jfr's clustering [120 articles] Export

Recent papers added to jfr's library classified by the tag clustering. You can also see everyone's clustering.

	An Integrative Analysis of microRNA and mRNA Expression-A Case Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 369-379. by Li-Xuan X. Qin posted to mirna integration gene_expression clustering cancer by jfr on 2009-11-25 14:41:02 as along with 1 person and 1 group tonamswish microRNA
	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted to model-based copy-number clustering array-cgh by jfr on 2009-11-18 14:50:01 as along with 5 people jonilaserson dolchan rdiaz kdpreter nuin
	Unsupervised selection of highly coexpressed and noncoexpressed genes using a consensus clustering approach. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 3. (June 2009), pp. 219-237. by Tung T. Nguyen, Richard S. Nowakowski, Ioannis P. Androulakis posted to time-course consensus_clustering co-expression clustering by jfr on 2009-11-15 14:30:56 as
	Mining subspace clusters from DNA microarray data using large itemset techniques. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 5. (May 2009), pp. 745-768. by Ye-In I. Chang, Jiun-Rung R. Chen, Yueh-Chi C. Tsai posted to microarray_analysis clustering by jfr on 2009-11-10 17:38:09 as
	A roadmap of clustering algorithms: finding a match for a biomedical application [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 297-314. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michael Schroeder posted to review clustering by jfr on 2009-11-04 11:17:54 as along with 14 people and 2 groups mhamidi eliasman Gorzomagnificent reyez brianb nuin m509396 jmeppley tmmurali tonamswish VGreiff sobolevnrm barry svozil baker-group Bioinformatics
	MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1165-1172. by Bracken M. King, Bruce Tidor posted to dimension_reduction clustering by jfr on 2009-11-03 17:22:55 as along with 1 person aheilbut
	A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1152-1157. by Ashok Sharma, Robert Podolsky, Jieping Zhao, Richard A. McIndoe posted to clustering by jfr on 2009-11-03 17:21:31 as along with 4 people guhjy renatomilani rdiaz nuin
	gcExplorer: interactive exploration of gene clusters. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1089-1090. by Theresa Scharl, Friedrich Leisch posted to software r clustering by jfr on 2009-11-02 17:25:29 as along with 8 people inesdesantiago jmeppley nuin dswan rdiaz guhjy heliopais druvus
	NIFTI: an evolutionary approach for finding number of clusters in microarray data. [My Copy] BMC bioinformatics, Vol. 10 (30 January 2009), 40. by S. Jonnalagadda, R. Srinivasan posted to clustering by jfr on 2009-07-22 16:22:45 as along with 2 people awarlau erexhepa
	Review of Three Latent Class Cluster Analysis Packages: Latent Gold, poLCA, and MCLUST [My Copy] The American Statistician, Vol. 63 (2009), pp. 81-91. by Dominique Haughton, Pascal Legrand, Sam Woolford posted to clustering latent review software by jfr on 2009-07-09 12:29:43 as
	Sparse canonical methods for biological data integration: application to a cross-platform study. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Kim-Anh A. Lê Cao, Pascal G. Martin, Christèle Robert-Granié, Philippe Besse posted to clustering cross-platform integration by jfr on 2009-07-03 14:24:10 as along with 7 people mayercd jlorent ptrobajo rdiaz guhjy jmeppley druvus
	A comparison of four clustering methods for brain expression microarray data [My Copy] BMC Bioinformatics, Vol. 9 (25 November 2008), 490. by Alexander, Lesley Jones posted to clustering by jfr on 2009-06-19 10:19:33 as along with 5 people akastrin daforerog irinamohorianu dswan nuin
	A novel method incorporating gene ontology information for unsupervised clustering and feature selection. [My Copy] PLoS ONE, Vol. 3, No. 12. (2008) by S. Srivastava, L. Zhang, R. Jin, C. Chan posted to clustering feature_selection gene_ontology methodology by jfr on 2009-03-16 16:45:54 as
	Fast Gene Ontology based clustering for microarray experiments [My Copy] BioData Mining, Vol. 1, No. 1. (21 November 2008), 11. by Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi posted to clustering gene_ontology by jfr on 2009-03-16 10:29:02 as along with 5 people and 1 group liblab guhjy renatomilani michaelbarton Terkko BergmanLab
	Weighted clustering of called array CGH data. [My Copy] Biostatistics (22 December 2007) by Wessel N N. Van Wieringen, Mark A A. Van De Wiel, Bauke Ylstra posted to array-cgh clustering copy-number by jfr on 2009-03-13 13:34:15 as along with 1 person rdiaz
