 people pcahan1 tuck
	The effect of GeneChip gene definitions on the microarray study of cancers. [My Copy] Bioessays, Vol. 28, No. 7. (July 2006), pp. 739-746. by X. Lu, X. Zhang posted to annotation affy by jfr on 2007-01-10 10:37:42 as along with 2 people lwaldron bertelsen
	A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions [My Copy] PLoS Comput Biol, Vol. 2, No. 3. (17 March 2006), e18. by Gustavo Glusman, Shizhen Qin, M. Raafat El-Gewely, et al.Andrew F. Siegel, Jared C. Roach, Leroy Hood, Arian F. A. Smit posted to annotation genomics by jfr on 2006-11-08 11:02:28 as along with 3 people and 2 groups cisevol GustavoG penka BergmanLab Nie
	GATHER: a systems approach to interpreting genomic signatures. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 23. (1 December 2006), pp. 2926-2933. by J. T. Chang, J. R. Nevins posted to annotation bioinformatics by jfr on 2006-11-08 10:35:33 as along with 3 people guhjy bertelsen minostro
	EGASP: the human ENCODE Genome Annotation Assessment Project. [My Copy] Genome biology, Vol. 7 Suppl 1 (2006) by R. Guigó, P. Flicek, J. F. Abril, et al.A. Reymond, J. Lagarde, F. Denoeud, S. Antonarakis, M. Ashburner, V. B. Bajic, E. Birney, R. Castelo, E. Eyras, C. Ucla, T. R. Gingeras, J. Harrow, T. Hubbard, S. E. Lewis, M. G. Reese posted to annotation genomics by jfr on 2006-11-08 10:04:57 as along with 3 people and 2 groups timhubbard indigoviolet wenhan Bioinformatics EisenLab
	Sequence biases in large scale gene expression profiling data. [My Copy] Nucleic Acids Res, Vol. 34, No. 12. (2006) by A. S. Siddiqui, A. D. Delaney, A. Schnerch, O. L. Griffith, S. J. Jones, M. A. Marra posted to annotation by jfr on 2006-11-06 16:05:28 as
	A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies [My Copy] Nature Biotechnology, Vol. 24, No. 7. (02 July 2006), pp. 832-840. by Winston P. Kuo, Fang Liu, Jeff Trimarchi, et al.Claudio Punzo, Michael Lombardi, Jasjit Sarang, Mark E. Whipple, Malini Maysuria, Kyle Serikawa, Sun Y. Lee, Donald Mccrann, Jason Kang, Jeffrey R. Shearstone, Jocelyn Burke, Daniel J. Park, Xiaowei Wang, Trent L. Rector, Paola Ricciardi-Castagnoli, Steven Perrin, Sangdun Choi, Roger Bumgarner, Ju H. Kim, Glenn F. Short, Mason W. Freeman, Brian Seed, Roderick Jensen, George M. Church, Eivind Hovig, Connie L. Cepko, Peter Park, Lucila Ohno-Machado, Tor-Kristian Jenssen posted to annotation by jfr on 2006-11-06 16:02:21 as along with 3 people and 2 groups heliopais dchughes stsaft G4ID Genetics-of-Gambling

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breast_cancer	455
review	327
mirna	322
classification	261
software	254
colon_cancer	224
methodology	168
gene_expression	157
copy-number	150
network	145
microarray_technology	131
integration	130
bioinformatics	121
clustering	116
feature_selection	104
meta-analysis	89
affy	82
database	79
therapy	78
mirna_target	71
crc_bib	69
array-cgh	68
gene_set_analysis	65
low_level	64
regulation	63
systems_biology	61
pathway_analysis	59
genomics	58
snp-arrays	56
annotation	53
subtypes	53
rt-pcr	52
comment	49
quality_control	47
mutations	43
normalization	41
prognosis	41
estrogen	40
metastasis	40
ffpe	38
cancer	37
microarray_analysis	36
alternative_splicing	35
progression	35
protein_interaction	35
statistics	35
markers	34
deep_sequencing	33
fdr	33
proteomics	33
bioconductor	32
methylation	32
snp	31
class_discovery	28
tamoxifen	28
mutation	27
exon_arrays	25
r	25
standards	25
jfrbib	24
microarray_protocol	23
experiment_design	22
mir17-92	22
two-color	22
brca	21
ovarian_cancer	21
co-expression	20
comparison	20
model	20
pathway	20
tfbs	20
survival_analysis	19
functional_analysis	18
p53	18
treatment	18
kras	17
platform_comparison	17
evaluation	16
illumina	16
jfrbib04-09	16
stem_cell	16
antisense	15
biomarker	15
chip-chip	15
module_detection	15
multiple_testing	15
nmf	15
erbb	14
sequencing	14
text-mining	14
basal_subtype	13
bio_signature	13
reproducible_research	13
stageii	13
staging	13
technology	13
tma	13
cnv	12
genotyping	12
lung_cancer	12
marker	12
drug_discovery	11
egfr	11
gene_ontology	11
maqc	11
missing_values	11
protocol	11
rna_quality	11
cell_line	10
gene_lists	10
genome_browser	10
loh	10
tissue_specificity	10
disease_genes	9
msi	9
probe_design	9
pten	9
segmentation	9
semantic_web	9
boutique_arrays	8
can_genes	8
control_genes	8
e2f1	8
mirna_regulation	8
personalized_medicine	8
proliferation	8
sample_size	8
tgfb	8
visualization	8
18q_loh	7
consensus_clustering	7
immunohistochemistry	7
inter-laboratory	7
lymphoma	7
myc	7
tiling_array	7
chip-seq	6
community	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
non-coding	6
plos_rules	6
promoters	6
serum	6
stem	6
time-course	6
validation	6
correlation	5
gene_pairs	5
grid_computing	5
gwas	5
machine_learning	5
mir21	5
nci60	5
ontology	5
plos_primer	5
biobank	4
cin	4
cross-platform	4
data_curation	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
plos_start	4
pooling	4
prioritization	4
prostate_cancer	4
radiation	4
resource	4
trial	4
agilent	3
apc	3
bim	3
chemotherapy	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
hapmap	3
interaction	3
loops	3
mass_spec	3
micro_environment	3
mir192	3
open-source	3
outlier	3
pca	3
pik3ca	3
primer	3
public_data	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
survival	3
triple_negative	3
tutorial	3
web_services	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
biomarkers	2
caching	2
cdk8	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
gene_fusion	2
glioblastoma	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
lymphocytes	2
mage	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
ontologies	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
3utr	1
aging	1
akt	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cell_cycle	1
cervical_cancer	1
circulating_tumor_cells	1
clusterin	1
compression	1
cross-study	1
dasl	1
dcc	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
er	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fgfr2	1
flow_cytometry	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
genetics	1
genoty	1
her2	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
luminal_subtype	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
modules	1
myb	1
neural_networks	1
news	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
permutations	1
perturbation	1
pilot_study	1
power_analysis	1
prb	1
pre-post	1
randomization	1
rb	1
read_mapping	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
translocation	1
ucs	1
web_server	1
wiki	1

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