jfr's feature_selection [105 articles] Export

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	A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data [My Copy] (10 Sep 2008) by Christine De Mol, Sofia Mosci, Magali Traskine, Alessandro Verri posted to microarray_analysis feature_selection by jfr on 2009-11-10 17:37:08 as
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to genomics feature_selection by jfr on 2009-11-08 22:39:28 as along with 12 people and 2 groups CorinYeats dayjm taylor73 Thaverkamp hpaces sriesenfeld APRegier dswan druvus djkt skembel idoerg Orengo Group Journal Picks iSEEM
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to pathway_analysis gene_set_analysis feature_selection by jfr on 2009-11-03 17:20:53 as along with 4 people praisan rdiaz ipark-kaist guhjy
	A flexible two-stage procedure for identifying gene sets that are differentially expressed. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1019-1025. by Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens posted to gene_set_analysis feature_selection by jfr on 2009-11-02 17:18:58 as along with 6 people zufar renatomilani dswan shikin guhjy rdiaz
	A Two-Stage Feature Selection Method for Gene Expression Data. [My Copy] Omics : a journal of integrative biology (30 January 2009) by Li-Yeh Y. Chuang, Chao-Hsuan H. Ke, Hsueh-Wei W. Chang, Cheng-Hong H. Yang posted to feature_selection classification by jfr on 2009-11-02 17:06:02 as
	New gene selection method for multiclass tumor classification by class centroid. [My Copy] Journal of biomedical informatics, Vol. 42, No. 1. (February 2009), pp. 59-65. by Qi Shen, Wei-min M. Shi, Wei Kong posted to feature_selection classification by jfr on 2009-11-02 15:57:42 as
	PADGE: analysis of heterogeneous patterns of differential gene expression. [My Copy] Physiological genomics, Vol. 32, No. 1. (19 December 2007), pp. 154-159. by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang posted to gene_expression feature_selection by jfr on 2009-11-02 15:38:14 as along with 2 people guhjy chrisamiller
	Matching methods for observational microarray studies [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 904-909. by Ruth Heller, Elisabetta Manduchi, Dylan S. Small posted to confounders feature_selection multiple_testing study_design by jfr on 2009-07-22 16:24:48 as along with 3 people and 1 group neils guhjy renatomilani Bioinformatics
	Testing significance relative to a fold-change threshold is a TREAT. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 765-771. by Davis J. McCarthy, Gordon K. Smyth posted to bioconductor feature_selection filtering multiple_testing software by jfr on 2009-07-17 16:03:44 as along with 12 people and 1 group shikin VGreiff lwaldron rschulz kmdaily rdiaz heliopais dswan bertelsen guhjy renatomilani paszkows Bioinformatics
	Detecting intergene correlation changes in microarray analysis: a new approach to gene selection [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 20. by Rui Hu, Xing Qiu, Galina Glazko, Lev Klebanov, Andrei Yakovlev posted to co-expression correlation feature_selection by jfr on 2009-07-09 12:44:48 as along with 9 people and 1 group zufar sotacam BUR44Dcul rdiaz provero Zephyrus renatomilani guhjy irinamohorianu Bioinformatics
	Incorporating pathway information into boosting estimation of high-dimensional risk prediction models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 18. by Harald Binder, Martin Schumacher posted to classification feature_selection pathway by jfr on 2009-07-09 12:42:13 as along with 5 people and 1 group zufar ajbattle rdiaz guhjy mdstobbe Bioinformatics
	Filtering for increased power for microarray data analysis. [My Copy] BMC bioinformatics, Vol. 10 (08 January 2009), 11. by A. J. Hackstadt, A. M. Hess posted to feature_selection filtering power_analysis by jfr on 2009-07-06 12:34:26 as along with 6 people and 1 group Zephyrus greg rdiaz guhjy nuin dswan Bioinformatics
	A voting approach to identify a small number of highly predictive genes using multiple classifiers. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by M. R. Hassan, M. M. Hossain, J. Bailey, G. Macintyre, J. W. Ho, K. Ramamohanarao posted to classification feature_selection by jfr on 2009-06-26 16:25:31 as
