jfr's genomics [59 articles] Export

Recent papers added to jfr's library classified by the tag genomics. You can also see everyone's genomics.

	Rembrandt: helping personalized medicine become a reality through integrative translational research. [My Copy] Molecular cancer research : MCR, Vol. 7, No. 2. (1 February 2009), pp. 157-167. by Subha Madhavan, Jean-Claude C. Zenklusen, Yuri Kotliarov, Himanso Sahni, Howard A. Fine, Kenneth Buetow posted to translation software integration genomics by jfr on 2009-11-23 16:28:57 as along with 2 people frohike srp33
	Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (10 April 2009), e1000352. by James R. White, Niranjan Nagarajan, Mihai Pop posted to genomics feature_selection by jfr on 2009-11-08 22:39:28 as along with 12 people and 2 groups CorinYeats dayjm taylor73 Thaverkamp hpaces sriesenfeld APRegier dswan druvus djkt skembel idoerg Orengo Group Journal Picks iSEEM
	Tiny RNAs associated with transcription start sites in animals. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 572-578. by Ryan J. Taft, Evgeny A. Glazov, Nicole Cloonan, et al.Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, Alistair R. Forrest, Sean M. Grimmond, Kate Schroder, Katharine Irvine, Takahiro Arakawa, Mari Nakamura, Atsutaka Kubosaki, Kengo Hayashida, Chika Kawazu, Mitsuyoshi Murata, Hiromi Nishiyori, Shiro Fukuda, Jun Kawai, Carsten O. Daub, David A. Hume, Harukazu Suzuki, Valerio Orlando, Piero Carninci, Yoshihide Hayashizaki, John S. Mattick posted to genomics non-coding by jfr on 2009-07-22 16:20:41 as along with 15 people hzoltan inesdesantiago guhjy gdb xingxu fpattyn galka8_diploma tonamswish antonkratz mtagaya fenghezi ilyashl jbhiatt TRHvidsten natstreet
	Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 9. (3 March 2009), pp. 3264-3269. by Moran Yassour, Tommy Kaplan, Hunter B. Fraser, et al.Joshua Z. Levin, Jenna Pfiffner, Xian Adiconis, Gary Schroth, Shujun Luo, Irina Khrebtukova, Andreas Gnirke, Chad Nusbaum, Dawn-Anne Thompson, Nir Friedman, Aviv Regev posted to deep_sequencing genomics by jfr on 2009-07-22 12:57:26 as along with 8 people and 1 group hzoltan fstrozzi GustavoLacerda stubrown stajich GeeSharpMinor jmcq provero Mycology
	The Genome Reverse Compiler: an explorative annotation tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 35. by Andrew Warren, Joao Setubal posted to annotation bioinformatics genome_browser genomics software by jfr on 2009-07-03 16:52:46 as along with 8 people and 2 groups guhjy nuin natstreet Zephyrus idoerg cisevol druvus behindtherabbit Roswell Cancer Crosstalk BergmanLab
	Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 1028-1032. by Affymetrix ENCODE Transcriptome Project, Cold Spring Harbor Laboratory ENCODE Transcriptome Project posted to genomics non-coding by jfr on 2009-06-30 16:55:39 as along with 11 people guhjy gdb daforerog fenghezi jochenG rdowell mtagaya djkt jbhiatt megraw mhamada
	Integrating sequence, evolution and functional genomics in regulatory genomics. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), 202. by Martin Vingron, Alvis Brazma, Richard Coulson, et al.Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen posted to functional_analysis genomics motif regulation review by jfr on 2009-06-16 16:59:24 as along with 5 people reyez cassj pawelszczesny natstreet druvus
	What would you do if you could sequence everything? [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1125-1133. by Avak Kahvejian, John Quackenbush, John F. Thompson posted to comment deep_sequencing genomics integration by jfr on 2009-06-11 11:26:31 as along with 19 people n00c hzoltan seb1 inesdesantiago heliopais stubrown installe Annab Borelli jbhiatt Pascalichouchou bertelsen frohike natstreet druvus reyez alexknight psique GeeSharpMinor
