jfr's copy-number [153 articles] Export

Recent papers added to jfr's library classified by the tag copy-number. You can also see everyone's copy-number.

	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted to model-based copy-number clustering array-cgh by jfr on 2009-11-18 14:50:01 as along with 5 people jonilaserson dolchan rdiaz kdpreter nuin
	Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 10. (15 May 2009), pp. 1223-1230. by R. Pique-Regi, A. Ortega, S. Asgharzadeh posted to copy-number by jfr on 2009-11-09 14:37:41 as along with 5 people guhjy jsatkosk humburg pkonings rdiaz
	Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1307-1313. by Zafer Barutcuoglu, Edoardo M. Airoldi, Vanessa Dumeaux, Robert E. Schapire, Olga G. Troyanskaya posted to copy-number by jfr on 2009-11-09 14:36:20 as along with 3 people rdiaz pkonings Zephyrus
	Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. [My Copy] PloS one, Vol. 4, No. 5. (2009) by Michal R. Schweiger, Martin Kerick, Bernd Timmermann, et al.Marcus W. Albrecht, Tatjana Borodina, Dmitri Parkhomchuk, Kurt Zatloukal, Hans Lehrach posted to technology mutation ffpe deep_sequencing copy-number by jfr on 2009-11-08 23:11:35 as along with 1 person reyez
	Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7131-7136. by Michal Sheffer, Manny D. Bacolod, Or Zuk, et al.Sarah F. Giardina, Hanna Pincas, Francis Barany, Philip B. Paty, William L. Gerald, Daniel A. Notterman, Eytan Domany posted to survival copy-number colon_cancer by jfr on 2009-11-08 23:03:53 as along with 2 people kdpreter rdiaz
	Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 91-104. by Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi, Eytan Domany posted to subtypes copy-number by jfr on 2009-11-08 23:01:41 as
	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes [My Copy] Molecular Cancer Research, Vol. 7, No. 4. (April 2009), pp. 511-522. by Xiaolan Hu, Howard M. Stern, Lin Ge, et al.Carol O'Brien, Lauren Haydu, Cynthia D. Honchell, Peter M. Haverty, Brock A. Peters, Thomas D. Wu, Lukas C. Amler, John Chant, David Stokoe, Mark R. Lackner, Guy Cavet posted to subtypes copy-number breast_cancer by jfr on 2009-11-08 22:06:10 as along with 2 people rdiaz Zephyrus
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1078-1079. by Björn Nilsson, Mikael Johansson, Fatima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert posted to software segmentation copy-number by jfr on 2009-11-02 17:27:22 as along with 3 people daed rdiaz pkonings
	Distinct genomic aberrations associated with ERG rearranged prostate cancer. [My Copy] Genes, chromosomes & cancer, Vol. 48, No. 4. (April 2009), pp. 366-380. by Francesca Demichelis, Sunita R. Setlur, Rameen Beroukhim, et al.Sven Perner, Jan O. Korbel, Christopher J. Lafargue, Dorothee Pflueger, Cara Pina, Matthias D. Hofer, Andrea Sboner, Maria A. Svensson, David S. Rickman, Alex Urban, Michael Snyder, Matthew Meyerson, Charles Lee, Mark B. Gerstein, Rainer Kuefer, Mark A. Rubin posted to prostate_cancer erg copy-number by jfr on 2009-11-02 17:09:03 as
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to integration copy-number classification breast_cancer by jfr on 2009-11-02 16:57:47 as along with 4 people giovenko frohike kdpreter rdiaz
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. [My Copy] Nucleic acids research, Vol. 37, No. 10. (1 June 2009), pp. 3276-3287. by Anastasis Oulas, Alexandra Boutla, Katerina Gkirtzou, Martin Reczko, Kriton Kalantidis, Panayiota Poirazi posted to mirna_discovery mirna copy-number by jfr on 2009-11-02 16:15:02 as along with 6 people and 2 groups ppgardne ashishanand nuin samgj daforerog tonamswish Journal picks microRNA
	A flexible rank-based framework for detecting copy number aberrations from array data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 722-728. by Thomas LaFramboise, Wendy Winckler, Roman K. Thomas posted to software segmentation r copy-number by jfr on 2009-11-02 14:54:14 as along with 5 people djkt rdiaz dswan guhjy pkonings
