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jfr's class_discovery [28 articles]

Recent papers added to jfr's library classified by the tag class_discovery. You can also see everyone's class_discovery.
  • Discovering high-order patterns of gene expression levels.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 6. (g 2008), pp. 625-637.
    by AK Wong, WH Au, KC Chan
    posted to class_discovery by jfr on 2008-09-29 16:18:40 as **
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to review microarray_analysis feature_selection classification class_discovery by jfr on 2008-09-04 15:12:28 as *** along with 9 people and 1 group jyuh tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
  • Multidimensional scaling for large genomic data sets
    BMC Bioinformatics, Vol. 9 (04 April 2008), 179.
    by Jengnan Tzeng, Henry H Lu, Wen-Hsiung Li
    posted to class_discovery genomics by jfr on 2008-06-17 17:01:49 as ** along with 2 people jyuh bakakaj
  • Annotation-based Distance Measures for Patient Subgroup Discovery in Clinical Microarray Studies.
    Bioinformatics (22 June 2007)
    by Claudio Lottaz, Joern Toedling, Rainer Spang
    posted to class_discovery clustering methodology software by jfr on 2008-01-23 15:46:08 as read along with 3 people rdiaz shigepong GeeSharpMinor
  • Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data
    Modern Pathology, Vol. aop, No. current.
    by Abdulmohsen Alkushi, Blaise A Clarke, Majid Akbari, Nikita Makretsov, Peter Lim, Dianne Miller, Anthony Magliocco, Andrew Coldman, Matt van de Rijn, David Huntsman, Robin Parker, Blake C Gilks
    posted to class_discovery clustering immunohistochemistry by jfr on 2007-12-04 17:49:48 as *** along with 1 person Marcory
  • Automated Discovery of Functional Generality of Human Gene Expression Programs.
    PLoS Comput Biol, Vol. 3, No. 8. (10 August 2007)
    by Georg K K Gerber, Robin D D Dowell, Tommi S S Jaakkola, David K K Gifford
    posted to class_discovery clustering nmf by jfr on 2007-12-04 17:44:49 as **** along with 2 people and 1 group Einat sebastien_vigneau structural_bioinformatics
  • Portraits of breast cancer progression
    BMC Bioinformatics, Vol. 8 (06 August 2007), 291.
    by Gul S Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P Mesirov, Shridar Ganesan, Charles Delisi, Gyan Bhanot
    posted to breast_cancer class_discovery consensus_clustering by jfr on 2007-11-27 13:32:25 as read along with 2 people xtizon isimpson
  • Analysis of breast cancer progression using principal component analysis and clustering.
    J Biosci, Vol. 32, No. 5. (August 2007), pp. 1027-1039.
    by G Alexe, GS Dalgin, S Ganesan, C Delisi, G Bhanot
    posted to breast_cancer class_discovery subtypes by jfr on 2007-11-27 13:26:40 as ****
  • Challenges in the stratification of breast tumors for tailored therapies.
    Bull Cancer, Vol. 93, No. 8. (1 August 2006)
    by JP Thiery, X Sastre-Garau, B Vincent-Salomon, X Sigal-Zafrani, JY Pierga, C Decraene, JP Meyniel, E Gravier, B Asselain, Y De Rycke, P Hupe, E Barillot, S Ajaz, M Faraldo, MA Deugnier, M Glukhova, D Medina,
    posted to breast_cancer class_discovery review subtypes by jfr on 2007-11-27 09:54:52 as ****
  • A new molecular breast cancer subclass defined from a large scale real-time quantitative RT-PCR study
    BMC Cancer, Vol. 7 (05 March 2007), 39.
    by Maia Chanrion, Helene Fontaine, Carmen Rodriguez, Vincent Negre, Frederic Bibeau, Charles Theillet, Alain Henaut, Jean-Marie Darbon
    posted to breast_cancer class_discovery rt-pcr subtypes by jfr on 2007-11-26 10:30:46 as ****
  • The proliferation gene expression signature is a quantitative integrator of oncogenic events that predicts survival in mantle cell lymphoma.
