jfr's class_discovery [28 articles] Export Sort

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	Discovering high-order patterns of gene expression levels. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 625-637. by A. K. Wong, W. H. Au, K. C. Chan posted to class_discovery by jfr on 2008-09-29 16:18:40 as
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to class_discovery classification feature_selection microarray_analysis review by jfr on 2008-09-04 15:12:28 as along with 17 people and 1 group Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	Multidimensional scaling for large genomic data sets [My Copy] BMC Bioinformatics, Vol. 9 (04 April 2008), 179. by Jengnan Tzeng, Henry H. Lu, Wen-Hsiung Li posted to class_discovery genomics by jfr on 2008-06-17 17:01:49 as along with 2 people guhjy bakakaj
	Annotation-based Distance Measures for Patient Subgroup Discovery in Clinical Microarray Studies. [My Copy] Bioinformatics (22 June 2007) by Claudio Lottaz, Joern Toedling, Rainer Spang posted to class_discovery clustering methodology software by jfr on 2008-01-23 15:46:08 as along with 3 people rdiaz shigepong GeeSharpMinor
	Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data [My Copy] Modern Pathology, Vol. aop, No. current. by Abdulmohsen Alkushi, Blaise A. Clarke, Majid Akbari, et al.Nikita Makretsov, Peter Lim, Dianne Miller, Anthony Magliocco, Andrew Coldman, Matt van de Rijn, David Huntsman, Robin Parker, Blake C. Gilks posted to class_discovery clustering immunohistochemistry by jfr on 2007-12-04 17:49:48 as
	Automated discovery of functional generality of human gene expression programs. [My Copy] PLoS computational biology, Vol. 3, No. 8. (10 August 2007) by Georg K. Gerber, Robin D. Dowell, Tommi S. Jaakkola, David K. Gifford posted to class_discovery clustering nmf by jfr on 2007-12-04 17:44:49 as along with 3 people and 1 group ptrobajo Einat sebastien_vigneau structural_bioinformatics
	Portraits of breast cancer progression [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (06 August 2007), 291. by Gul Dalgin, Gabriela Alexe, Daniel Scanfeld, et al.Pablo Tamayo, Jill Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot posted to breast_cancer class_discovery consensus_clustering by jfr on 2007-11-27 13:32:25 as along with 4 people ptrobajo Zephyrus xtizon isimpson
	Analysis of breast cancer progression using principal component analysis and clustering. [My Copy] J Biosci, Vol. 32, No. 5. (August 2007), pp. 1027-1039. by G. Alexe, G. S. Dalgin, S. Ganesan, C. Delisi, G. Bhanot posted to breast_cancer class_discovery subtypes by jfr on 2007-11-27 13:26:40 as
	Challenges in the stratification of breast tumors for tailored therapies. [My Copy] Bull Cancer, Vol. 93, No. 8. (1 August 2006) by J. P. Thiery, X. Sastre-Garau, B. Vincent-Salomon, et al.X. Sigal-Zafrani, J. Y. Pierga, C. Decraene, J. P. Meyniel, E. Gravier, B. Asselain, Y. De Rycke, P. Hupe, E. Barillot, S. Ajaz, M. Faraldo, M. A. Deugnier, M. Glukhova, D. Medina, posted to breast_cancer class_discovery review subtypes by jfr on 2007-11-27 09:54:52 as
	A new molecular breast cancer subclass defined from a large scale real-time quantitative RT-PCR study [My Copy] BMC Cancer, Vol. 7 (05 March 2007), 39. by Maia Chanrion, Helene Fontaine, Carmen Rodriguez, et al.Vincent Negre, Frederic Bibeau, Charles Theillet, Alain Henaut, Jean-Marie Darbon posted to breast_cancer class_discovery rt-pcr subtypes by jfr on 2007-11-26 10:30:46 as
