jfr's integration [133 articles] Export

Recent papers added to jfr's library classified by the tag integration. You can also see everyone's integration.

	Rembrandt: helping personalized medicine become a reality through integrative translational research. [My Copy] Molecular cancer research : MCR, Vol. 7, No. 2. (1 February 2009), pp. 157-167. by Subha Madhavan, Jean-Claude C. Zenklusen, Yuri Kotliarov, Himanso Sahni, Howard A. Fine, Kenneth Buetow posted to translation software integration genomics by jfr on 2009-11-23 16:28:57 as along with 2 people frohike srp33
	Exploring the human genome with functional maps [My Copy] Genome Research, Vol. 19, No. 6. (1 June 2009), pp. 1093-1106. by Curtis Huttenhower, Erin M. Haley, Matthew A. Hibbs, et al.Vanessa Dumeaux, Daniel R. Barrett, Hilary A. Coller, Olga G. Troyanskaya posted to visualization software integration functional_genomics by jfr on 2009-11-19 11:25:00 as along with 9 people ptrobajo daforerog fenghezi shikin idoerg guhjy pinney grahamc pkonings
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to integration chip-seq chip-chip by jfr on 2009-11-16 13:14:33 as along with 12 people and 1 group tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to integration copy-number classification breast_cancer by jfr on 2009-11-02 16:57:47 as along with 4 people giovenko frohike kdpreter rdiaz
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 15. by Jennifer S. Guimbellot, Stephen W. Erickson, Tapan Mehta, et al.Hui Wen, Grier P. Page, Eric J. Sorscher, Jeong S. Hong posted to mirna_target mirna integration hypoxia gene_expression by jfr on 2009-11-02 16:29:49 as along with 1 person pengchy
	A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 11. (23 November 2008), pp. 2290-2296. by Chad J. Creighton, Ankur K. Nagaraja, Samir M. Hanash, Martin M. Matzuk, Preethi H. Gunaratne posted to software mirna_target mirna integration gene_expression by jfr on 2009-11-02 15:40:31 as along with 8 people and 1 group valeriehilgers ealloza guhjy giovenko Stew druvus pengchy bootsy microRNA database
	An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer. [My Copy] Cancer research, Vol. 68, No. 15. (1 August 2008), pp. 6084-6091. by Katherine Stemke-Hale, Ana Maria M. Gonzalez-Angulo, Ana Lluch, et al.Richard M. Neve, Wen-Lin L. Kuo, Michael Davies, Mark Carey, Zhi Hu, Yinghui Guan, Aysegul Sahin, W. Fraser Symmans, Lajos Pusztai, Laura K. Nolden, Hugo Horlings, Katrien Berns, Mien-Chie C. Hung, Marc J. van de Vijver, Vicente Valero, Joe W. Gray, René Bernards, Gordon B. Mills, Bryan T. Hennessy posted to akt breast_cancer integration mutation pik3ca proteomics pten by jfr on 2009-07-09 13:54:13 as
	Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 2. (15 January 2009), pp. 441-451. by F. Andre, B. Job, P. Dessen, et al.A. Tordai, S. Michiels, C. Liedtke, C. Richon, K. Yan, B. Wang, G. Vassal, S. Delaloge, G. N. Hortobagyi, W. F. Symmans, V. Lazar, L. Pusztai posted to array-cgh breast_cancer copy-number gene_expression integration by jfr on 2009-07-06 12:41:41 as
	Sparse canonical methods for biological data integration: application to a cross-platform study. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Kim-Anh A. Lê Cao, Pascal G. Martin, Christèle Robert-Granié, Philippe Besse posted to clustering cross-platform integration by jfr on 2009-07-03 14:24:10 as along with 7 people mayercd jlorent ptrobajo rdiaz guhjy jmeppley druvus
	Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease. [My Copy] BMC genomics, Vol. 9 (23 December 2008), 624. by P. Pandey, B. Brors, P. K. Srivastava, et al.A. Bott, S. N. Boehn, H. J. Groene, N. Gretz posted to gene_expression integration mirna by jfr on 2009-06-25 13:05:33 as along with 2 people and 1 group roboonya heliopais microRNA
	Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 17-23. by W. Gu, H. Choi, D. Ghosh posted to copy-number gene_expression integration by jfr on 2009-06-24 11:16:03 as