	Copy number abnormalities, MYC activity, and the genetic fingerprint of normal B cells mechanistically define the microRNA profile of diffuse large B-cell lymphoma. [My Copy] Blood, Vol. 113, No. 26. (25 June 2009), pp. 6681-6690. by Cheng Li, Sang-Woo W. Kim, Deepak Rai, et al.Aswani R. Bolla, Siddharth Adhvaryu, Marsha C. Kinney, Ryan S. Robetorye, Ricardo C. Aguiar posted to myc mirna lymphoma gene_expression copy-number by jfr on 2009-09-30 10:02:33 as along with 1 group microRNA
	The miR-106b-25 polycistron, activated by genomic amplification, functions as an oncogene by suppressing p21 and Bim. [My Copy] Gastroenterology, Vol. 136, No. 5. (May 2009), pp. 1689-1700. by T. Kan, F. Sato, T. Ito, et al.N. Matsumura, S. David, Y. Cheng, R. Agarwal, B. C. Paun, Z. Jin, A. V. Olaru, F. M. Selaru, J. P. Hamilton, J. Yang, J. M. Abraham, Y. Mori, S. J. Meltzer posted to bim copy-number mcm7 mir-106b-25 mirna p21 by jfr on 2009-07-22 14:31:23 as along with 1 group microRNA
	Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair. [My Copy] Nature genetics, Vol. 40, No. 1. (09 January 2008), pp. 102-107. by L. H. Saal, S. K. Gruvberger-Saal, C. Persson, et al.K. Lövgren, M. Jumppanen, J. Staaf, G. Jönsson, M. M. Pires, M. Maurer, K. Holm, S. Koujak, S. Subramaniyam, J. Vallon-Christersson, H. Olsson, T. Su, L. Memeo, T. Ludwig, S. P. Ethier, M. Krogh, M. Szabolcs, V. V. Murty, J. Isola, H. Hibshoosh, R. Parsons, A. Borg posted to breast_cancer copy-number mutation pten by jfr on 2009-07-22 13:41:41 as
	Estimation of tumor heterogeneity using CGH array data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by K. Wang, J. Li, S. Li, L. Bolund, C. Wiuf posted to breast_cancer copy-number metastasis by jfr on 2009-07-17 15:40:22 as along with 4 people and 1 group mdharsee rdiaz pkonings dswan Bioinformatics
	Tiling path genomic profiling of grade 3 invasive ductal breast cancers. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 8. (15 April 2009), pp. 2711-2722. by R. Natrajan, M. B. Lambros, S. M. Rodríguez-Pinilla, et al.G. Moreno-Bueno, D. S. Tan, C. Marchió, R. Vatcheva, S. Rayter, B. Mahler-Araujo, L. G. Fulford, D. Hungermann, A. Mackay, A. Grigoriadis, K. Fenwick, N. Tamber, D. Hardisson, A. Tutt, J. Palacios, C. J. Lord, H. Buerger, A. Ashworth, J. S. Reis-Filho posted to breast_cancer copy-number subtypes by jfr on 2009-07-17 10:19:30 as along with 1 person Zephyrus
	A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 861-867. by H. Bengtsson, A. Ray, P. Spellman, T. P. Speed posted to aroma copy-number normalization r by jfr on 2009-07-09 13:08:40 as along with 5 people and 1 group zufar djkt guhjy rdiaz pkonings Bioinformatics
	Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 2. (15 January 2009), pp. 441-451. by F. Andre, B. Job, P. Dessen, et al.A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, S. Delaloge, G. N. Hortobagyi, W. F. Symmans, V. Lazar, L. Pusztai posted to array-cgh breast_cancer copy-number gene_expression integration by jfr on 2009-07-06 12:41:41 as
	Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 17-23. by W. Gu, H. Choi, D. Ghosh posted to copy-number gene_expression integration by jfr on 2009-06-24 11:16:03 as
	DNA copy number alterations and expression of relevant genes in triple-negative breast cancer. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 6. (June 2008), pp. 490-499. by W. Han, E. M. Jung, J. Cho, et al.J. W. Lee, K. T. Hwang, S. J. Yang, J. J. Kang, J. Y. Bae, Y. K. Jeon, I. A. Park, M. Nicolau, S. S. Jeffrey, D. Y. Noh posted to breast_cancer copy-number triple_negative by jfr on 2009-06-24 10:49:09 as
	Genome-wide differences between microsatellite stable and unstable colorectal tumors [My Copy] Carcinogenesis, Vol. 27, No. 3. (March 2006), pp. 419-428. by Jordi Camps, Gemma Armengol, Del, et al.Juan J. Lozano, Hanna Vauhkonen, Esther Prat, Josep Egozcue, Lauro Sumoy, Sakari Knuutila, Rosa Miro posted to colon_cancer copy-number msi by jfr on 2009-06-22 11:37:51 as
	Advanced analysis and visualization of gene copy number and expression data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by R. Autio, M. Saarela, A. K. Järvinen, S. Hautaniemi, J. Astola posted to copy-number gene_expression integration software by jfr on 2009-06-19 10:03:14 as along with 3 people rdiaz Terkko jdbowes