	Comparison of statistical data models for identifying differentially expressed genes using a generalized likelihood ratio test. [My Copy] Gene regulation and systems biology :, Vol. 2 (2008), pp. 125-139. by Kok-Yong Y. Seng, Robb W. Glenny, David K. Madtes, Mary E. Spilker, Paolo Vicini, Sina A. Gharib posted to comparison feature_selection by jfr on 2009-06-15 16:34:53 as
	Feature selection environment for genomic applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 October 2008), 451. by Fabricio Lopes, David Martins, Roberto Cesar posted to classification feature_selection software by jfr on 2009-06-12 09:25:47 as along with 6 people rdiaz TRHvidsten GustavoG imina lptolik operon
	A new regularized least squares support vector regression for gene selection [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 44. by Pei C. Chen, Su Y. Huang, Wei Chen, Chuhsing Hsiao posted to feature_selection by jfr on 2009-05-04 12:57:58 as along with 4 people dipenps guhjy rdiaz behindtherabbit
	Discovery of Dominant and Dormant Genes from Expression Data Using a Novel Generalization of SNR for Multi-class Problems [My Copy] BMC Bioinformatics, Vol. 9 (09 October 2008), 425. by Yu-Shuen Tsai, Chin-Teng Lin, George C. Tseng, I-Fang Chung, Nikhil R. Pal posted to classification feature_selection by jfr on 2009-04-28 10:12:26 as
	Improved Detection of Differentially Expressed Genes Through Incorporation of Gene Locations. [My Copy] Biometrics (23 January 2009) by Guanghua Xiao, Cavan Reilly, Arkady B B. Khodursky posted to feature_selection by jfr on 2009-04-17 15:34:26 as along with 1 person guhjy
	DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data. [My Copy] BMC bioinformatics, Vol. 10 (29 January 2009), 37. by D. Glez-Peña, R. Alvarez, F. Díaz, F. Fdez-Riverola posted to bioconductor feature_selection r software by jfr on 2009-04-15 13:53:52 as along with 3 people jimineep guhjy renatomilani
	Regularized gene selection in cancer microarray meta-analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (01 January 2009), 1. by Shuangge Ma, Jian Huang posted to feature_selection meta-analysis microarray_analysis by jfr on 2009-03-30 15:18:52 as along with 9 people and 1 group Zephyrus daforerog lwaldron rdiaz guhjy dswan paszkows taguchi nuin Bioinformatics
	A novel method incorporating gene ontology information for unsupervised clustering and feature selection. [My Copy] PLoS ONE, Vol. 3, No. 12. (2008) by S. Srivastava, L. Zhang, R. Jin, C. Chan posted to clustering feature_selection gene_ontology methodology by jfr on 2009-03-16 16:45:54 as
	Variance component estimation for mixed model analysis of cDNA microarray data. [My Copy] Biometrical journal. Biometrische Zeitschrift, Vol. 50, No. 6. (December 2008), pp. 927-939. by B. Sarholz, H. P. Piepho posted to feature_selection by jfr on 2009-03-16 10:00:30 as along with 1 person guhjy
	An investigation on performance of Significance Analysis of Microarray (SAM) for the comparisons of several treatments with one control in the presence of small-variance genes. [My Copy] Biometrical journal. Biometrische Zeitschrift, Vol. 50, No. 5. (October 2008), pp. 801-823. by D. Lin, Z. Shkedy, T. Burzykowski, et al.R. Ion, H. W. Göhlmann, A. D. Bondt, T. Perer, T. Geerts, I. Van den Wyngaert, L. Bijnens posted to comparison feature_selection multiple_testing by jfr on 2009-02-25 14:52:18 as along with 1 person guhjy
	Knowledge-guided multi-scale independent component analysis for biomarker identification [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Li Chen, Jianhua Xuan, Chen Wang, et al.Ie M. Shih, Yue Wang, Zhen Zhang, Eric Hoffman, Robert Clarke posted to biomarker clustering feature_selection by jfr on 2009-02-18 14:30:33 as along with 4 people bertelsen guhjy xtizon GeeSharpMinor
	Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by G. Z. Li, H. L. Bu, M. Q. Yang, X. Q. Zeng, J. Y. Yang posted to feature_selection by jfr on 2009-02-18 14:26:34 as along with 2 people bertelsen guhjy