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to genomics sequencing technology by jfr on 2009-02-10 11:06:56 as along with 8 people and 1 group jwfoley tprpip guhjy poschm jasontsai GustavoLacerda Cortel stajich Mycology
	Formulating and testing hypotheses in functional genomics. [My Copy] Artificial intelligence in medicine (11 September 2008) by Joaquin Dopazo posted to gene_set_analysis genomics review by jfr on 2009-01-10 11:16:34 as along with 1 person guhjy
	Genes mirror geography within Europe [My Copy] Nature, Vol. 456, No. 7218. (31 August 2008), pp. 98-101. by John Novembre, Toby Johnson, Katarzyna Bryc, et al.Zoltan Kutalik, Adam R. Boyko, Adam Auton, Amit Indap, Karen S. King, Sven Bergmann, Matthew R. Nelson, Matthew Stephens, Carlos D. Bustamante posted to genetics genomics snp by jfr on 2008-12-05 14:43:58 as along with 13 people and 2 groups pansapiens engelhardt anphony ArtemPankin huzz Zephyrus druvus inesdesantiago wilbur jo_davies wsjames pkonings djkt Khavkin's lab Roswell Cancer Crosstalk
	Advanced Genomic Data Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121. by Xosé M. Fernández-Suárez, Ewan Birney posted to genome_browser genomics plos_primer software by jfr on 2008-11-17 14:13:55 as along with 19 people and 1 group Zephyrus mhamada daforerog kshameer guhjy taguchi giovenko inesdesantiago usagi-kirin fgibson cisevol rdiaz aramesh2 sunhwan druvus mitko jandot jameswasmuth dullhunk BergmanLab
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to deep_sequencing genomics by jfr on 2008-09-18 15:52:35 as along with 42 people and 2 groups manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to cnv genomics sequencing by jfr on 2008-09-15 12:27:13 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	The "street light syndrome", or how protein taxonomy can bias experimental manipulations. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 4. (April 2008), pp. 349-357. by G. Markov, G. Lecointre, B. Demeneix, V. Laudet posted to annotation genomics by jfr on 2008-09-15 10:24:33 as
	Highly similar noncoding genomic DNA sequences: ultraconserved, or merely widespread? [My Copy] Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 51, No. 5. (May 2008), pp. 396-397. by D. A. Hickey posted to comment genomics by jfr on 2008-09-04 14:30:46 as along with 1 person maximilianh
	Predicting biological networks from genomic data. [My Copy] FEBS Lett (21 February 2008) by Eoghan D D. Harrington, Lars J J. Jensen, Peer Bork posted to genomics network review by jfr on 2008-09-03 11:03:56 as along with 7 people Borelli APRegier burak jmeppley dullhunk larsjuhljensen guhjy
	Is your ?gene of interest? interesting? [My Copy] Developmental Dynamics, Vol. 236, No. 10. (2007), pp. 2962-2969. by Julie C. Kiefer posted to database genomics by jfr on 2008-09-03 10:51:47 as along with 2 people and 2 groups aviad_work dchughes G4ID Genetics-of-Gambling
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment bioinformatics genomics by jfr on 2008-08-04 14:57:05 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre EisenLab microbiology_nijmegen
