jfr's gene_expression [169 articles] Export

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	Predictive signatures for chemotherapy sensitivity in breast cancer: are they ready for use in the clinic? [My Copy] European journal of cancer (Oxford, England : 1990), Vol. 45, No. 10. (July 2009), pp. 1733-1743. by Hervé Bonnefoi, Craig Underhill, Richard Iggo, David Cameron posted to review gene_expression classification chemotherapy breast_cancer by jfr on 2009-11-20 14:14:30 as
	Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial. [My Copy] The lancet oncology, Vol. 8, No. 12. (December 2007), pp. 1071-1078. by Hervé Bonnefoi, Anil Potti, Mauro Delorenzi, et al.Louis Mauriac, Mario Campone, Michèle Tubiana-Hulin, Thierry Petit, Philippe Rouanet, Jacek Jassem, Emmanuel Blot, Véronique Becette, Pierre Farmer, Sylvie André, Chaitanya R. Acharya, Sayan Mukherjee, David Cameron, Jonas Bergh, Joseph R. Nevins, Richard D. Iggo posted to validation gene_expression classification chemotherapy breast_cancer by jfr on 2009-11-20 13:58:47 as along with 1 person frohike
	Probabilistic retrieval and visualization of biologically relevant microarray experiments [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i145-153. by Jose Caldas, Nils Gehlenborg, Ali Faisal, Alvis Brazma, Samuel Kaski posted to meta-analysis gene_expression database by jfr on 2009-11-18 14:48:03 as along with 6 people ngehlenborg greg ptrobajo bertelsen guhjy shikin
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to meta-analysis gene_expression cross-species by jfr on 2009-11-18 14:43:13 as along with 12 people and 1 group roys daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Application and evaluation of automated semantic annotation of gene expression experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1543-1549. by Leon French, Suzanne Lane, Tamryn Law, Lydia Xu, Paul Pavlidis posted to semantic_web gene_expression annotation by jfr on 2009-11-18 14:42:06 as along with 3 people mitko shikin guhjy
	Genetic analysis of radiation-induced changes in human gene expression [My Copy] Nature (06 April 2009) by Denis A. Smirnov, Michael Morley, Eunice Shin, Richard S. Spielman, Vivian G. Cheung posted to radiation gene_expression by jfr on 2009-11-18 14:25:14 as along with 3 people Yoko leliavski renatomilani
	Local recurrence after breast-conserving therapy in relation to gene expression patterns in a large series of patients. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 12. (15 June 2009), pp. 4181-4190. by Bas Kreike, Hans Halfwerk, Nicola Armstrong, et al.Peter Bult, John A. Foekens, Sanne C. Veltkamp, Dimitry S. Nuyten, Harry Bartelink, Marc J. van de Vijver posted to proliferation gene_expression early-stage breast_cancer by jfr on 2009-11-18 14:09:07 as
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted to text-mining meta-analysis gene_expression functional_genomics by jfr on 2009-11-16 13:11:58 as along with 10 people and 2 groups jperkins fenghezi guhjy renatomilani VGreiff mitko dswan TRHvidsten daforerog shikin Orengo Group Journal Picks Bioinformatics
	ViaComplex: software for landscape analysis of gene expression networks in genomic context [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1468-1469. by Mauro A. A. Castro, Jose L. Filho, Rodrigo J. S. Dalmolin, et al.Marialva Sinigaglia, Jose C. F. Moreira, Jose C. M. Mombach, Rita M. C. de Almeida posted to visualization software network gene_expression by jfr on 2009-11-15 16:20:51 as along with 3 people guhjy renatomilani rdiaz
	Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1447-1448. by Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby posted to software snp gene_expression bioconductor by jfr on 2009-11-15 16:09:51 as along with 6 people guhjy druvus nuin rdiaz djkt giovanni
	Multicenter validation of a 1,550-gene expression profile for identification of tumor tissue of origin. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 27, No. 15. (20 May 2009), pp. 2503-2508. by Federico A. Monzon, Maureen Lyons-Weiler, Ljubomir J. Buturovic, et al.C. Ted Rigl, W. David Henner, Christin Sciulli, Catherine I. Dumur, Fabiola Medeiros, Glenda G. Anderson posted to tissue_origin gene_expression classification by jfr on 2009-11-15 14:57:40 as
