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jfr's clustering [90 articles]

Recent papers added to jfr's library classified by the tag clustering. You can also see everyone's clustering.
  • A visual analytics approach for understanding biclustering results from microarray data
    BMC Bioinformatics, Vol. 9 (27 May 2008), 247.
    by Rodrigo Santamaria, Roberto Theron, Luis Quintales
    posted to visualization software clustering by jfr on 2008-08-05 13:39:58 as *** along with 1 person ianturton
  • Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles
    Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1359-1366.
    by Anindya Bhattacharya, Rajat K De
    posted to clustering bioinformatics by jfr on 2008-08-04 18:13:17 as * along with 3 people barriot jyuh roys
  • Bayesian biclustering of gene expression data
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Jiajun Gu, Jun Liu
    posted to clustering by jfr on 2008-06-17 17:47:30 as * along with 4 people dragonrez bertelsen tvdbulck yangc
  • ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use.
    BMC Bioinformatics, Vol. 9 (16 April 2008), 200.
    by Piotr Kraj, Ashok Sharma, Nikhil Garge, Robert Podolsky, Richard A Mcindoe
    posted to software clustering by jfr on 2008-06-17 17:21:32 as ** along with 1 person and 1 group laughcry BioInfPDL
  • Microarray data mining using landmark gene-guided clustering
    BMC Bioinformatics, Vol. 9 (11 February 2008), 92.
    by Pankaj Chopra, Jaewoo Kang, Jiong Yang, Hyungjun Cho, Heenam S Kim, Min-Goo Lee
    posted to microarray_analysis clustering by jfr on 2008-06-17 16:55:08 as **** along with 1 person jyuh
  • Discovering multi-level structures in bio-molecular data through the Bernstein inequality.
    BMC bioinformatics, Vol. 9 Suppl 2 (2008)
    by A Bertoni, G Valentini
    posted to clustering by jfr on 2008-05-21 13:36:21 as **
  • Clustering millions of tandem mass spectra.
    Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 113-122.
    by AM Frank, N Bandeira, Z Shen, S Tanner, SP Briggs, RD Smith, PA Pevzner
    posted to proteomics clustering by jfr on 2008-04-30 18:17:05 as ** along with 1 person jyuh
  • Building pathway clusters from Random Forests classification using class votes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Herbert Pang, Hongyu Zhao
    posted to pathway_analysis network clustering by jfr on 2008-04-29 15:40:12 as **** along with 4 people AlexanderPico jyuh xtizon thomaskelder
  • Reducing Microarray Data via Nonnegative Matrix Factorization for Visualization and Clustering Analysis
    Journal of Biomedical Informatics, Vol. In Press, Accepted Manuscript
    by Weixiang Liu, Kehong Yuan, Datian Ye
    posted to nmf clustering by jfr on 2008-04-28 16:28:56 as ** along with 3 people jyuh dragonrez akastrin
  • Response projected clustering for direct association with physiological and clinical response data
    BMC Bioinformatics, Vol. 9 (31 January 2008), 76.
    by Sung-Gon Yi, Taesung Park, Jae K Lee
    posted to methodology clustering by jfr on 2008-04-28 16:22:17 as ** along with 1 person jyuh
  • New resampling method for evaluating stability of clusters
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Irina G Dresen, Tanja Boes, Johannes Huesing, Markus Neuhaeuser, Karl H Joeckel
    posted to consensus_clustering clustering by jfr on 2008-04-28 14:53:29 as ** along with 4 people and 1 group jyuh derwisch sobolevnrm RamuAnandakrishnan baker-group
  • Using repeated measurements to validate hierarchical gene clusters.
    Bioinformatics (19 January 2008)
    by Laurent Bréhélin, Olivier Gascuel, Olivier Martin
    posted to clustering methodology by jfr on 2008-04-22 08:43:13 as ** along with 3 people jyuh shigepong dfournier
  • A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data.