	A review of independent component analysis application to microarray gene expression data. [My Copy] BioTechniques, Vol. 45, No. 5. (November 2008), pp. 501-520. by W. Kong, C. Vanderburg, H. Gunshin, J. Rogers, X. Huang posted to clustering pca review by jfr on 2009-03-12 11:24:17 as along with 2 people bertelsen guhjy
	Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by Kenneth Bryan, Pádraig Cunningham posted to clustering functional_classification by jfr on 2009-03-11 10:35:02 as along with 1 person meanerelk
	Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Peter Dimaggio, Scott Mcallister, Christodoulos Floudas, Xiao J. Feng, Joshua Rabinowitz, Herschel Rabitz posted to clustering by jfr on 2009-03-10 16:16:17 as along with 7 people jurgenjanes cgaugain rdiaz lptolik druvus nuin barriot
	Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Raffaele Giancarlo, Davide Scaturro, Filippo Utro posted to clustering by jfr on 2009-03-10 16:04:51 as along with 6 people imina kittipat lptolik nuin druvus isimpson
	Knowledge-guided multi-scale independent component analysis for biomarker identification [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Li Chen, Jianhua Xuan, Chen Wang, et al.Ie M. Shih, Yue Wang, Zhen Zhang, Eric Hoffman, Robert Clarke posted to biomarker clustering feature_selection by jfr on 2009-02-18 14:30:33 as along with 4 people bertelsen guhjy xtizon GeeSharpMinor
	A stable iterative method for refining discriminative gene clusters. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by M. Xu, M. Zhu, L. Zhang posted to clustering by jfr on 2009-02-18 13:49:04 as
	Fuzzy ensemble clustering based on random projections for DNA microarray data analysis. [My Copy] Artificial intelligence in medicine (16 September 2008) by Roberto Avogadri, Giorgio Valentini posted to clustering ensemble by jfr on 2008-12-12 14:30:53 as along with 1 person guhjy
	An unsupervised conditional random fields approach for clustering gene expression time series [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2467-2473. by Chang-Tsun Li, Yinyin Yuan, Roland Wilson posted to clustering time-course by jfr on 2008-11-26 11:47:47 as along with 3 people weiweiguo guhjy yina
	Complementary hierarchical clustering [My Copy] Biostat, Vol. 9, No. 3. (1 July 2008), pp. 467-483. by Gen Nowak, Robert Tibshirani posted to clustering methodology by jfr on 2008-11-05 09:35:34 as along with 3 people and 1 group guhjy Zephyrus djkt Roswell Cancer Crosstalk
	Clinically driven semi-supervised class discovery in gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by I. Steinfeld, R. Navon, D. Ardigò, I. Zavaroni, Z. Yakhini posted to clustering by jfr on 2008-10-22 10:34:58 as along with 3 people ptrobajo guhjy GeeSharpMinor
	Class-specific correlations of gene expressions: identification and their effects on clustering analyses. [My Copy] American journal of human genetics, Vol. 83, No. 2. (August 2008), pp. 269-277. by J. Zhang, J. Li, H. Deng posted to clustering gene_pairs by jfr on 2008-10-13 17:23:06 as
	Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient [My Copy] BMC Bioinformatics, Vol. 9 (18 June 2008), 288. by Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S. Hung, Ann Loraine, Stanley J. Roux posted to clustering by jfr on 2008-09-24 13:20:43 as
	Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas posted to clustering by jfr on 2008-09-22 16:57:42 as along with 5 people carlk cswinburne GeeSharpMinor chrisamiller guhjy
	Extracting expression modules from perturbational gene expression compendia [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Steven Maere, Patrick Van Dijck, Martin Kuiper posted to clustering module_detection by jfr on 2008-09-04 10:09:13 as along with 3 people lp2 barriot ptrobajo
	Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Sets [My Copy] PLoS ONE, Vol. 2, No. 11. (21 November 2007), e1195. by Yujin Hoshida, Jean-Philippe Brunet, Pablo Tamayo, Todd R. Golub, Jill P. Mesirov posted to clustering projection subtypes by jfr on 2008-09-03 16:47:11 as along with 3 people zufar aviad_work laral
	A visual analytics approach for understanding biclustering results from microarray data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (27 May 2008), 247. by Rodrigo Santamaria, Roberto Theron, Luis Quintales posted to clustering software visualization by jfr on 2008-08-05 13:39:58 as along with 4 people ngehlenborg ilyashl guhjy ianturton