    Cancer Cell, Vol. 3, No. 2. (February 2003), pp. 185-197.
    by A Rosenwald, G Wright, A Wiestner, WC Chan, JM Connors, E Campo, RD Gascoyne, TM Grogan, HK Muller-Hermelink, EB Smeland, M Chiorazzi, JM Giltnane, EM Hurt, H Zhao, L Averett, S Henrickson, L Yang, J Powell, WH Wilson, ES Jaffe, R Simon, RD Klausner, E Montserrat, F Bosch, TC Greiner, DD Weisenburger, WG Sanger, BJ Dave, JC Lynch, J Vose, JO Armitage, RI Fisher, TP Miller, M LeBlanc, G Ott, S Kvaloy, H Holte, J Delabie, LM Staudt
    posted to class_discovery proliferation by jfr on 2007-10-08 14:50:19 as **
  • Bagging to improve the accuracy of a clustering procedure.
    Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1090-1099.
    by S Dudoit, J Fridlyand
    posted to class_discovery clustering by jfr on 2007-09-07 16:52:04 as read
  • An unsupervised approach to identify molecular phenotypic components influencing breast cancer features.
    Cancer Res, Vol. 64, No. 5. (1 March 2004), pp. 1584-1588.
    by FM Selaru, J Yin, A Olaru, Y Mori, Y Xu, SH Epstein, F Sato, E Deacu, S Wang, A Sterian, A Fulton, JM Abraham, D Shibata, C Baquet, SA Stass, SJ Meltzer
    posted to subtypes class_discovery breast_cancer by jfr on 2007-01-30 10:12:05 as *
  • The molecular portraits of breast tumors are conserved across microarray platforms.
    BMC Genomics, Vol. 7 (2006)
    by Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, E Reynolds, L Dressler, A Nobel, J Parker, MG Ewend, LR Sawyer, J Wu, Y Liu, R Nanda, M Tretiakova, A Ruiz Orrico, D Dreher, JP Palazzo, L Perreard, E Nelson, M Mone, H Hansen, M Mullins, JF Quackenbush, MJ Ellis, OI Olopade, PS Bernard, CM Perou
    posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 15:13:29 as read along with 1 person macavity1g
  • Gene expression profiling shows medullary breast cancer is a subgroup of basal breast cancers.
    Cancer Res, Vol. 66, No. 9. (1 May 2006), pp. 4636-4644.
    by F Bertucci, P Finetti, N Cervera, E Charafe-Jauffret, E Mamessier, J Adélaïde, S Debono, G Houvenaeghel, D Maraninchi, P Viens, C Charpin, J Jacquemier, D Birnbaum
    posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 15:12:31 as **
  • Gene expression profiling identifies molecular subtypes of inflammatory breast cancer.
    Cancer Res, Vol. 65, No. 6. (15 March 2005), pp. 2170-2178.
    by F Bertucci, P Finetti, J Rougemont, E Charafe-Jauffret, N Cervera, C Tarpin, C Nguyen, L Xerri, R Houlgatte, J Jacquemier, P Viens, D Birnbaum
    posted to subtypes class_discovery breast_cancer by jfr on 2007-01-19 14:56:07 as * along with 1 person macavity1g
  • Loss of heterozygosity and its correlation with expression profiles in subclasses of invasive breast cancers.
    Cancer Res, Vol. 64, No. 1. (1 January 2004), pp. 64-71.
    by ZC Wang, M Lin, LJ Wei, C Li, A Miron, G Lodeiro, L Harris, S Ramaswamy, DM Tanenbaum, M Meyerson, JD Iglehart, A Richardson
    posted to breast_cancer class_discovery copy-number integration by jfr on 2007-01-19 14:14:43 as read
  • Chips to bedside: incorporation of microarray data into clinical practice.
    Clin Cancer Res, Vol. 12, No. 24. (15 December 2006), pp. 7209-7214.
    by L Pusztai
    posted to review markers class_discovery breast_cancer by jfr on 2007-01-16 17:57:41 as read along with 1 person laral
  • Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response.