	GEAR: genomic enrichment analysis of regional DNA copy number changes [My Copy] Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 420-421. by Tae-Min Kim, Yu-Chae Jung, Mun-Gan Rhyu, Myeong H. Jung, Yeun-Jun Chung posted to copy-number gene_set_analysis software by jfr on 2009-06-16 17:17:23 as along with 1 person rdiaz
	ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1919-1920. by W. N. van Wieringen, J. A. Belien, S. J. Vosse, E. M. Achame, B. Ylstra posted to copy-number gene_expression integration software by jfr on 2009-06-16 17:15:15 as along with 1 person csgillespie
	CGHweb: a tool for comparing DNA copy number segmentations from multiple algorithms [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 1014-1015. by Weil Lai, Vidhu Choudhary, Peter J. Park posted to array-cgh copy-number segmentation snp-arrays software by jfr on 2009-06-16 17:04:14 as along with 1 person alefox
	Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy. [My Copy] Genome research, Vol. 19, No. 2. (February 2009), pp. 276-283. by E. F. Attiyeh, S. J. Diskin, M. A. Attiyeh, et al.Y. P. Mossé, C. Hou, E. M. Jackson, C. Kim, J. Glessner, H. Hakonarson, J. A. Biegel, J. M. Maris posted to copy-number snp-arrays by jfr on 2009-04-28 13:35:14 as along with 3 people and 1 group absterga rdiaz skoch3 Koch_Lab
	Genomic and epigenetic instability in colorectal cancer pathogenesis. [My Copy] Gastroenterology, Vol. 135, No. 4. (October 2008), pp. 1079-1099. by W. M. Grady, J. M. Carethers posted to colon_cancer copy-number crc_bib by jfr on 2009-04-27 00:50:35 as along with 2 people gbloeb aprasad
	Reference Alignment of SNP Microarray Signals for Copy Number Analysis of Tumors [My Copy] Bioinformatics (3 December 2008), btn624. by Stan Pounds, Cheng Cheng, Charles Mullighan, Susana C. Raimondi, Sheila Shurtleff, James R. Downing posted to copy-number r snp_arrays by jfr on 2009-04-20 10:23:34 as along with 3 people and 1 group rdiaz dswan nuin Bioinformatics
	A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines [My Copy] Breast Cancer Research and Treatment by Alan Mackay, Narinder Tamber, Kerry Fenwick, et al.Marjan Iravani, Anita Grigoriadis, Tim Dexter, Christopher Lord, Jorge Reis-Filho, Alan Ashworth posted to breast_cancer cell_line copy-number gene_expression integration by jfr on 2009-04-14 11:22:52 as along with 1 person Zephyrus
	DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer. [My Copy] Annals of oncology : official journal of the European Society for Medical Oncology / ESMO (15 January 2009) by C Postma, M Koopman, T E E. Buffart, et al.P P P. Eijk, B Carvalho, G J J. Peters, B Ylstra, J H H. van Krieken, C J A J. Punt, G A A. Meijer posted to colon_cancer copy-number therapy by jfr on 2009-04-14 10:54:52 as along with 1 person rdiaz
	Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. [My Copy] BMC genomics, Vol. 8, No. 1. (2007) by Herbert Auer, David L. Newsom, Norma J. Nowak, et al.Kirk M. McHugh, Sunita Singh, Chack-Yung Y. Yu, Yan Yang, Gail D. Wenger, Julie M. Gastier-Foster, Karl Kornacker posted to copy-number gene_expression integration by jfr on 2009-04-14 10:49:53 as along with 1 person and 1 group shikin Bioinformatics
	An investigation of microRNAs mapping to breast cancer related genomic gain and loss regions. [My Copy] Cancer genetics and cytogenetics, Vol. 189, No. 1. (February 2009), pp. 15-23. by S. D. Selcuklu, M. C. Yakicier, A. E. Erson posted to breast_cancer cell_line copy-number mirna rt-pcr by jfr on 2009-04-14 10:47:18 as along with 1 group microRNA
	Extensive genomic copy number variation in embryonic stem cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 45. (11 November 2008), pp. 17453-17456. by Qi Liang, Nathalie Conte, William C. Skarnes, Allan Bradley posted to cnv copy-number stem_cell by jfr on 2009-03-24 15:18:44 as along with 2 people rdiaz pkonings