	The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma. [My Copy] Cancer Cell, Vol. 3, No. 2. (February 2003), pp. 185-197. by A. Rosenwald, G. Wright, A. Wiestner, et al.W. C. Chan, J. M. Connors, E. Campo, R. D. Gascoyne, T. M. Grogan, H. K. Muller-Hermelink, E. B. Smeland, M. Chiorazzi, J. M. Giltnane, E. M. Hurt, H. Zhao, L. Averett, S. Henrickson, L. Yang, J. Powell, W. H. Wilson, E. S. Jaffe, R. Simon, R. D. Klausner, E. Montserrat, F. Bosch, T. C. Greiner, D. D. Weisenburger, W. G. Sanger, B. J. Dave, J. C. Lynch, J. Vose, J. O. Armitage, R. I. Fisher, T. P. Miller, M. LeBlanc, G. Ott, S. Kvaloy, H. Holte, J. Delabie, L. M. Staudt posted to class_discovery proliferation by jfr on 2007-10-08 14:50:19 as along with 1 person srp33
	Bagging to improve the accuracy of a clustering procedure. [My Copy] Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1090-1099. by S. Dudoit, J. Fridlyand posted to class_discovery clustering by jfr on 2007-09-07 16:52:04 as
	An unsupervised approach to identify molecular phenotypic components influencing breast cancer features. [My Copy] Cancer Res, Vol. 64, No. 5. (1 March 2004), pp. 1584-1588. by F. M. Selaru, J. Yin, A. Olaru, et al.Y. Mori, Y. Xu, S. H. Epstein, F. Sato, E. Deacu, S. Wang, A. Sterian, A. Fulton, J. M. Abraham, D. Shibata, C. Baquet, S. A. Stass, S. J. Meltzer posted to subtypes class_discovery breast_cancer by jfr on 2007-01-30 10:12:05 as along with 1 person Zephyrus
	The molecular portraits of breast tumors are conserved across microarray platforms. [My Copy] BMC genomics, Vol. 7, No. 1. (2006), 96. by Zhiyuan Hu, Cheng Fan, Daniel S. Oh, et al.J. S. Marron, Xiaping He, Bahjat F. Qaqish, Chad Livasy, Lisa A. Carey, Evangeline Reynolds, Lynn Dressler, Andrew Nobel, Joel Parker, Matthew G. Ewend, Lynda R. Sawyer, Junyuan Wu, Yudong Liu, Rita Nanda, Maria Tretiakova, Alejandra Ruiz Orrico, Donna Dreher, Juan P. Palazzo, Laurent Perreard, Edward Nelson, Mary Mone, Heidi Hansen, Michael Mullins, John F. Quackenbush, Matthew J. Ellis, Olufunmilayo I. Olopade, Philip S. Bernard, Charles M. Perou posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 15:13:29 as along with 4 people ptrobajo giovenko frohike macavity1g
	Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers. [My Copy] Cancer Res, Vol. 66, No. 9. (1 May 2006), pp. 4636-4644. by F. Bertucci, P. Finetti, N. Cervera, et al.E. Charafe-Jauffret, E. Mamessier, J. Adélaïde, S. Debono, G. Houvenaeghel, D. Maraninchi, P. Viens, C. Charpin, J. Jacquemier, D. Birnbaum posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 15:12:31 as
	Gene expression profiling identifies molecular subtypes of inflammatory breast cancer. [My Copy] Cancer Res, Vol. 65, No. 6. (15 March 2005), pp. 2170-2178. by F. Bertucci, P. Finetti, J. Rougemont, et al.E. Charafe-Jauffret, N. Cervera, C. Tarpin, C. Nguyen, L. Xerri, R. Houlgatte, J. Jacquemier, P. Viens, D. Birnbaum posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 14:56:07 as along with 1 person macavity1g
	Loss of heterozygosity and its correlation with expression profiles in subclasses of invasive breast cancers. [My Copy] Cancer Res, Vol. 64, No. 1. (1 January 2004), pp. 64-71. by Z. C. Wang, M. Lin, L. J. Wei, et al.C. Li, A. Miron, G. Lodeiro, L. Harris, S. Ramaswamy, D. M. Tanenbaum, M. Meyerson, J. D. Iglehart, A. Richardson posted to breast_cancer class_discovery copy-number integration by jfr on 2007-01-19 14:14:43 as along with 1 person Zephyrus