    Blood, Vol. 105, No. 5. (1 March 2005), pp. 1851-1861.
    by S Monti, KJ Savage, JL Kutok, F Feuerhake, P Kurtin, M Mihm, B Wu, L Pasqualucci, D Neuberg, RC Aguiar, P Dal Cin, C Ladd, GS Pinkus, G Salles, NL Harris, R Dalla-Favera, TM Habermann, JC Aster, TR Golub, MA Shipp
    posted to clustering class_discovery by jfr on 2007-01-09 14:28:05 as ****
  • Regularized linear discriminant analysis and its application in microarrays.
    Biostatistics, Vol. 8, No. 1. (January 2007), pp. 86-100.
    by Y Guo, T Hastie, R Tibshirani
    posted to class_discovery bioinformatics by jfr on 2007-01-09 11:57:29 as * along with 1 person eckart_bindewald
  • Randomized maps for assessing the reliability of patients clusters in DNA microarray data analyses.
    Artif Intell Med, Vol. 37, No. 2. (June 2006), pp. 85-109.
    by A Bertoni, G Valentini
    posted to class_discovery clustering by jfr on 2007-01-09 11:08:34 as **
  • Hybrid hierarchical clustering with applications to microarray data
    Biostatistics, Vol. 7, No. 2. (April 2006), pp. 286-301.
    by Chipman, Hugh, Tibshirani, Robert
    posted to bioinformatics class_discovery by jfr on 2007-01-08 13:56:32 as ** along with 1 person djkt
  • Class discovery and classification of tumor samples using mixture modeling of gene expression data--a unified approach.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2545-2552.
    by R Alexandridis, S Lin, M Irwin
    posted to class_discovery by jfr on 2006-12-15 17:13:55 as **
  • Gene expression profiling in acute myeloid leukemia.
    J Clin Oncol, Vol. 23, No. 26. (10 September 2005), pp. 6296-6305.
    by L Bullinger, PJ Valk
    posted to class_discovery by jfr on 2006-12-15 17:00:04 as **
  • Gene expression profiling identifies clinically relevant subtypes of prostate cancer.
    Proc Natl Acad Sci U S A, Vol. 101, No. 3. (20 January 2004), pp. 811-816.
    by J Lapointe, C Li, JP Higgins, M van de Rijn, E Bair, K Montgomery, M Ferrari, L Egevad, W Rayford, U Bergerheim, P Ekman, AM DeMarzo, R Tibshirani, D Botstein, PO Brown, JD Brooks, JR Pollack
    posted to class_discovery by jfr on 2006-11-07 11:02:53 as read along with 1 person tenaciousz425
  • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    PNAS, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874.
    by Therese Sorlie, Charles M Perou, Robert Tibshirani, Turid Aas, Stephanie Geisler, Hilde Johnsen, Trevor Hastie, Michael B Eisen, Matt van de Rijn, Stefanie S Jeffrey, Thor Thorsen, Hanne Quist, John C Matese, Patrick O Brown, David Botstein, Per E Lonning, Anne-Lise Borresen-Dale
    posted to breast_cancer class_discovery by jfr on 2006-02-14 07:49:07 as read along with 3 people frohike macavity1g evaf
  • Molecular portraits of human breast tumours.
    Nature, Vol. 406, No. 6797. (17 August 2000), pp. 747-752.
    by CM Perou, T Sørlie, MB Eisen, M van de Rijn, SS Jeffrey, CA Rees, JR Pollack, DT Ross, H Johnsen, LA Akslen, O Fluge, A Pergamenschikov, C Williams, SX Zhu, PE Lønning, AL Børresen-Dale, PO Brown, D Botstein
    posted to breast_cancer class_discovery by jfr on 2006-02-14 07:48:29 as read along with 4 people misonneh ruszczyk frohike evaf
  • Repeated observation of breast tumor subtypes in independent gene expression data sets.
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8418-8423.
    by T Sorlie, R Tibshirani, J Parker, T Hastie, JS Marron, A Nobel, S Deng, H Johnsen, R Pesich, S Geisler, J Demeter, CM Perou, PE Lønning, PO Brown, AL Børresen-Dale, D Botstein
    posted to breast_cancer class_discovery by jfr on 2006-02-14 07:43:53 as read along with 2 people jo_davies frohike
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