	The minimum information about a genome sequence (MIGS) specification. [My Copy] Nature biotechnology, Vol. 26, No. 5. (08 May 2008), pp. 541-547. by Dawn Field, George Garrity, Tanya Gray, et al.Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude DePamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank Oliver O. Glöckner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E. Lewis, Kelvin Li, Allyson L. Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta A. Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat posted to genomics sequencing standards by jfr on 2008-06-27 11:22:35 as along with 14 people and 1 group barriot balajis thegoose2 idoerg Thaverkamp sconlan Katje allysonlister jmeppley dullhunk guhjy tharris jamselem neils microbiology_nijmegen
	Can subtle changes in gene expression be consistently detected with different microarray platforms? [My Copy] BMC genomics, Vol. 9, No. 1. (2008) by Paola Pedotti, Peter A. 't Hoen, Erno Vreugdenhil, et al.Geert J. Schenk, Rolf Ham H. Vossen, Yavuz Ariyurek, Mattias de Hollander, Rowan Kuiper, Gertjan J. van Ommen, Johan T. den Dunnen, Judith M. Boer, Renée X. de Menezes posted to gene_expression genomics platform_comparison by jfr on 2008-06-17 17:38:08 as along with 6 people manduca daforerog coela shikin guhjy heliopais
	Multidimensional scaling for large genomic data sets [My Copy] BMC Bioinformatics, Vol. 9 (04 April 2008), 179. by Jengnan Tzeng, Henry H. Lu, Wen-Hsiung Li posted to class_discovery genomics by jfr on 2008-06-17 17:01:49 as along with 2 people guhjy bakakaj
	Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. [My Copy] Genome biology, Vol. 8, No. 3. (26 March 2007), R43. by Helder I. Nakaya, Paulo P. Amaral, Rodrigo Louro, et al.André Lopes, Angela A. Fachel, Yuri B. Moreira, Tarik A. El-Jundi, Aline M. da Silva, Eduardo M. Reis, Sergio Verjovski-Almeida posted to antisense genomics regulation by jfr on 2008-04-18 14:17:39 as along with 3 people and 1 group mkiyer myrtilus djkt Chinnaiyan Lab
	Data Mining in Genomics [My Copy] Clinics in Laboratory Medicine In Clinical Data Mining and Warehousing, Vol. 28, No. 1. (March 2008), pp. 145-166. by Jae K. Lee, Paul D. Williams, Sooyoung Cheon posted to bioinformatics genomics methodology review by jfr on 2008-04-18 13:11:29 as along with 3 people daforerog guhjy imrchen
	Gene expression profiling by massively parallel sequencing. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana Teixeira T. Torres, Muralidhar Metta, Birgit Ottenwälder, Christian Schlötterer posted to deep_sequencing genomics by jfr on 2008-02-29 16:48:19 as along with 18 people hzoltan manduca n00c druvus daed floatingpoint inesdesantiago orzenil guhjy dchughes stsaft echinotrix giovanni caseybrown ghattem idonaldson ohara gracio
	Characterizing the cancer genome in lung adenocarcinoma [My Copy] Nature (04 November 2007) by Barbara A. Weir, Michele S. Woo, Gad Getz, et al.Sven Perner, Li Ding, Rameen Beroukhim, William M. Lin, Michael A. Province, Aldi Kraja, Laura A. Johnson, Kinjal Shah, Mitsuo Sato, Roman K. Thomas, Justine A. Barletta, Ingrid B. Borecki, Stephen Broderick, Andrew C. Chang, Derek Y. Chiang, Lucian R. Chirieac, Jeonghee Cho, Yoshitaka Fujii, Adi F. Gazdar, Thomas Giordano, Heidi Greulich, Megan Hanna, Bruce E. Johnson, Mark G. Kris, Alex Lash, Ling Lin, Neal Lindeman, Elaine R. Mardis, John D. Mcpherson, John D. Minna, Margaret B. Morgan, Mark Nadel, Mark B. Orringer, John R. Osborne, Brad Ozenberger, Alex H. Ramos, James Robinson, Jack A. Roth, Valerie Rusch, Hidefumi Sasaki, Frances Shepherd, Carrie Sougnez, Margaret R. Spitz, Ming-Sound Tsao, David Twomey, Roel G. W. Verhaak, George M. Weinstock, David A. Wheeler, Wendy Winckler, Akihiko Yoshizawa, Soyoung Yu, Maureen F. Zakowski, Qunyuan Zhang, David G. Beer, Ignacio I. Wistuba, Mark A. Watson, Levi A. Garraway, Marc Ladanyi, William D. Travis, William Pao, Mark A. Rubin, Stacey B. Gabriel, Richard A. Gibbs, Harold E. Varmus, Richard K. Wilson, Eric S. Lander, Matthew Meyerson posted to copy-number genomics lung_cancer snp-arrays by jfr on 2008-02-19 16:51:25 as along with 1 person renatomilani