	Advanced analysis and visualization of gene copy number and expression data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by R. Autio, M. Saarela, A. K. Järvinen, S. Hautaniemi, J. Astola posted to copy-number gene_expression integration software by jfr on 2009-06-19 10:03:14 as along with 3 people rdiaz Terkko jdbowes
	ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1919-1920. by W. N. van Wieringen, J. A. Belien, S. J. Vosse, E. M. Achame, B. Ylstra posted to copy-number gene_expression integration software by jfr on 2009-06-16 17:15:15 as along with 1 person csgillespie
	What would you do if you could sequence everything? [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1125-1133. by Avak Kahvejian, John Quackenbush, John F. Thompson posted to comment deep_sequencing genomics integration by jfr on 2009-06-11 11:26:31 as along with 19 people n00c hzoltan seb1 inesdesantiago heliopais stubrown installe Annab Borelli jbhiatt Pascalichouchou bertelsen frohike natstreet druvus reyez alexknight psique GeeSharpMinor
	Building a knowledge base for systems pathology. [My Copy] Briefings in bioinformatics (10 December 2008) by Holger Michael, Jennifer Hogan, Alexander Kel, et al.Olga Kel-Margoulis, Frank Schacherer, Nico Voss, Edgar Wingender posted to integration systems_biology by jfr on 2009-04-20 12:46:20 as along with 2 people brianb guhjy
	A high-resolution integrated analysis of genetic and expression profiles of breast cancer cell lines [My Copy] Breast Cancer Research and Treatment by Alan Mackay, Narinder Tamber, Kerry Fenwick, et al.Marjan Iravani, Anita Grigoriadis, Tim Dexter, Christopher Lord, Jorge Reis-Filho, Alan Ashworth posted to breast_cancer cell_line copy-number gene_expression integration by jfr on 2009-04-14 11:22:52 as along with 1 person Zephyrus
	Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays. [My Copy] BMC genomics, Vol. 8, No. 1. (2007) by Herbert Auer, David L. Newsom, Norma J. Nowak, et al.Kirk M. McHugh, Sunita Singh, Chack-Yung Y. Yu, Yan Yang, Gail D. Wenger, Julie M. Gastier-Foster, Karl Kornacker posted to copy-number gene_expression integration by jfr on 2009-04-14 10:49:53 as along with 1 person and 1 group shikin Bioinformatics
	Solutions for data integration in functional genomics: a critical assessment and case study. [My Copy] Briefings in bioinformatics, Vol. 9, No. 6. (1 November 2008), pp. 532-544. by Damian Smedley, Morris A. Swertz, Katy Wolstencroft, et al.Glenn Proctor, Michael Zouberakis, Jonathan Bard, John M. Hancock, Paul Schofield posted to integration software web_services by jfr on 2009-03-30 14:43:47 as along with 5 people dullhunk daforerog guhjy allysonlister Cortel
	Integrative biology a strategy for systems biomedicine [My Copy] Nature Reviews Genetics, Vol. 10, No. 1., pp. 64-68. by Edison T. Liu posted to comment integration systems_biology by jfr on 2009-03-23 15:32:29 as along with 4 people raiyar guhjy pengchy reyez
	Data curation + process curation=data integration + science [My Copy] Brief Bioinform, Vol. 9, No. 6. (1 November 2008), pp. 506-517. by Carole Goble, Robert Stevens, Duncan Hull, Katy Wolstencroft, Rodrigo Lopez posted to data_curation database integration by jfr on 2009-03-18 15:13:27 as along with 12 people and 1 group abhishek_tiwari fgibson thegoose lmichan sobolevnrm ml115 dullhunk nuin Cortel kshameer renatomilani druvus baker-group
	Integrative genomic data mining for discovery of potential blood-borne biomarkers for early diagnosis of cancer. [My Copy] PLoS ONE, Vol. 3, No. 11. (2008) by Y. Yang, L. K. Iyer, S. J. Adelstein, A. I. Kassis posted to biomarker integration meta-analysis oncomine by jfr on 2009-03-10 16:33:48 as along with 3 people ajaymalik wimufi preeti75
	Genome-wide functional synergy between amplified and mutated genes in human breast cancer. [My Copy] Cancer research, Vol. 68, No. 22. (15 November 2008), pp. 9532-9540. by Y. Nikolsky, E. Sviridov, J. Yao, et al.D. Dosymbekov, V. Ustyansky, V. Kaznacheev, Z. Dezso, L. Mulvey, L. E. Macconaill, W. Winckler, T. Serebryiskaya, T. Nikolskaya, K. Polyak posted to breast_cancer copy-number gene_expression integration mutation by jfr on 2009-02-25 17:59:21 as along with 4 people and 2 groups shikin ipark-kaist chrisamiller Zephyrus GeneGo Breast Cancer Reading Club