    J Theor Biol (4 December 2007)
    by Hongya Zhao, Alan Wee-Chung W Liew, Xudong Xie, Hong Yan
    posted to clustering by jfr on 2008-04-18 12:08:48 as ** along with 1 person dps
  • Clustering methods for microarray gene expression data.
    Omics : a journal of integrative biology, Vol. 10, No. 4. (2006), pp. 507-531.
    by N Belacel, Q Wang, M Cuperlovic-Culf
    posted to clustering review by jfr on 2008-04-15 11:34:38 as **
  • Simcluster: clustering enumeration gene expression data on the simplex space
    BMC Bioinformatics, Vol. 8 (11 July 2007), 246.
    by Ricardo ZN Vencio, Leonardo Varuzza, Carlos, Helena Brentani, Ilya Shmulevich
    posted to clustering by jfr on 2008-04-11 17:30:56 as ** along with 2 people shigepong GeeSharpMinor
  • Robust clustering in high dimensional data using statistical depths.
    BMC Bioinformatics, Vol. 8 Suppl 7 (2007)
    by Y Ding, X Dang, H Peng, D Wilkins
    posted to clustering by jfr on 2008-04-09 15:02:32 as ** along with 1 person dps
  • Techniques for clustering gene expression data
    Computers in Biology and Medicine, Vol. In Press, Corrected Proof
    by G Kerr, HJ Ruskin, M Crane, P Doolan
    posted to clustering review by jfr on 2008-04-09 14:56:26 as ** along with 3 people jyuh dps minostro
  • A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Antonio Marco, Ignacio Marin
    posted to clustering methodology by jfr on 2008-03-17 15:17:39 as ** along with 3 people ryanraaum barriot joshuabhk
  • Clustering of change patterns using Fourier coefficients
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 184-191.
    by Jaehee Kim, Haseong Kim
    posted to clustering by jfr on 2008-02-06 13:23:37 as ** along with 2 people jyuh dps
  • Analysis of a Gibbs sampler method for model-based clustering of gene expression data
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 176-183.
    by Anagha Joshi, Yves Van de Peer, Tom Michoel
    posted to clustering by jfr on 2008-02-06 13:21:12 as ** along with 3 people jyuh dps maralena
  • Model-based clustering on the unit sphere with an illustration using gene expression profiles.
    Biostatistics, Vol. 9, No. 1. (January 2008), pp. 66-80.
    by JL Dortet-Bernadet, N Wicker
    posted to clustering methodology by jfr on 2008-02-06 11:41:41 as **
  • Network constrained clustering for gene microarray data
    Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4014-4020.
    by Dongxiao Zhu, Alfred O Hero, Hong Cheng, Ritu Khanna, Anand Swaroop
    posted to clustering module_detection network by jfr on 2008-02-05 12:12:19 as ** along with 2 people abhik wnpx
  • Penalized and Weighted K-means for Clustering with Scattered Objects and Prior Information in High-throughput Biological Data.
    Bioinformatics (27 June 2007)
    by George C C Tseng
    posted to clustering by jfr on 2008-02-04 11:48:53 as * along with 3 people jyuh rdiaz shigepong
  • Clustering Microarray-Derived Gene Lists through Implicit Literature Relationships.
    Bioinformatics (30 May 2007)
    by Mark F F Burkart, Jonathan D D Wren, Jason I I Herschkowitz, Charles M M Perou, Harold R R Garner
    posted to clustering gene_lists gene_set_analysis text_mining by jfr on 2008-02-04 11:43:52 as ** along with 5 people and 1 group jyuh yas dullhunk ghattem Barend T_lab
  • CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.
    Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1843-1845.
    by Z Xiang, ZS Qin, Y He
    posted to clustering software by jfr on 2008-01-28 16:11:25 as ** along with 1 person jyuh
  • Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1607-1615.
    by V Pihur, S Datta, S Datta
    posted to clustering methodology by jfr on 2008-01-28 16:09:34 as ***
  • A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data.
    Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3025-3033.
    by AE Teschendorff, Y Wang, NL Barbosa-Morais, JD Brenton, C Caldas
    posted to clustering methodology by jfr on 2008-01-28 15:03:46 as ***
  • Annotation-based Distance Measures for Patient Subgroup Discovery in Clinical Microarray Studies.
    Bioinformatics (22 June 2007)
    by Claudio Lottaz, Joern Toedling, Rainer Spang
    posted to class_discovery clustering methodology software by jfr on 2008-01-23 15:46:08 as read along with 3 people rdiaz shigepong GeeSharpMinor
  • Evaluation of clustering algorithms for protein-protein interaction networks
    BMC Bioinformatics, Vol. 7 (06 November 2006), 488.
    by Sylvain Brohee, Jacques van Helden
    posted to clustering network protein_interaction by jfr on 2008-01-09 11:53:43 as ** along with 15 people and 1 group ethkim cerca AbnerCYH Borelli carlk pdelosri chad_davis balajis nirfriedman dquest grahamc cjeans hpaces Pao-Yang oktie EPFL_SB_ITP_LBS
  • The choice of optimal distance measure in genome-wide datasets.
    Bioinformatics, Vol. 21 Suppl 3 (1 November 2005)
    by G Glazko, A Gordon, A Mushegian
    posted to clustering distance by jfr on 2007-12-06 10:54:25 as ***
  • A multivariate analysis approach to the integration of proteomic and gene expression data.
    Proteomics, Vol. 7, No. 13. (June 2007), pp. 2162-2171.
    by A Fagan, AC Culhane, DG Higgins
    posted to clustering integration by jfr on 2007-12-06 10:50:39 as ** along with 2 people jyuh ppark
  • Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Curtis Huttenhower, Avi Flamholz, Jessica Landis, Sauhard Sahi, Chad Myers, Kellen Olszewski, Matthew Hibbs, Nathan Siemers, Olga Troyanskaya, Hilary Coller
    posted to clustering by jfr on 2007-12-05 10:52:47 as *** along with 3 people shigepong GeeSharpMinor julesyoo
  • Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data
    Modern Pathology, Vol. aop, No. current.
    by Abdulmohsen Alkushi, Blaise A Clarke, Majid Akbari, Nikita Makretsov, Peter Lim, Dianne Miller, Anthony Magliocco, Andrew Coldman, Matt van de Rijn, David Huntsman, Robin Parker, Blake C Gilks
    posted to class_discovery clustering immunohistochemistry by jfr on 2007-12-04 17:49:48 as *** along with 1 person Marcory
  • Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e161.
    by Andrew E Teschendorff, Michel Journée, Pierre A Absil, Rodolphe Sepulchre, Carlos Caldas
    posted to breast_cancer clustering by jfr on 2007-12-04 17:45:55 as read along with 2 people ghattem krokicki
  • Automated Discovery of Functional Generality of Human Gene Expression Programs.
    PLoS Comput Biol, Vol. 3, No. 8. (10 August 2007)
    by Georg K K Gerber, Robin D D Dowell, Tommi S S Jaakkola, David K K Gifford
    posted to class_discovery clustering nmf by jfr on 2007-12-04 17:44:49 as **** along with 2 people and 1 group Einat sebastien_vigneau structural_bioinformatics
  • Clustering of significant genes in prognostic studies with microarrays: Application to a clinical study for multiple myeloma.
    Stat Med (6 August 2007)
    by Shigeyuki Matsui, Takeharu Yamanaka, Bart Barlogie, John D D Shaughnessy, John Crowley
    posted to clustering metagene by jfr on 2007-12-04 17:14:32 as **
  • Statistical significance for hierarchical clustering in genetic association and microarray expression studies.
    BMC Bioinformatics, Vol. 4, No. 1. (11 December 2003)
    by MA Levenstien, Y Yang, J Ott
    posted to clustering methodology by jfr on 2007-12-04 11:42:23 as ** along with 1 person textoris
  • Unsupervised pattern recognition: An introduction to the whys and wherefores of clustering microarray data.