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted to breast_cancer colon_cancer crc_bib genomics mutations by jfr on 2008-01-23 14:47:37 as along with 17 people and 1 group zufar ssgong daed guhjy tmmurali rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani gwenknight cerami srp33 VUMCGenomics
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to cnv copy-number genomics by jfr on 2007-12-17 12:01:03 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando caseybrown Journal picks EisenLab
	The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics [My Copy] Nat Biotech, Vol. 25, No. 10. (October 2007), pp. 1127-1133. by Andrew R. Jones, Michael Miller, Ruedi Aebersold, et al.Rolf Apweiler, Catherine A. Ball, Alvis Brazma, James Degreef, Nigel Hardy, Henning Hermjakob, Simon J. Hubbard, Peter Hussey, Mark Igra, Helen Jenkins, Randall K. Julian, Kent Laursen, Stephen G. Oliver, Norman W. Paton, Susanna-Assunta Sansone, Ugis Sarkans, Christian J. Stoeckert, Chris F. Taylor, Patricia L. Whetzel, Joseph A. White, Paul Spellman, Angel Pizarro posted to genomics standards by jfr on 2007-12-07 17:20:17 as along with 8 people and 1 group joergkurtwegner allysonlister dullhunk CameronNeylon guhjy zwang alanrw fgibson GelML
	Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D [My Copy] Nucl. Acids Res., Vol. 35, No. 19. (8 October 2007), e128. by Fabiana Perocchi, Zhenyu Xu, Sandra Clauder-Munster, Lars M. Steinmetz posted to antisense genomics by jfr on 2007-12-07 13:38:15 as along with 5 people dswan raiyar guhjy balicea Eonwe
	Raising the estimate of functional human sequences. [My Copy] Genome Res (9 August 2007) by Michael Pheasant, John S S. Mattick posted to genomics non-coding by jfr on 2007-12-05 10:32:38 as along with 11 people and 1 group galka8_diploma hdopazo guhjy andersbj djkt grahamc lp2 cabbagezs nklee ljs mimulus_99 microRNA
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted to genomics by jfr on 2007-07-31 14:49:24 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Expression genomics in breast cancer research: microarrays at the crossroads of biology and medicine [My Copy] Breast Cancer Research, Vol. 9 (26 March 2007), 206. by Lance D. Miller, Edison T. Liu posted to breast_cancer genomics review by jfr on 2007-07-05 10:50:27 as along with 2 people laral giovenko
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biology, Vol. 5, No. 10. (2004), R73. by Eric Schadt, Stephen Edwards, Debraj Guhathakurta, et al.Dan Holder, Lisa Ying, Vladimir Svetnik, Amy Leonardson, Kyle Hart, Archie Russell, Guoya Li, Guy Cavet, John Castle, Paul Mcdonagh, Zhengyan Kan, Ronghua Chen, Andrew Kasarskis, Mihai Margarint, Ramon Caceres, Jason Johnson, Christopher Armour, Philip G. Engele, Nicholas Tsinoremas, Daniel Shoemaker posted to annotation genomics by jfr on 2007-07-02 17:07:14 as along with 4 people and 1 group humburg daforerog inesdesantiago kaspermunch Bioinformatics
	Large-scale identification of novel transcripts in the human genome. [My Copy] Genome research, Vol. 17, No. 3. (31 March 2007), pp. 287-292. by B. A. Peters, B. St Croix, T. Sjöblom, et al.J. M. Cummins, N. Silliman, J. Ptak, S. Saha, K. W. Kinzler, C. Hatzis, V. E. Velculescu posted to genomics by jfr on 2007-06-26 14:24:07 as along with 6 people and 2 groups guhjy dchughes djkt olympos grahamc bpcusack G4ID Genetics-of-Gambling