	Molecular Grading of Ductal Carcinoma In situ of the Breast [My Copy] Clin Cancer Res, Vol. 14, No. 24. (15 December 2008), pp. 8244-8252. by Rosemary L. Balleine, Lucy R. Webster, Sean Davis, et al.Elizabeth L. Salisbury, Juan P. Palazzo, Gordon F. Schwartz, Dennis B. Cornfield, Robert L. Walker, Karen Byth, Christine L. Clarke, Paul S. Meltzer posted to breast_cancer copy-number gene_expression grading public_data by jfr on 2009-03-23 14:23:34 as along with 1 person Zephyrus
	Weighted clustering of called array CGH data. [My Copy] Biostatistics (22 December 2007) by Wessel N N. Van Wieringen, Mark A A. Van De Wiel, Bauke Ylstra posted to array-cgh clustering copy-number by jfr on 2009-03-13 13:34:15 as along with 1 person rdiaz
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast_cancer copy-number gene_expression integration mutation by jfr on 2009-02-25 17:59:21 as along with 4 people and 2 groups shikin ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	DNA Copy-Number Alterations Underlie Gene Expression Differences between Microsatellite Stable and Unstable Colorectal Cancers. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 24. (15 December 2008), pp. 8061-8069. by R. N. Jorissen, L. Lipton, P. Gibbs, et al.M. Chapman, J. Desai, I. T. Jones, T. J. Yeatman, P. East, I. P. Tomlinson, H. W. Verspaget, L. A. Aaltonen, M. Kruhøffer, T. F. Orntoft, C. L. Andersen, O. M. Sieber posted to cin colon_cancer copy-number gene_expression msi by jfr on 2009-02-25 17:58:09 as along with 1 person Terkko
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to copy-number gene_expression glioblastoma integration methylation pathway by jfr on 2009-02-20 14:32:28 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes [My Copy] BMC Bioinformatics, Vol. 9 (07 October 2008), 422. by Raj Chari, Bradley P. Coe, Craig Wedseltoft, et al.Marie Benetti, Ian M. Wilson, Emily A. Vucic, Calum Macaulay, Raymond T. Ng, Wan L. Lam posted to copy-number gene_expression integration software by jfr on 2009-02-18 14:34:43 as along with 5 people wimufi guhjy mitko operon pengchy
	CNVDetector: locating copy number variations using array CGH data [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2773-2775. by Peng-An Chen, Hsiao-Fei Liu, Kun-Mao Chao posted to cnv copy-number software by jfr on 2009-02-18 13:17:40 as along with 4 people pkonings dswan rdiaz nuin
	Microarray-based genomic profiling reveals novel genomic aberrations in follicular lymphoma which associate with patient survival and gene expression status [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 39-54. by Carsten Schwaenen, Andreas Viardot, Hilmar Berger, et al.Thomas F. E. Barth, Stefan Bentink, Hartmut Döhner, Martina Enz, Alfred C. Feller, Martin-Leo Hansmann, Michael Hummel, Hans A. Kestler, Wolfram Klapper, Markus Kreuz, Dido Lenze, Markus Loeffler, Peter Möller, Hans-Konrad Müller-Hermelink, German Ott, Maciej Rosolowski, Andreas Rosenwald, Sandra Ruf, Reiner Siebert, Rainer Spang, Harald Stein, Lorenz Truemper, Peter Lichter, Martin Bentz, Swen Wessendorf, For posted to copy-number gene_expression integration lymphoma survival by jfr on 2009-01-29 11:07:46 as along with 1 person oelemento
	Colon cancer: it's CIN or CIMP. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5939-5940. by J. P. Issa posted to colon_cancer comment copy-number methylation by jfr on 2009-01-10 16:41:21 as
	CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 6005-6013. by Y. W. Cheng, H. Pincas, M. D. Bacolod, et al.G. Schemmann, S. F. Giardina, J. Huang, S. Barral, K. Idrees, S. A. Khan, Z. Zeng, S. Rosenberg, D. A. Notterman, J. Ott, P. Paty, F. Barany posted to colon_cancer copy-number methylation by jfr on 2009-01-10 16:40:23 as along with 2 people huiminC oelemento
	The genomic profile of HER2-amplified breast cancers: the influence of ER status. [My Copy] The Journal of pathology, Vol. 216, No. 4. (December 2008), pp. 399-407. by C. Marchiò, R. Natrajan, K. K. Shiu, et al.M. B. Lambros, S. M. Rodriguez-Pinilla, D. S. Tan, C. J. Lord, D. Hungermann, K. Fenwick, N. Tamber, A. Mackay, J. Palacios, A. Sapino, H. Buerger, A. Ashworth, J. S. Reis-Filho posted to breast_cancer copy-number erbb estrogen by jfr on 2009-01-10 16:35:39 as along with 1 person Zephyrus