    Brief Bioinform, Vol. 6, No. 4. (December 2005), pp. 331-343.
    by PC Boutros, AB Okey
    posted to clustering review by jfr on 2007-12-03 19:17:36 as * along with 8 people renatomilani bertelsen metamerist tabu samal srfairclough akastrin xili03
  • A multi-stage approach to clustering and imputation of gene expression profiles
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 998-1005.
    by Dorothy S Wong, Frederick K Wong, Graham R Wood
    posted to clustering missing_values by jfr on 2007-11-23 15:03:34 as ** along with 1 person shigepong
  • Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.
    BMC Syst Biol, Vol. 1 (2007)
    by PR Bushel, RD Wolfinger, G Gibson
    posted to clustering by jfr on 2007-10-08 14:57:50 as **** along with 1 person waszak
  • Importance of data structure in comparing two dimension reduction methods for classification of microarray gene expression data
    BMC Bioinformatics, Vol. 8 (13 March 2007), 90.
    by Caroline Truntzer, Catherine Mercier, Jacques Esteve, Christian Gautier, Pascal Roy
    posted to clustering by jfr on 2007-09-12 11:56:50 as ** along with 1 person shigepong
  • Bagging to improve the accuracy of a clustering procedure.
    Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1090-1099.
    by S Dudoit, J Fridlyand
    posted to class_discovery clustering by jfr on 2007-09-07 16:52:04 as read
  • Incorporation of biological knowledge into distance for clustering genes.
    Bioinformation, Vol. 1, No. 10. (2007), pp. 396-405.
    by GM Boratyn, S Datta, S Datta
    posted to clustering by jfr on 2007-09-04 17:09:18 as **
  • Microarray learning with ABC.
    Biostatistics (14 June 2007)
    by Dhammika Amaratunga, Javier Cabrera, Vladimir Kovtun
    posted to clustering consensus_clustering methodology by jfr on 2007-08-02 14:13:57 as read along with 2 people and 1 group jyuh barry Bioinformatics
  • LS-NMF: a modified non-negative matrix factorization algorithm utilizing uncertainty estimates.
    BMC Bioinformatics, Vol. 7 (2006)
    by G Wang, AV Kossenkov, MF Ochs
    posted to clustering nmf by jfr on 2007-07-23 19:00:32 as ** along with 3 people aviad_work pliz dragonrez
  • Subsystem identification through dimensionality reduction of large-scale gene expression data.
    Genome Res, Vol. 13, No. 7. (July 2003), pp. 1706-1718.
    by PM Kim, B Tidor
    posted to clustering nmf by jfr on 2007-07-23 18:31:27 as ** along with 2 people yama_tah pliz
  • Improving molecular cancer class discovery through sparse non-negative matrix factorization
    Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 3970-3975.
    by Yuan Gao, George Church
    posted to clustering nmf by jfr on 2007-07-23 18:26:41 as ** along with 4 people kentsis dragonrez yama_tah aviad_work
  • Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.
    BMC Bioinformatics, Vol. 7 (2006)
    by P Carmona-Saez, RD Pascual-Marqui, F Tirado, JM Carazo, A Pascual-Montano
    posted to clustering nmf by jfr on 2007-07-23 18:25:29 as ** along with 3 people aviad_work pliz dps
  • bioNMF: a versatile tool for non-negative matrix factorization in biology
    BMC Bioinformatics, Vol. 7 (28 July 2006), 366.
    by Alberto Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, Jose M Carazo, Roberto D Pascual-Marqui
    posted to clustering nmf by jfr on 2007-07-23 17:35:45 as **
  • Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 58-67.
    by Thomas Grotkjaer, Ole Winther, Birgitte Regenberg, Jens Nielsen, Lars K Hansen
    posted to clustering methodology by jfr on 2007-07-19 15:58:39 as ** along with 2 people dimatura Barbaraks
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