	Identification of the proliferation/differentiation switch in the cellular network of multicellular organisms. [My Copy] PLoS Comput Biol, Vol. 2, No. 11. (24 November 2006) by K. Xia, H. Xue, D. Dong, et al.S. Zhu, J. Wang, Q. Zhang, L. Hou, H. Chen, R. Tao, Z. Huang, Z. Fu, Y. G. Chen, J. D. Han posted to co-expression genomics network proliferation systems_biology by jfr on 2007-06-08 17:13:37 as along with 2 people and 1 group isimpson tmmurali Bioinformatics
	Unusual intron conservation near tissue-regulated exons found by splicing microarrays. [My Copy] PLoS Comput Biol, Vol. 2, No. 1. (January 2006) by C. W. Sugnet, K. Srinivasan, T. A. Clark, et al.G. O'Brien, M. S. Cline, H. Wang, A. Williams, D. Kulp, J. E. Blume, D. Haussler, M. Ares posted to alternative_splicing genomics by jfr on 2007-06-08 09:39:33 as
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to copy-number genomics by jfr on 2007-06-08 09:36:40 as along with 41 people and 7 groups sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	High-throughput mapping of the chromatin structure of human promoters [My Copy] Nat Biotech, Vol. 25, No. 2. (February 2007), pp. 244-248. by Fatih Ozsolak, Jun S. Song, Shirley X. Liu, David E. Fisher posted to chromatin genomics by jfr on 2007-05-14 15:48:33 as along with 8 people and 2 groups hagechouchin443 emptyhb jimeet guhjy aalibes dchughes vega ccr G4ID Genetics-of-Gambling
	Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray. [My Copy] Nucleic acids research, Vol. 32, No. 22. (2004), pp. 6627-6635. by Victor X. Jin, Yu-Wei W. Leu, Sandya Liyanarachchi, et al.Hao Sun, Meiyun Fan, Kenneth P. Nephew, Tim H-M H. Huang, Ramana V. Davuluri posted to breast_cancer estrogen genomics by jfr on 2007-05-10 17:46:13 as along with 1 person tonamswish
	xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features [My Copy] Genome Biology, Vol. 7 (20 November 2006), R111. by Shannon D. Schlueter, Matthew D. Wilkerson, Qunfeng Dong, Volker Brendel posted to software genomics by jfr on 2007-01-16 15:18:14 as
	Global analysis of microRNA target gene expression reveals that miRNA targets are lower expressed in mature mouse and Drosophila tissues than in the embryos. [My Copy] Nucleic Acids Res (7 December 2006) by Zhenbao Yu, Zhaofeng Jian, Shi-Hsiang H. Shen, Enrico Purisima, Edwin Wang posted to mirna genomics by jfr on 2007-01-12 16:42:47 as along with 2 people and 1 group heliopais tardigrade microRNA
	Genome-wide atlas of gene expression in the adult mouse brain. [My Copy] Nature, Vol. 445, No. 7124. (11 January 2007), pp. 168-176. by Ed S. Lein, Michael J. Hawrylycz, Nancy Ao, et al.Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F. Boe, Mark S. Boguski, Kevin S. Brockway, Emi J. Byrnes, Lin Chen, Li Chen, Tsuey-Ming M. Chen, Mei Chi C. Chin, Jimmy Chong, Brian E. Crook, Aneta Czaplinska, Chinh N. Dang, Suvro Datta, Nick R. Dee, Aimee L. Desaki, Tsega Desta, Ellen Diep, Tim A. Dolbeare, Matthew J. Donelan, Hong-Wei W. Dong, Jennifer G. Dougherty, Ben J. Duncan, Amanda J. Ebbert, Gregor Eichele, Lili K. Estin, Casey Faber, Benjamin A. Facer, Rick Fields, Shanna R. Fischer, Tim P. Fliss, Cliff Frensley, Sabrina N. Gates, Katie J. Glattfelder, Kevin R. Halverson, Matthew R. Hart, John G. Hohmann, Maureen P. Howell, Darren P. Jeung, Rebecca A. Johnson, Patrick T. Karr, Reena Kawal, Jolene M. Kidney, Rachel H. Knapik, Chihchau L. Kuan, James H. Lake, Annabel R. Laramee, Kirk D. Larsen, Christopher Lau, Tracy A. Lemon, Agnes J. Liang, Ying Liu, Lon T. Luong, Jesse Michaels, Judith J. Morgan, Rebecca J. Morgan, Marty T. Mortrud, Nerick F. Mosqueda, Lydia L. Ng, Randy Ng, Geralyn J. Orta, Caroline C. Overly, Tu H. Pak, Sheana E. Parry, Sayan D. Pathak, Owen C. Pearson, Ralph B. Puchalski, Zackery