	Divisive Correlation Clustering Algorithm (DCCA) for grouping of genes: detecting varying patterns in expression profiles [My Copy] Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1359-1366. by Anindya Bhattacharya, Rajat K. De posted to bioinformatics clustering by jfr on 2008-08-04 18:13:17 as along with 3 people roys guhjy barriot
	Bayesian biclustering of gene expression data. [My Copy] BMC genomics, Vol. 9 Suppl 1, No. Suppl 1. (2008), S4. by Jiajun Gu, Jun S. Liu posted to clustering by jfr on 2008-06-17 17:47:30 as along with 9 people meanerelk dolchan marti tonamswish bertelsen imina tvdbulck yangc dragonrez
	ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use. [My Copy] BMC Bioinformatics, Vol. 9 (16 April 2008), 200. by Piotr Kraj, Ashok Sharma, Nikhil Garge, Robert Podolsky, Richard A. Mcindoe posted to clustering software by jfr on 2008-06-17 17:21:32 as along with 1 person and 1 group laughcry BioInfPDL
	Microarray data mining using landmark gene-guided clustering [My Copy] BMC Bioinformatics, Vol. 9 (11 February 2008), 92. by Pankaj Chopra, Jaewoo Kang, Jiong Yang, Hyungjun Cho, Heenam S. Kim, Min-Goo Lee posted to clustering microarray_analysis by jfr on 2008-06-17 16:55:08 as along with 1 person guhjy
	Discovering multi-level structures in bio-molecular data through the Bernstein inequality. [My Copy] BMC bioinformatics, Vol. 9 Suppl 2 (2008) by A. Bertoni, G. Valentini posted to clustering by jfr on 2008-05-21 13:36:21 as along with 2 people pbellec guhjy
	Clustering millions of tandem mass spectra. [My Copy] Journal of proteome research, Vol. 7, No. 1. (January 2008), pp. 113-122. by A. M. Frank, N. Bandeira, Z. Shen, et al.S. Tanner, S. P. Briggs, R. D. Smith, P. A. Pevzner posted to clustering proteomics by jfr on 2008-04-30 18:17:05 as along with 2 people chemnerd1 guhjy
	Building pathway clusters from Random Forests classification using class votes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 87. by Herbert Pang, Hongyu Zhao posted to clustering network pathway_analysis by jfr on 2008-04-29 15:40:12 as along with 6 people ipark-kaist frohike xtizon thomaskelder guhjy AlexanderPico
	Reducing Microarray Data via Nonnegative Matrix Factorization for Visualization and Clustering Analysis [My Copy] Journal of Biomedical Informatics, Vol. In Press, Accepted Manuscript by Weixiang Liu, Kehong Yuan, Datian Ye posted to clustering nmf by jfr on 2008-04-28 16:28:56 as along with 3 people dragonrez akastrin guhjy
	Response projected clustering for direct association with physiological and clinical response data [My Copy] BMC Bioinformatics, Vol. 9 (31 January 2008), 76. by Sung-Gon Yi, Taesung Park, Jae K. Lee posted to clustering methodology by jfr on 2008-04-28 16:22:17 as along with 1 person guhjy
	New resampling method for evaluating stability of clusters [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Irina G. Dresen, Tanja Boes, Johannes Huesing, Markus Neuhaeuser, Karl H. Joeckel posted to clustering consensus_clustering by jfr on 2008-04-28 14:53:29 as along with 7 people and 2 groups ghattem Dori2008 derwisch sobolevnrm RamuAnandakrishnan guhjy aviad_work SIMR bioinformatics baker-group
	Using repeated measurements to validate hierarchical gene clusters. [My Copy] Bioinformatics (19 January 2008) by Laurent Bréhélin, Olivier Gascuel, Olivier Martin posted to clustering methodology by jfr on 2008-04-22 08:43:13 as along with 4 people and 1 group ghattem shigepong dfournier guhjy SIMR bioinformatics
	A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data. [My Copy] Journal of theoretical biology, Vol. 251, No. 2. (21 March 2008), pp. 264-274. by Hongya Zhao, Alan Wee-Chung W. Liew, Xudong Xie, Hong Yan posted to clustering by jfr on 2008-04-18 12:08:48 as along with 2 people meanerelk dps
	Clustering methods for microarray gene expression data. [My Copy] Omics : a journal of integrative biology, Vol. 10, No. 4. (2006), pp. 507-531. by N. Belacel, Q. Wang, M. Cuperlovic-Culf posted to clustering review by jfr on 2008-04-15 11:34:38 as along with 1 person akastrin
	Simcluster: clustering enumeration gene expression data on the simplex space [My Copy] BMC Bioinformatics, Vol. 8 (11 July 2007), 246. by Ricardo Z. N. Vencio, Leonardo Varuzza, Carlos, Helena Brentani, Ilya Shmulevich posted to clustering by jfr on 2008-04-11 17:30:56 as along with 2 people shigepong GeeSharpMinor
	Robust clustering in high dimensional data using statistical depths. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 7 (2007) by Y. Ding, X. Dang, H. Peng, D. Wilkins posted to clustering by jfr on 2008-04-09 15:02:32 as along with 1 person dps