	A gene expression predictor of response to EGFR-targeted therapy stratifies progression-free survival to cetuximab in KRAS wild-type metastatic colorectal cancer. [My Copy] BMC cancer, Vol. 9, No. 1. (13 May 2009), 145. by Justin M. Balko, Esther P. Black posted to therapy gene_expression egfr colon_cancer classification cetuximab by jfr on 2009-11-15 14:27:04 as along with 1 person frohike
	Recent advances in systemic therapy. New diagnostics and biological predictors of outcome in early breast cancer [My Copy] Breast Cancer Research, Vol. 11, No. 2. (03 April 2009), 205. by Catherine Oakman, Silvia Bessi, Elena Zafarana, Francesca Galardi, Laura Biganzoli, Angelo Di Leo posted to review gene_expression breast_cancer biomarkers by jfr on 2009-11-08 22:48:04 as
	Genomic Grade Index Is Associated With Response to Chemotherapy in Patients With Breast Cancer [My Copy] J Clin Oncol, Vol. 27, No. 19. (1 July 2009), pp. 3185-3191. by Cornelia Liedtke, Christos Hatzis, William F. Symmans, et al.Christine Desmedt, Benjamin Haibe-Kains, Vicente Valero, Henry Kuerer, Gabriel N. Hortobagyi, Martine Piccart-Gebhart, Christos Sotiriou, Lajos Pusztai posted to gene_expression chemotherapy breast_cancer by jfr on 2009-11-08 22:33:09 as
	Metastatic gene signatures and emerging novel prognostic tests in the management of early stage breast cancer. [My Copy] Clinical & experimental metastasis (18 April 2009) by Attila Tordai, Cornelia Liedtke, Lajos Pusztai posted to review prognosis gene_expression classification breast_cancer by jfr on 2009-11-04 10:24:26 as
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene. [My Copy] Omics : a journal of integrative biology, Vol. 13, No. 2. (April 2009), pp. 115-125. by Sarah L. Hockley, Karen Mathijs, Yvonne C. Staal, et al.Daniel Brewer, Ian Giddings, Joost H. van Delft, David H. Phillips posted to inter-laboratory gene_expression cross-platform by jfr on 2009-11-02 17:07:55 as
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 15. by Jennifer S. Guimbellot, Stephen W. Erickson, Tapan Mehta, et al.Hui Wen, Grier P. Page, Eric J. Sorscher, Jeong S. Hong posted to mirna_target mirna integration hypoxia gene_expression by jfr on 2009-11-02 16:29:49 as along with 1 person pengchy
	A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 11. (23 November 2008), pp. 2290-2296. by Chad J. Creighton, Ankur K. Nagaraja, Samir M. Hanash, Martin M. Matzuk, Preethi H. Gunaratne posted to software mirna_target mirna integration gene_expression by jfr on 2009-11-02 15:40:31 as along with 8 people and 1 group valeriehilgers ealloza guhjy giovenko Stew druvus pengchy bootsy microRNA database
	PADGE: analysis of heterogeneous patterns of differential gene expression. [My Copy] Physiological genomics, Vol. 32, No. 1. (19 December 2007), pp. 154-159. by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang posted to gene_expression feature_selection by jfr on 2009-11-02 15:38:14 as along with 2 people guhjy chrisamiller
	Meta-analysis of age-related gene expression profiles identifies common signatures of aging [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 875-881. by Joao P. de Magalhaes, Joao Curado, George M. Church posted to meta_analysis gene_expression aging by jfr on 2009-11-02 15:04:08 as along with 7 people and 1 group Zephyrus guhjy daforerog dswan rdiaz vertikalist renatomilani BTS-PT-AS-CS
	Prediction of breast cancer metastasis by genomic profiling: where do we stand? [My Copy] Clinical & experimental metastasis, Vol. 26, No. 6. (2009), pp. 547-558. by Ulrich Pfeffer, Francesco Romeo, Douglas M. Noonan, Adriana Albini posted to review gene_expression breast_cancer by jfr on 2009-09-30 10:09:29 as
	Derivation of molecular signatures for breast cancer recurrence prediction using a two-way validation approach. [My Copy] Breast cancer research and treatment (17 March 2009) by Yijun Sun, Virginia Urquidi, Steve Goodison posted to gene_expression classification breast_cancer by jfr on 2009-09-30 10:06:06 as
	Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue. [My Copy] Breast cancer research and treatment (6 March 2009) by Dung-Tsa T. Chen, Aejaz Nasir, Aedin Culhane, et al.Chinnambally Venkataramu, William Fulp, Renee Rubio, Tao Wang, Deepak Agrawal, Susan M. McCarthy, Mike Gruidl, Gregory Bloom, Tove Anderson, Joe White, John Quackenbush, Timothy Yeatman posted to proliferation gene_expression breast_cancer by jfr on 2009-09-30 10:05:01 as along with 1 person and 1 group Zephyrus Breast Cancer Reading Club
	Copy number abnormalities, MYC activity, and the genetic fingerprint of normal B cells mechanistically define the microRNA profile of diffuse large B-cell lymphoma. [My Copy] Blood, Vol. 113, No. 26. (25 June 2009), pp. 6681-6690. by Cheng Li, Sang-Woo W. Kim, Deepak Rai, et al.Aswani R. Bolla, Siddharth Adhvaryu, Marsha C. Kinney, Ryan S. Robetorye, Ricardo C. Aguiar posted to myc mirna lymphoma gene_expression copy-number by jfr on 2009-09-30 10:02:33 as along with 1 group microRNA
	Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours. [My Copy] BMC genomics, Vol. 10, No. 1. (26 February 2009), 93. by Ruping Sun, Xuping Fu, Yao Li, Yi Xie, Yumin Mao posted to prostate_cancer mirna_target mirna gene_expression by jfr on 2009-09-30 09:57:51 as along with 5 people and 1 group mkiyer heliopais natstreet provero neils microRNA
	Merging two gene-expression studies via cross-platform normalization [My Copy] Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1154-1160. by Andrey A. Shabalin, Hakon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel posted to normalization gene_expression cross-platform by jfr on 2009-09-30 08:58:09 as along with 5 people and 1 group zufar shikin askrajiv aviad_work guhjy Bioinformatics
	Gene expression profiling of the tumor microenvironment during breast cancer progression. [My Copy] Breast cancer research : BCR, Vol. 11, No. 1. (02 February 2009), R7. by X. J. Ma, S. Dahiya, E. Richardson, M. Erlander, D. C. Sgroi posted to breast_cancer gene_expression micro_environment by jfr on 2009-07-22 14:23:59 as along with 3 people and 1 group zufar Zephyrus provero cube_and_beyond
	Discovery and scoring of protein interaction subnetworks discriminative of late stage human colon cancer. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 4. (19 April 2009), pp. 827-845. by R. K. Nibbe, S. Markowitz, L. Myeroff, R. Ewing, M. R. Chance posted to colon_cancer gene_expression proteomics staging by jfr on 2009-07-22 13:34:19 as along with 1 person zufar
	Correlation signature of the macroscopic states of the gene regulatory network in cancer. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 11. (17 March 2009), pp. 4079-4084. by Nikolai Slavov, Kenneth A. Dawson posted to cancer gene_expression meta-analysis network prioritization by jfr on 2009-07-22 12:52:06 as along with 5 people and 1 group zufar fpattyn vertikalist rdiaz provero BTS-PT-AS-CS
	Gene expression signatures for colorectal cancer microsatellite status and HNPCC. [My Copy] British journal of cancer, Vol. 92, No. 12. (20 June 2005), pp. 2240-2248. by M. Kruhøffer, J. L. Jensen, P. Laiho, et al.L. Dyrskjøt, R. Salovaara, D. Arango, K. Birkenkamp-Demtroder, F. B. Sørensen, L. L. Christensen, L. Buhl, J. P. Mecklin, H. Järvinen, T. Thykjaer, F. P. Wikman, F. Bech-Knudsen, M. Juhola, N. N. Nupponen, S. Laurberg, C. L. Andersen, L. A. Aaltonen, T. F. Ørntoft posted to colon_cancer gene_expression msi by jfr on 2009-07-17 16:05:41 as
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted to gene_expression mirna mirna_target r software by jfr on 2009-07-17 16:00:29 as along with 10 people and 2 groups VR lwaldron guhjy Stew djkt nuin imina natstreet druvus mhamada microRNA Bioinformatics - CRUK
	Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 2. (15 January 2009), pp. 441-451. by F. Andre, B. Job, P. Dessen, et al.A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, S. Delaloge, G. N. Hortobagyi, W. F. Symmans, V. Lazar, L. Pusztai posted to array-cgh breast_cancer copy-number gene_expression integration by jfr on 2009-07-06 12:41:41 as
	Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care. [My Copy] Breast cancer research and treatment (18 February 2009) by Christopher L. Tebbit, Jun Zhai, Brian R. Untch, et al.Matthew J. Ellis, Holly K. Dressman, Rex C. Bentley, Jay A. Baker, Paul K. Marcom, Joseph R. Nevins, Jeffrey R. Marks, John A. Olson posted to breast_cancer estrogen gene_expression her2 by jfr on 2009-07-03 14:21:22 as
	Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer [My Copy] BMC Cancer, Vol. 8 (30 December 2008), 394. by Mads, Torben A. Kruse posted to breast_cancer gene_expression meta-analysis pathway_analysis by jfr on 2009-06-25 13:07:17 as along with 2 people daforerog rdiaz
	Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease. [My Copy] BMC genomics, Vol. 9 (23 December 2008), 624. by P. Pandey, B. Brors, P. K. Srivastava, et al.A. Bott, S. N. Boehn, H. J. Groene, N. Gretz posted to gene_expression integration mirna by jfr on 2009-06-25 13:05:33 as along with 2 people and 1 group roboonya heliopais microRNA
	Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 17-23. by W. Gu, H. Choi, D. Ghosh posted to copy-number gene_expression integration by jfr on 2009-06-24 11:16:03 as
	Gene expression patterns in formalin-fixed, paraffin-embedded core biopsies predict docetaxel chemosensitivity in breast cancer patients. [My Copy] Breast cancer research and treatment, Vol. 108, No. 2. (March 2008), pp. 233-240. by J. C. Chang, A. Makris, M. C. Gutierrez, et al.S. G. Hilsenbeck, J. R. Hackett, J. Jeong, M. L. Liu, J. Baker, K. Clark-Langone, F. L. Baehner, K. Sexton, S. Mohsin, T. Gray, L. Alvarez, G. C. Chamness, C. K. Osborne, S. Shak posted to breast_cancer classification gene_expression rt-pcr therapy by jfr on 2009-06-24 10:01:34 as
	Meta-analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers. [My Copy] Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 3. (March 2008), pp. 543-552. by S. K. Chan, O. L. Griffith, I. T. Tai, S. J. Jones posted to biomarker colon_cancer gene_expression meta-analysis by jfr on 2009-06-22 13:10:39 as
	Advanced analysis and visualization of gene copy number and expression data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by R. Autio, M. Saarela, A. K. Järvinen, S. Hautaniemi, J. Astola posted to copy-number gene_expression integration software by jfr on 2009-06-19 10:03:14 as along with 3 people rdiaz Terkko jdbowes
	ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1919-1920. by W. N. van Wieringen, J. A. Belien, S. J. Vosse, E. M. Achame, B. Ylstra posted to copy-number gene_expression integration software by jfr on 2009-06-16 17:15:15 as along with 1 person csgillespie
	A comprehensive functional analysis of tissue specificity of human gene expression. [My Copy] BMC biology, Vol. 6, No. 1. (2008) by Z. Dezso, Y. Nikolsky, E. Sviridov, et al.W. Shi, T. Serebriyskaya, D. Dosymbekov, A. Bugrim, E. Rakhmatulin, R. J. Brennan, A. Guryanov, K. Li, J. Blake, R. R. Samaha, T. Nikolskaya posted to control_genes gene_expression tissue_specificity by jfr on 2009-06-16 17:12:22 as along with 8 people and 1 group dolchan grahamc shikin guhjy acanario inesdesantiago imina GeeSharpMinor GeneGo
	Gene-Expression Signatures in Breast Cancer [My Copy] N Engl J Med, Vol. 360, No. 8. (19 February 2009), pp. 790-800. by Christos Sotiriou, Lajos Pusztai posted to breast_cancer classification gene_expression review subtypes by jfr on 2009-06-16 16:52:11 as along with 6 people and 1 group songpku giovenko tonamswish Zephyrus edwardli misonneh Breast Cancer Reading Club
	The Origins of Breast Cancer Prognostic Gene Expression Profiles [My Copy] Cancer Res, Vol. 69, No. 1. (1 January 2009), pp. 310-318. by Luanne Lukes, Nigel P. S. Crawford, Renard Walker, Kent W. Hunter posted to breast_cancer classification gene_expression prognosis by jfr on 2009-06-15 16:32:50 as along with 4 people and 2 groups frohike Zephyrus wimufi songpku Roswell Cancer Crosstalk Breast Cancer Reading Club
	A gene expression signature that defines breast cancer metastases [My Copy] Clinical and Experimental Metastasis by Rachel Ellsworth, Jeff Seebach, Lori Field, et al.Caroline Heckman, Jennifer Kane, Jeffrey Hooke, Brad Love, Craig Shriver posted to breast_cancer gene_expression metastasis by jfr on 2009-06-10 14:01:32 as along with 2 people Zephyrus frohike
	Gene expression profiling: canonical molecular changes and clinicopathological features in sporadic colorectal cancers. [My Copy] World journal of gastroenterology : WJG, Vol. 14, No. 43. (21 November 2008), pp. 6662-6672. by J. C. Kim, S. Y. Kim, S. A. Roh, et al.D. H. Cho, D. D. Kim, J. H. Kim, Y. S. Kim posted to colon_cancer gene_expression mutations by jfr on 2009-06-10 13:59:42 as