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to copy-number gene_expression glioblastoma integration methylation pathway by jfr on 2009-02-20 14:32:28 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes [My Copy] BMC Bioinformatics, Vol. 9 (07 October 2008), 422. by Raj Chari, Bradley P. Coe, Craig Wedseltoft, et al.Marie Benetti, Ian M. Wilson, Emily A. Vucic, Calum Macaulay, Raymond T. Ng, Wan L. Lam posted to copy-number gene_expression integration software by jfr on 2009-02-18 14:34:43 as along with 5 people wimufi guhjy mitko operon pengchy
	Microarray-based genomic profiling reveals novel genomic aberrations in follicular lymphoma which associate with patient survival and gene expression status [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 39-54. by Carsten Schwaenen, Andreas Viardot, Hilmar Berger, et al.Thomas F. E. Barth, Stefan Bentink, Hartmut Döhner, Martina Enz, Alfred C. Feller, Martin-Leo Hansmann, Michael Hummel, Hans A. Kestler, Wolfram Klapper, Markus Kreuz, Dido Lenze, Markus Loeffler, Peter Möller, Hans-Konrad Müller-Hermelink, German Ott, Maciej Rosolowski, Andreas Rosenwald, Sandra Ruf, Reiner Siebert, Rainer Spang, Harald Stein, Lorenz Truemper, Peter Lichter, Martin Bentz, Swen Wessendorf, For posted to copy-number gene_expression integration lymphoma survival by jfr on 2009-01-29 11:07:46 as along with 1 person oelemento
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to breast_cancer integration network regulation tbfs by jfr on 2009-01-13 10:37:25 as along with 5 people Zephyrus Borelli druvus xili03 pengchy
	Integrative analysis of RUNX1 downstream pathways and target genes [My Copy] BMC Genomics, Vol. 9 (31 July 2008), 363. by Joelle Michaud, Ken M. Simpson, Robert Escher, et al.Karine Buchet-Poyau, Tim Beissbarth, Catherine Carmichael, Matthew E. Ritchie, Frederic Schutz, Ping Cannon, Marjorie Liu, Xiaofeng Shen, Yoshiaki Ito, Wendy H. Raskind, Marshall S. Horwitz, Motomi Osato, David R. Turner, Terence P. Speed, Maria Kavallaris, Gordon K. Smyth, Hamish S. Scott posted to integration leukemia pathway_analysis by jfr on 2009-01-10 11:20:28 as
	GenMiner: Mining non-redundant association rules from integrated gene expression data and annotations. [My Copy] Bioinformatics (Oxford, England) (17 September 2008) by Ricardo Martinez, Nicolas Pasquier, Claude Pasquier posted to annotation gene_expression integration by jfr on 2009-01-09 13:30:24 as along with 5 people Zephyrus sg45653 guhjy barriot druvus
	A prognostic model for the combined analysis of gene expression profiling in hepatocellular carcinoma. [My Copy] Bioinformation, Vol. 2, No. 9. (2008), pp. 395-400. by Z. C. Benny, L. J. Jack, W. Nathalie, et al.Y. Winnie, L. B. Paul, M. S. Tony, C. T. Anthony posted to classification copy-number gene_expression integration by jfr on 2009-01-09 11:35:35 as
	From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells. [My Copy] BMC bioinformatics, Vol. 9 Suppl 9 (2008) by M. G. Dozmorov, K. D. Kyker, P. J. Hauser, et al.R. Saban, D. D. Buethe, I. Dozmorov, M. B. Centola, D. J. Culkin, R. E. Hurst posted to ecm integration by jfr on 2009-01-08 15:48:57 as
	Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2491-2497. by Antonio Reverter, Eva K. F. Chan posted to integration network by jfr on 2009-01-08 15:19:39 as along with 3 people sotacam ggallone barriot
	High-resolution characterization of the pancreatic adenocarcinoma genome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 24. (15 June 2004), pp. 9067-9072. by Andrew J. Aguirre, Cameron Brennan, Gerald Bailey, et al.Raktim Sinha, Bin Feng, Christopher Leo, Yunyu Zhang, Jean Zhang, Joseph D. Gans, Nabeel Bardeesy, Craig Cauwels, Carlos Cordon-Cardo, Mark S. Redston, Ronald A. Depinho, Lynda Chin posted to array-cgh gene_expression integration by jfr on 2009-01-08 13:22:28 as along with 4 people stharward rdiaz OscarRueda frohike
	Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression. [My Copy] Biometrics (12 May 2008) by Wessel N N. van Wieringen, Mark A A. van de Wiel posted to gene_expression integration methodology copy-number by jfr on 2009-01-07 13:43:36 as along with 3 people sameersoi rdiaz Zephyrus
	Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896. by Hyunju Lee, Sek W. Kong, Peter J. Park posted to gene_expression integration copy-number by jfr on 2009-01-07 11:33:23 as along with 9 people yina rdiaz Zephyrus jcaddy ealloza barriot ptrobajo frohike srp33
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to copy-number gene_expression integration by jfr on 2008-11-28 13:44:40 as along with 7 people dolchan zufar rdiaz tvanwezel imina ealloza frohike
	Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression. [My Copy] Gut, Vol. 58, No. 1. (12 January 2009), pp. 79-89. by Beatriz Carvalho, Cindy Postma, Sandra Mongera, et al.Erik Hopmans, Sharon Diskin, Mark A. A. van de Wiel, Wim van Criekinge, Olivier Thas, Anja Matthäi, Miguel A. A. Cuesta, Jochim, Mikael, Evelin Schröck, Bauke Ylstra, Gerrit A. A. Meijer posted to 20q array-cgh colon_cancer crc_bib gene_expression integration by jfr on 2008-11-26 17:48:39 as
	Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 42. (21 October 2008), pp. 16224-16229. by R. J. Leary, J. C. Lin, J. Cummins, et al.S. Boca, L. D. Wood, D. W. Parsons, S. Jones, T. Sjöblom, B. H. Park, R. Parsons, J. Willis, D. Dawson, J. K. Willson, T. Nikolskaya, Y. Nikolsky, L. Kopelovich, N. Papadopoulos, L. A. Pennacchio, T. L. Wang, S. D. Markowitz, G. Parmigiani, K. W. Kinzler, B. Vogelstein, V. E. Velculescu posted to breast_cancer colon_cancer copy-number gene_expression integration mutation by jfr on 2008-11-26 17:38:57 as along with 3 people and 2 groups Zephyrus wimufi songpku Roswell Cancer Crosstalk Breast Cancer Reading Club
	Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression [My Copy] Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 55-68. by Marie de Tayrac, Amandine Etcheverry, Marc Aubry, et al.Stephan Saïkali, Abderrahmane Hamlat, Veronique Quillien, André Le Treut, Marie-Dominique Galibert, Jean Mosser posted to copy-number gene_expression integration by jfr on 2008-11-26 15:11:25 as along with 6 people and 1 group burak oelemento chrisamiller Zephyrus rdiaz srp33 Roswell Cancer Crosstalk
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to gene_expression integration network by jfr on 2008-11-26 11:46:53 as along with 7 people chad_davis guhjy zwang barriot druvus zimbo1 grahamc
	Combining transcriptional datasets using the generalized singular value decomposition [My Copy] BMC Bioinformatics, Vol. 9 (08 August 2008), 335. by Andreas W. Schreiber, Neil J. Shirley, Rachel A. Burton, Geoffrey B. Fincher posted to integration microarray_analysis by jfr on 2008-11-11 13:14:02 as along with 5 people lptolik rmk GeeSharpMinor shigepong dansullivanblk
	Robust and efficient identification of biomarkers by classifying features on graphs [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2023-2029. by Taehyun Hwang, Hugues Sicotte, Ze Tian, et al.Baolin Wu, Jean-Pierre Kocher, Dennis A. Wigle, Vipin Kumar, Rui Kuang posted to classification graphs integration network by jfr on 2008-11-10 16:51:57 as along with 10 people mdharsee frohike VGreiff guhjy ihpark nuin GeeSharpMinor mitko AbnerCYH sg45653
	Chromosomal aberrations and gene expression profiles in non-small cell lung cancer. [My Copy] Lung cancer (Amsterdam, Netherlands), Vol. 56, No. 2. (May 2007), pp. 175-184. by E. Dehan, A. Ben-Dor, W. Liao, et al.D. Lipson, H. Frimer, S. Rienstein, D. Simansky, M. Krupsky, P. Yaron, E. Friedman, G. Rechavi, M. Perlman, A. Aviram-Goldring, S. Izraeli, M. Bittner, Z. Yakhini, N. Kaminski posted to copy-number gene_expression integration lung_cancer by jfr on 2008-11-10 15:33:26 as