	Chips to bedside: incorporation of microarray data into clinical practice. [My Copy] Clin Cancer Res, Vol. 12, No. 24. (15 December 2006), pp. 7209-7214. by L. Pusztai posted to review markers class_discovery breast_cancer by jfr on 2007-01-16 17:57:41 as along with 2 people csimmons laral
	Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response. [My Copy] Blood, Vol. 105, No. 5. (1 March 2005), pp. 1851-1861. by S. Monti, K. J. Savage, J. L. Kutok, et al.F. Feuerhake, P. Kurtin, M. Mihm, B. Wu, L. Pasqualucci, D. Neuberg, R. C. Aguiar, P. Dal Cin, C. Ladd, G. S. Pinkus, G. Salles, N. L. Harris, R. Dalla-Favera, T. M. Habermann, J. C. Aster, T. R. Golub, M. A. Shipp posted to clustering class_discovery by jfr on 2007-01-09 14:28:05 as
	Regularized linear discriminant analysis and its application in microarrays. [My Copy] Biostatistics, Vol. 8, No. 1. (January 2007), pp. 86-100. by Y. Guo, T. Hastie, R. Tibshirani posted to class_discovery bioinformatics by jfr on 2007-01-09 11:57:29 as along with 1 person eckart_bindewald
	Randomized maps for assessing the reliability of patients clusters in DNA microarray data analyses. [My Copy] Artif Intell Med, Vol. 37, No. 2. (June 2006), pp. 85-109. by A. Bertoni, G. Valentini posted to class_discovery clustering by jfr on 2007-01-09 11:08:34 as
	Hybrid hierarchical clustering with applications to microarray data [My Copy] Biostatistics, Vol. 7, No. 2. (April 2006), pp. 286-301. by Chipman, Hugh, Tibshirani, Robert posted to bioinformatics class_discovery by jfr on 2007-01-08 13:56:32 as along with 1 person djkt
	Class discovery and classification of tumor samples using mixture modeling of gene expression data--a unified approach. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2545-2552. by R. Alexandridis, S. Lin, M. Irwin posted to class_discovery by jfr on 2006-12-15 17:13:55 as
	Gene expression profiling in acute myeloid leukemia. [My Copy] J Clin Oncol, Vol. 23, No. 26. (10 September 2005), pp. 6296-6305. by L. Bullinger, P. J. Valk posted to class_discovery by jfr on 2006-12-15 17:00:04 as
	Gene expression profiling identifies clinically relevant subtypes of prostate cancer [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 3. (20 January 2004), pp. 811-816. by Jacques Lapointe, Chunde Li, John P. Higgins, et al.Matt van de Rijn, Eric Bair, Kelli Montgomery, Michelle Ferrari, Lars Egevad, Walter Rayford, Ulf Bergerheim, Peter Ekman, Angelo M. DeMarzo, Robert Tibshirani, David Botstein, Patrick O. Brown, James D. Brooks, Jonathan R. Pollack posted to class_discovery by jfr on 2006-11-07 11:02:53 as along with 3 people ipark-kaist alessandroparini tenaciousz425
	Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874. by T. Sørlie, C. M. Perou, R. Tibshirani, et al.T. Aas, S. Geisler, H. Johnsen, T. Hastie, M. B. Eisen, M. van de Rijn, S. S. Jeffrey, T. Thorsen, H. Quist, J. C. Matese, P. O. Brown, D. Botstein, P. Eystein Lønning, A. L. Børresen-Dale posted to breast_cancer class_discovery by jfr on 2006-02-14 07:49:07 as along with 5 people Zephyrus windman83 frohike macavity1g evaf
	Molecular portraits of human breast tumours. [My Copy] Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752. by C. M. Perou, T. Sørlie, M. B. Eisen, et al.M. van de Rijn, S. S. Jeffrey, C. A. Rees, J. R. Pollack, D. T. Ross, H. Johnsen, L. A. Akslen, O. Fluge, A. Pergamenschikov, C. Williams, S. X. Zhu, P. E. Lønning, A. L. Børresen-Dale, P. O. Brown, D. Botstein posted to breast_cancer class_discovery by jfr on 2006-02-14 07:48:29 as along with 6 people lwaldron Zephyrus misonneh ruszczyk frohike evaf