	Techniques for clustering gene expression data [My Copy] Computers in Biology and Medicine, Vol. 38, No. 3. (March 2008), pp. 283-293. by G. Kerr, H. Ruskin, M. Crane, P. Doolan posted to clustering review by jfr on 2008-04-09 14:56:26 as along with 7 people svozil cgaugain giovenko frohike dps minostro guhjy
	A general strategy to determine the congruence between a hierarchical and a non-hierarchical classification [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Antonio Marco, Ignacio Marin posted to clustering methodology by jfr on 2008-03-17 15:17:39 as along with 3 people ryanraaum barriot joshuabhk
	Clustering of change patterns using Fourier coefficients [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 184-191. by Jaehee Kim, Haseong Kim posted to clustering by jfr on 2008-02-06 13:23:37 as along with 2 people guhjy dps
	Analysis of a Gibbs sampler method for model-based clustering of gene expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 176-183. by Anagha Joshi, Yves Van de Peer, Tom Michoel posted to clustering by jfr on 2008-02-06 13:21:12 as along with 5 people orzenil rdiaz guhjy dps maralena

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breast_cancer	471
review	341
mirna	336
software	273
classification	269
colon_cancer	227
gene_expression	172
methodology	169
copy-number	159
network	148
integration	137
microarray_technology	133
bioinformatics	121
clustering	120
feature_selection	105
meta-analysis	94
affy	86
database	81
therapy	80
mirna_target	75
array-cgh	69
crc_bib	69
gene_set_analysis	69
low_level	66
regulation	66
systems_biology	63
pathway_analysis	60
rt-pcr	60
genomics	59
subtypes	58
annotation	57
snp-arrays	56
comment	52
quality_control	48
normalization	44
metastasis	43
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
estrogen	40
microarray_analysis	40
cancer	38
proteomics	38
bioconductor	37
statistics	37
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
r	29
class_discovery	28
mutation	28
tamoxifen	28
standards	27
exon_arrays	25
jfrbib	24
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two-color	23
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pathway	22
brca	21
co-expression	21
comparison	21
model	20
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tfbs	20
kras	19
p53	19
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illumina	16
jfrbib04-09	16
module_detection	16
multiple_testing	16
stem_cell	16
antisense	15
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loh	11
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protocol	11
semantic_web	11
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gene_lists	10
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pten	10
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visualization	10
immunohistochemistry	9
mirna_regulation	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
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time-course	8
18q_loh	7
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myc	7
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editorial	6
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serum	6
stem	6
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er	4
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loops	3
mage	3
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pr	3
primer	3
roc	3
sage	3
small_molecule	3
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stroma	3
triple_negative	3
tutorial	3
web_server	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cell_cycle	2
cetuximab	2
chemo	2
dfs	2
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ephb	2
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gene_fusion	2
guidelines	2
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letter	2
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low-level	2
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lymphocytes	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
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rin	2
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serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_resource	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
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cloud_computing	1
clusterin	1
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fantom	1
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fish	1
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gastric_cancer	1
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target_discovery	1
taxane	1
tcga	1
tissue_origin	1
translation	1
translocation	1
ucs	1
wiki	1

jfr's clustering [120 articles] Export

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