L. Riley, Hannah R. Rockett, Stephen A. Rowland, Joshua J. Royall, Marcos J. Ruiz, Nadia R. Sarno, Katherine Schaffnit, Nadiya V. Shapovalova, Taz Sivisay, Clifford R. Slaughterbeck, Simon C. Smith, Kimberly A. Smith, Bryan I. Smith, Andy J. Sodt, Nick N. Stewart, Kenda-Ruth R. Stumpf, Susan M. Sunkin, Madhavi Sutram, Angelene Tam, Carey D. Teemer, Christina Thaller, Carol L. Thompson, Lee R. Varnam, Axel Visel, Ray M. Whitlock, Paul E. Wohnoutka, Crissa K. Wolkey, Victoria Y. Wong, Matthew Wood, Murat B. Yaylaoglu, Rob C. Young, Brian L. Youngstrom, Xu Feng F. Yuan, Bin Zhang, Theresa A. Zwingman, Allan R. Jones posted to genomics by jfr on 2007-01-12 16:17:42 as along with 17 people and 4 groups brianb booker carlk daforerog rupachile dchughes adepace jclau mgaldzic nm JBEgwa01 cjeans N0131826 cmor rschulz dlmace jeremymiller EisenLab G4ID CHIP Genetics-of-Gambling
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to copy-number genomics snp-arrays by jfr on 2007-01-12 15:41:32 as along with 10 people and 4 groups shikin rdiaz waszak dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	Accurate and reliable high-throughput detection of copy number variation in the human genome [My Copy] Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1566-1574. by Heike Fiegler, Richard Redon, Dan Andrews, et al.Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H. Perry, Bob W. Plumb, Keith Porter, Rachel E. Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J. Humphray, Stephen W. Scherer, Charles Lee, Matthew E. Hurles, Nigel P. Carter posted to copy-number genomics by jfr on 2007-01-12 15:40:39 as along with 7 people and 4 groups balicea dchughes mgaldzic shigepong ccr colinveal debasis Bioinformatics G4ID CHIP Genetics-of-Gambling
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to regulation promoters genomics by jfr on 2007-01-12 15:38:18 as along with 28 people and 4 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	Variation in alternative splicing across human tissues. [My Copy] Genome Biol, Vol. 5, No. 10. (2004) by G. Yeo, D. Holste, G. Kreiman, C. B. Burge posted to genomics alternative_splicing by jfr on 2007-01-12 10:07:49 as
	A high-resolution map of active promoters in the human genome. [My Copy] Nature, Vol. 436, No. 7052. (11 August 2005), pp. 876-880. by Tae Hoon H. Kim, Leah O. Barrera, Ming Zheng, et al.Chunxu Qu, Michael A. Singer, Todd A. Richmond, Yingnian Wu, Roland D. Green, Bing Ren posted to promoters genomics by jfr on 2007-01-11 13:50:10 as along with 7 people and 1 group inesdesantiago imouthesmp okarsligil tuck balicea sebastien_vigneau olympos Bioinformatics
	Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs [My Copy] Nature Genetics, Vol. 37, No. 9. (28 August 2005), pp. 991-996. by Brendan J. Frey, Naveed Mohammad, Quaid D. Morris, et al.Wen Zhang, Mark D. Robinson, Sanie Mnaimneh, Richard Chang, Qun Pan, Eric Sat, Janet Rossant, Benoit G. Bruneau, Jane E. Aubin, Benjamin J. Blencowe, Timothy R. Hughes posted to genomics exon_arrays by jfr on 2007-01-11 13:32:01 as
	Finding function: evaluation methods for functional genomic data [My Copy] BMC Genomics, Vol. 7 (25 July 2006), 187. by Chad L. Myers, Daniel R. Barrett, Matthew A. Hibbs, Curtis Huttenhower, Olga G. Troyanskaya posted to genomics functional_analysis by jfr on 2007-01-11 09:35:24 as along with 8 people and 2 groups saket tjimenez smbaxtersf grahamc dejori carlk marck cerca ic4 generif_paper

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breast_cancer	474
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mirna	341
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