	Selecting informative genes for discriminant analysis using multigene expression profiles. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by X. Yan, T. Zheng posted to feature_selection by jfr on 2009-02-18 14:23:57 as along with 2 people mdharsee guhjy
	Approaches to reduce false positives and false negatives in the analysis of microarray data: applications in type 1 diabetes research. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by J. Wu, N. I. Lenchik, I. C. Gerling posted to fdr feature_selection by jfr on 2009-02-18 14:22:24 as along with 1 person guhjy
	Probability fold change: a robust computational approach for identifying differentially expressed gene lists. [My Copy] Computer methods and programs in biomedicine, Vol. 93, No. 2. (February 2009), pp. 124-139. by X. Deng, J. Xu, J. Hui, C. Wang posted to feature_selection by jfr on 2009-02-18 14:13:29 as along with 1 person guhjy
	Finding rule groups to classify high dimensional gene expression datasets. [My Copy] Computational biology and chemistry, Vol. 33, No. 1. (February 2009), pp. 108-113. by J. An, Y. P. Chen posted to classification feature_selection by jfr on 2009-01-10 11:23:34 as along with 1 person Zephyrus
	Very Important Pool (VIP) genes--an application for microarray-based molecular signatures. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9 (2008) by Z. Su, H. Hong, H. Fang, L. Shi, R. Perkins, W. Tong posted to classification feature_selection by jfr on 2009-01-10 11:17:37 as along with 1 person guhjy
	Network-constrained Regularization and Variable Selection for Analysis of Genomic Data. [My Copy] Bioinformatics (1 March 2008) by Caiyan Li, Hongzhe Li posted to classification feature_selection network by jfr on 2008-11-28 14:30:55 as along with 3 people ptrobajo guhjy verdicchio
	A class comparison method with filtering-enhanced variable selection for high-dimensional data sets. [My Copy] Statistics in medicine (9 September 2008) by Lara Lusa, Edward L L. Korn, Lisa M M. McShane posted to fdr feature_selection by jfr on 2008-11-26 11:54:06 as along with 2 people guhjy giovenko
	A review of feature selection techniques in bioinformatics [My Copy] Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2507-2517. by Yvan Saeys, Inaki Inza, Pedro Larranaga posted to classification feature_selection review by jfr on 2008-11-18 15:51:58 as along with 27 people and 1 group Shibby zufar stharward jjrodriguez briordan phoenixzxl ipark-kaist prerna svozil bertelsen VGreiff rsantana druvus giovenko guhjy chad_davis aviad_work frohike grahamc shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy srp33 Bioinformatics
	Penalized feature selection and classification in bioinformatics [My Copy] Brief Bioinform, Vol. 9, No. 5. (1 September 2008), pp. 392-403. by Shuangge Ma, Jian Huang posted to classification feature_selection methodology by jfr on 2008-11-05 14:14:55 as along with 7 people kshameer svozil bertelsen VGreiff sona guhjy neils
	A Unified Framework for Finding Differentially Expressed Genes from Microarray Experiments [My Copy] BMC Bioinformatics, Vol. 8 (18 September 2007), 347. by Jahangheer S. Shaik, Mohammed Yeasin posted to feature_selection microarray_analysis by jfr on 2008-11-05 10:51:29 as along with 2 people guhjy renatomilani
	A weighted average difference method for detecting differentially expressed genes from microarray data [My Copy] Algorithms for Molecular Biology, Vol. 3 (26 June 2008), 8. by Koji Kadota, Yuji Nakai, Kentaro Shimizu posted to feature_selection microarray_analysis by jfr on 2008-09-24 13:40:15 as along with 4 people and 1 group guhjy heliopais vertikalist beete BTS-PT-AS-CS
	Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists. [My Copy] BMC bioinformatics, Vol. 9 Suppl 6 (2008) by X. Deng, J. Xu, C. Wang posted to feature_selection gene_lists by jfr on 2008-09-24 13:36:03 as along with 1 person guhjy
	Finding common genes in multiple cancer types through meta-analysis of microarray experiments: A rank aggregation approach. [My Copy] Genomics (17 June 2008) by V Pihur, Somnath Datta, Susmita Datta posted to feature_selection integration meta-analysis by jfr on 2008-09-24 11:43:41 as