	A prognostic model for the combined analysis of gene expression profiling in hepatocellular carcinoma. [My Copy] Bioinformation, Vol. 2, No. 9. (2008), pp. 395-400. by Z. C. Benny, L. J. Jack, W. Nathalie, et al.Y. Winnie, L. B. Paul, M. S. Tony, C. T. Anthony posted to classification copy-number gene_expression integration by jfr on 2009-01-09 11:35:35 as

Note: You may cite this page as: http://www.citeulike.org/user/jfr/tag/copy-number

Result page: 1 2 3 4 Next

breast_cancer	468
review	336
mirna	333
classification	268
software	268
colon_cancer	227
gene_expression	169
methodology	168
copy-number	153
network	148
microarray_technology	133
integration	132
bioinformatics	121
clustering	119
feature_selection	105
meta-analysis	94
affy	83
database	81
therapy	80
mirna_target	74
array-cgh	69
crc_bib	69
gene_set_analysis	67
low_level	66
regulation	63
systems_biology	62
pathway_analysis	60
rt-pcr	60
genomics	58
subtypes	57
annotation	56
snp-arrays	56
comment	51
quality_control	48
normalization	44
mutations	43
metastasis	42
ffpe	41
prognosis	41
deep_sequencing	40
estrogen	40
microarray_analysis	40
proteomics	38
bioconductor	37
cancer	37
statistics	36
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
class_discovery	28
r	28
tamoxifen	28
mutation	27
standards	26
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
ovarian_cancer	21
model	20
survival_analysis	20
tfbs	20
treatment	19
functional_analysis	18
kras	18
p53	18
platform_comparison	18
chip-chip	16
evaluation	16
illumina	16
jfrbib04-09	16
multiple_testing	16
stem_cell	16
technology	16
antisense	15
biomarker	15
module_detection	15
nmf	15
text-mining	15
basal_subtype	14
erbb	14
sequencing	14
bio_signature	13
reproducible_research	13
rna_quality	13
stageii	13
staging	13
tma	13
cnv	12
egfr	12
gene_ontology	12
genotyping	12
lung_cancer	12
maqc	12
marker	12
cell_line	11
drug_discovery	11
missing_values	11
proliferation	11
protocol	11
control_genes	10
disease_genes	10
gene_lists	10
genome_browser	10
loh	10
pten	10
semantic_web	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
mirna_regulation	8
personalized_medicine	8
sample_size	8
tgfb	8
time-course	8
18q_loh	7
lymphoma	7
myc	7
tiling_array	7
validation	7
community	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
nci60	6
non-coding	6
ontology	6
plos_rules	6
promoters	6
read_mapping	6
serum	6
stem	6
chemotherapy	5
cin	5
correlation	5
cross-platform	5
gene_pairs	5
grid_computing	5
gwas	5
her2	5
machine_learning	5
mir21	5
plos_primer	5
plos_start	5
radiation	5
trial	5
biobank	4
data_curation	4
er	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
pooling	4
prioritization	4
prostate_cancer	4
public_data	4
resource	4
web_services	4
agilent	3
apc	3
bim	3
biomarkers	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
functional_genomics	3
hapmap	3
interaction	3
loops	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
survival	3
triple_negative	3
tutorial	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cetuximab	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
flow_cytometry	2
gene_fusion	2
glioblastoma	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
luminal_subtype	2
lymphocytes	2
mage	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_server	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
cell_cycle	1
cervical_cancer	1
circulating_tumor_cells	1
cloud_computing	1
clusterin	1
compression	1
concordance	1
cross-species	1
cross-study	1
dasl	1
dcc	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
dye_bias	1
early-stage	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fgfr2	1
fish	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
genetics	1
genoty	1
graph_approach	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
latex	1
markup	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
model-based	1
modules	1
mrna-seq	1
myb	1
neural_networks	1
news	1
ngs	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
perturbation	1
pilot_study	1
plasma	1
power_analysis	1
prb	1
pre-post	1
python	1
randomization	1
ranked_lists	1
rb	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
single_cell	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
target_discovery	1
taxane	1
tissue_origin	1
translocation	1
ucs	1
wiki	1

jfr's copy-number [153 articles] Export

jfr's tags