	Repeated observation of breast tumor subtypes in independent gene expression data sets. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423. by Therese Sorlie, Robert Tibshirani, Joel Parker, et al.Trevor Hastie, J. S. Marron, Andrew Nobel, Shibing Deng, Hilde Johnsen, Robert Pesich, Stephanie Geisler, Janos Demeter, Charles M. Perou, Per E. Lønning, Patrick O. Brown, Anne-Lise L. Børresen-Dale, David Botstein posted to breast_cancer class_discovery by jfr on 2006-02-14 07:43:53 as along with 5 people ptrobajo ipark-kaist Zephyrus jo_davies frohike

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review	347
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colon_cancer	236
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methodology	169
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network	148
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gene_interaction	6
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functional_genomics	5
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biomarkers	3
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web_server	3
chromatin	3
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dna_damage	2
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oncomine	2
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braf	1
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python	1
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cervical_cancer	1
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fgf10	1
network_analysis	1
p21	1
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early-stage	1
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selection_bias	1
reproducibility	1
3utr	1
pilot_study	1
13q	1
dye_bias	1
driver_genes	1
metagene	1
meta_analysis	1
passenger_genes	1
prb	1
cancer_hallmarks	1
modules	1
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nomogram	1
graph_approach	1
peripheral_blood	1
power_analysis	1
ret	1
cables1	1
mixture_models	1
data_mining	1
rb	1
mir216a	1
translation	1
thyroid_cancer	1
assembly	1
smad7	1
pre-post	1
circulating_tumor_cells	1
neural_networks	1
fantom	1
signaling	1
mir-106b-25	1
breas_cancer	1
ndrg4	1
melanoma	1
ccnd1	1
gene_clusters	1
oncogene_addiction	1
454	1
gene_function_prediction	1
mirna221	1
pattern_discovery	1
mirna_discovery	1
taxane	1
stat3	1
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latent	1
mir16-1	1
eno1	1
formalization	1
met	1
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bmp	1
brain_cancer	1
randomization	1
association_studies	1
mcm7	1
single_cell	1
grade_index	1
markup	1
concordance	1
gene_networks	1
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genoty	1
news	1
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genome_assembly	1
resampling	1
tcga	1
er-negative	1
rnai	1
aurora_kinase	1
ucs	1
translocation	1
il8	1
mir217	1
mir155	1
gastric_cancer	1
simulation	1
bambi	1
latex	1
mir135	1
fish	1
mapk14	1
ensemble	1
dimension_reduction	1
asco	1
distance	1
mir203	1
mir196a-2	1
formats	1
transfection	1
pbc	1
ependymoma	1
study_design	1
clusterin	1
sampling	1
data_publication	1
hypoxia	1
microrna	1
oncogene	1
mirna222	1
mir31	1
mir199	1
genetics	1
mir449	1
target_discovery	1
myb	1
funding	1
aging	1
model-based	1
au-rich	1
est_analysis	1
apoptosis	1
mir126	1
module	1
biclustering	1
beads	1
pancreatic_cancer	1
mirna_pathway	1

jfr's class_discovery [28 articles] Export Sort

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