	On Gene Ranking Using Replicated Microarray Time Course Data. [My Copy] Biometrics (5 June 2008) by Yu Chuan Tai, Terence P P. Speed posted to feature_selection time-course by jfr on 2008-09-24 11:33:22 as
	Evaluating Statistical Methods Using Plasmode Data Sets in the Age of Massive Public Databases: An Illustration Using False Discovery Rates [My Copy] PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000098. by Gary L. Gadbury, Qinfang Xiang, Lin Yang, Stephen Barnes, Grier P. Page, David B. Allison posted to fdr feature_selection by jfr on 2008-09-16 19:04:56 as along with 3 people djkt guhjy nuin
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to class_discovery classification feature_selection microarray_analysis review by jfr on 2008-09-04 15:12:28 as along with 17 people and 1 group Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	Finding disease candidate genes by liquid association [My Copy] Genome Biology, Vol. 8 (04 October 2007), R205. by Ker-Chau Li, Aarno Palotie, Shinsheng Yuan, et al.Denis Bronnikov, Daniel Chen, Xuelian Wei, Oi-Wa Choi, Janna Saarela, Leena Peltonen posted to feature_selection methodology by jfr on 2008-09-04 15:04:54 as along with 3 people Terkko rdiaz barriot
	Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Y. Yang, G. Z. Li, H. H. Meng, M. Q. Yang, Y. Deng posted to classification feature_selection methodology by jfr on 2008-09-04 11:06:49 as
	Genome-wide co-expression based prediction of differential expressions. [My Copy] Bioinformatics (15 November 2007) by Yinglei Lai posted to co-expression feature_selection microarray_analysis by jfr on 2008-09-03 11:13:53 as along with 4 people and 1 group guhjy shigepong aubinhon gongScience Integrative_biology_behavior
	M-BISON: microarray-based integration of data sources using networks [My Copy] BMC Bioinformatics, Vol. 9 (25 April 2008), 214. by Bernie J. Daigle, Russ B. Altman posted to feature_selection microarray_analysis by jfr on 2008-06-17 17:20:37 as along with 2 people guhjy frohike
	Empirical Bayes models for multiple probe type microarrays at the probe level. [My Copy] BMC bioinformatics, Vol. 9 (20 March 2008), 156. by Magnus Astrand, Petter Mostad, Mats Rudemo posted to affy feature_selection microarray_analysis by jfr on 2008-06-17 17:00:07 as along with 7 people daforerog bertelsen GeeSharpMinor heliopais ptrobajo guhjy Osorio
	Unequal group variances in microarray data analyses. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 9. (1 May 2008), pp. 1168-1174. by Meaza Demissie, Barbara Mascialino, Stefano Calza, Yudi Pawitan posted to fdr feature_selection microarray_analysis by jfr on 2008-06-17 16:44:57 as along with 5 people and 1 group GeeSharpMinor dswan guhjy shigepong aviad_work Bioinformatics
	Differential analysis for high density tiling microarray data [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 September 2007), 359. by Srinka Ghosh, Heather Hirsch, Edward Sekinger, Philipp Kapranov, Kevin Struhl, Thomas Gingeras posted to feature_selection tiling_array by jfr on 2008-05-16 10:10:43 as along with 4 people ashishanand humburg bertelsen GeeSharpMinor
	Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments. [My Copy] BMC bioinformatics, Vol. 9 Suppl 1 (2008) by H. Zhao, K. L. Chan, L. M. Cheng, H. Yan posted to fdr feature_selection by jfr on 2008-05-16 09:44:30 as along with 2 people naegele guhjy
	Ranking analysis of F-atatistics for microarray data [My Copy] BMC Bioinformatics, Vol. 9 (06 March 2008), 142. by Yuan-De Tan, Myriam Fornage, Hongyan Xu posted to fdr feature_selection gene_expression by jfr on 2008-05-05 11:01:54 as along with 2 people guhjy fpattyn

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breast_cancer	471
review	341
mirna	336
software	273
classification	269
colon_cancer	227
gene_expression	172
methodology	169
copy-number	159
network	148
integration	137
microarray_technology	133
bioinformatics	121
clustering	120
feature_selection	105
meta-analysis	94
affy	86
database	81
therapy	80
mirna_target	75
array-cgh	69