	Gene expression signature for recurrence in stage III colorectal cancers. [My Copy] Cancer, Vol. 115, No. 2. (15 January 2009), pp. 283-292. by T. Watanabe, T. Kobunai, E. Sakamoto, et al.Y. Yamamoto, T. Konishi, A. Horiuchi, R. Shimada, T. Oka, H. Nagawa posted to classification colon_cancer gene_expression stageiii by jfr on 2009-06-10 13:57:38 as

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breast_cancer	468
review	336
mirna	333
classification	268
software	268
colon_cancer	227
gene_expression	169
methodology	168
copy-number	153
network	148
microarray_technology	133
integration	132
bioinformatics	121
clustering	119
feature_selection	105
meta-analysis	94
affy	83
database	81
therapy	80
mirna_target	74
array-cgh	69
crc_bib	69
gene_set_analysis	67
low_level	66
regulation	63
systems_biology	62
pathway_analysis	60
rt-pcr	60
genomics	58
subtypes	57
annotation	56
snp-arrays	56
comment	51
quality_control	48
normalization	44
mutations	43
metastasis	42
ffpe	41
prognosis	41
deep_sequencing	40
estrogen	40
microarray_analysis	40
proteomics	38
bioconductor	37
cancer	37
statistics	36
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
class_discovery	28
r	28
tamoxifen	28
mutation	27
standards	26
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
ovarian_cancer	21
model	20
survival_analysis	20
tfbs	20
treatment	19
functional_analysis	18
kras	18
p53	18
platform_comparison	18
chip-chip	16
evaluation	16
illumina	16
jfrbib04-09	16
multiple_testing	16
stem_cell	16
technology	16
antisense	15
biomarker	15
module_detection	15
nmf	15
text-mining	15
basal_subtype	14
erbb	14
sequencing	14
bio_signature	13
reproducible_research	13
rna_quality	13
stageii	13
staging	13
tma	13
cnv	12
egfr	12
gene_ontology	12
genotyping	12
lung_cancer	12
maqc	12
marker	12
cell_line	11
drug_discovery	11
missing_values	11
proliferation	11
protocol	11
control_genes	10
disease_genes	10
gene_lists	10
genome_browser	10
loh	10
pten	10
semantic_web	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
mirna_regulation	8
personalized_medicine	8
sample_size	8
tgfb	8
time-course	8
18q_loh	7
lymphoma	7
myc	7
tiling_array	7
validation	7
community	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
nci60	6
non-coding	6
ontology	6
plos_rules	6
promoters	6
read_mapping	6
serum	6
stem	6
chemotherapy	5
cin	5
correlation	5
cross-platform	5
gene_pairs	5
grid_computing	5
gwas	5
her2	5
machine_learning	5
mir21	5
plos_primer	5
plos_start	5
radiation	5
trial	5
biobank	4
data_curation	4
er	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
pooling	4
prioritization	4
prostate_cancer	4
public_data	4
resource	4
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apc	3
bim	3
biomarkers	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
functional_genomics	3
hapmap	3
interaction	3
loops	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
survival	3
triple_negative	3
tutorial	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cetuximab	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
flow_cytometry	2
gene_fusion	2
glioblastoma	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
luminal_subtype	2
lymphocytes	2
mage	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_server	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
cell_cycle	1
cervical_cancer	1
circulating_tumor_cells	1
cloud_computing	1
clusterin	1
compression	1
concordance	1
cross-species	1
cross-study	1
dasl	1
dcc	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
dye_bias	1
early-stage	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fgfr2	1
fish	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
genetics	1
genoty	1
graph_approach	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
latex	1
markup	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
model-based	1
modules	1
mrna-seq	1
myb	1
neural_networks	1
news	1
ngs	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
perturbation	1
pilot_study	1
plasma	1
power_analysis	1
prb	1
pre-post	1
python	1
randomization	1
ranked_lists	1
rb	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
single_cell	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
target_discovery	1
taxane	1
tissue_origin	1
translocation	1
ucs	1
wiki	1

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