crc_bib	69
gene_set_analysis	69
low_level	66
regulation	66
systems_biology	63
pathway_analysis	60
rt-pcr	60
genomics	59
subtypes	58
annotation	57
snp-arrays	56
comment	52
quality_control	48
normalization	44
metastasis	43
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
estrogen	40
microarray_analysis	40
cancer	38
proteomics	38
bioconductor	37
statistics	37
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
r	29
class_discovery	28
mutation	28
tamoxifen	28
standards	27
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
ovarian_cancer	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
model	20
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tfbs	20
kras	19
p53	19
treatment	19
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nmf	15
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maqc	12
marker	12
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loh	11
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protocol	11
semantic_web	11
control_genes	10
disease_genes	10
gene_lists	10
genome_browser	10
pten	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
mirna_regulation	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
personalized_medicine	8
sample_size	8
tgfb	8
time-course	8
18q_loh	7
chemotherapy	7
lymphoma	7
myc	7
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validation	7
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correlation	6
editorial	6
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graphs	6
hpc	6
leukemia	6
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ontology	6
plos_rules	6
promoters	6
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serum	6
stem	6
cin	5
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trial	5
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er	4
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go	4
grading	4
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lims	4
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pooling	4
prostate_cancer	4
public_data	4
resource	4
survival	4
web_services	4
agilent	3
apc	3
bim	3
biomarkers	3
chromatin	3
confounders	3
copa	3
er-positive	3
evolution	3
glioblastoma	3
hapmap	3
interaction	3
loops	3
mage	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
triple_negative	3
tutorial	3
web_server	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cell_cycle	2
cetuximab	2
chemo	2
dfs	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
filtering	2
flow_cytometry	2
gene_fusion	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
low-level	2
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lymphocytes	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
ranked_lists	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_resource	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
cervical_cancer	1
circulating_tumor_cells	1
cloud_computing	1
clusterin	1
compression	1
concordance	1
cross-species	1
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early-stage	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fantom	1
fgfr2	1
fish	1
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genetics	1
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melanoma	1
met	1
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metagene	1
microrna	1
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mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
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mixture_models	1
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news	1
ngs	1
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oncogene	1
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p21	1
pancreatic_cancer	1
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pbc	1
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pilot_study	1
plasma	1
power_analysis	1
prb	1
pre-post	1
python	1
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rb	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
single_cell	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
target_discovery	1
taxane	1
tcga	1
tissue_origin	1
translation	1
translocation	1
ucs	1
wiki	1

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