	Molecular subtypes of diffuse large B-cell lymphoma arise by distinct genetic pathways [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13520-13525. by Georg Lenz, George W. Wright, Tolga N. C. Emre, et al.Holger Kohlhammer, Sandeep S. Dave, Eric R. Davis, Shannon Carty, Lloyd T. Lam, A. L. Shaffer, Wenming Xiao, John Powell, Andreas Rosenwald, German Ott, Hans K. Muller-Hermelink, Randy D. Gascoyne, Joseph M. Connors, Elias Campo, Elaine S. Jaffe, Jan Delabie, Erlend B. Smeland, Lisa M. Rimsza, Richard I. Fisher, Dennis D. Weisenburger, Wing C. Chan, Louis M. Staudt posted to array-cgh gene_expression integration lymphoma subtypes by jfr on 2008-11-05 09:24:58 as along with 1 person oelemento
	Improved breast cancer prognosis through the combination of clinical and genetic markers. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 1. (1 January 2007), pp. 30-37. by Yijun Sun, Steve Goodison, Jian Li, Li Liu, William Farmerie posted to breast_cancer integration by jfr on 2008-11-04 12:07:00 as along with 2 people windman83 srp33
	Combining results of microarray experiments: a rank aggregation approach. [My Copy] Statistical applications in genetics and molecular biology, Vol. 5 (2006) by R. P. DeConde, S. Hawley, S. Falcon, N. Clegg, B. Knudsen, R. Etzioni posted to integration by jfr on 2008-10-08 16:56:24 as
	Integrating biological data - the Distributed Annotation System [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 8. (22 July 2008), S3. by Andrew Jenkinson, Mario Albrecht, Ewan Birney, et al.Hagen Blankenburg, Thomas Down, Robert Finn, Henning Hermjakob, Tim Hubbard, Rafael Jimenez, Philip Jones, Andreas Kahari, Eugene Kulesha, Jose Macias, Gabrielle Reeves, Andreas Prlic posted to annotation integration software by jfr on 2008-10-08 15:11:26 as along with 8 people PabloMarin timhubbard joergkurtwegner niallhaslam druvus guhjy aconesa djkt

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breast_cancer	469
review	341
mirna	334
software	272
classification	269
colon_cancer	227
gene_expression	169
methodology	169
copy-number	155
network	148
integration	133
microarray_technology	133
bioinformatics	121
clustering	119
feature_selection	105
meta-analysis	94
affy	85
database	81
therapy	80
mirna_target	74
array-cgh	69
crc_bib	69
gene_set_analysis	67
low_level	66
regulation	66
systems_biology	63
pathway_analysis	60
rt-pcr	60
genomics	59
subtypes	57
annotation	56
snp-arrays	56
comment	52
quality_control	48
normalization	44
metastasis	43
mutations	43
ffpe	41
prognosis	41
deep_sequencing	40
estrogen	40
microarray_analysis	40
proteomics	38
bioconductor	37
cancer	37
statistics	37
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
class_discovery	28
r	28
tamoxifen	28
mutation	27
standards	27
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
ovarian_cancer	21
model	20
survival_analysis	20
tfbs	20
p53	19
treatment	19
functional_analysis	18
kras	18
platform_comparison	18
chip-chip	16
evaluation	16
illumina	16
jfrbib04-09	16
multiple_testing	16
stem_cell	16
technology	16
antisense	15
biomarker	15
module_detection	15
nmf	15
text-mining	15
basal_subtype	14
erbb	14
sequencing	14
bio_signature	13
reproducible_research	13
rna_quality	13
stageii	13
staging	13
tma	13
cnv	12
egfr	12
gene_ontology	12
genotyping	12
lung_cancer	12
maqc	12
marker	12
cell_line	11
drug_discovery	11
loh	11
missing_values	11
proliferation	11
protocol	11
semantic_web	11
control_genes	10
disease_genes	10
gene_lists	10
genome_browser	10
pten	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
mirna_regulation	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
personalized_medicine	8
sample_size	8
tgfb	8
time-course	8
18q_loh	7
lymphoma	7
myc	7
tiling_array	7
validation	7
community	6
correlation	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
nci60	6
non-coding	6
ontology	6
plos_rules	6
promoters	6
read_mapping	6
serum	6
stem	6
chemotherapy	5
cin	5
cross-platform	5
functional_genomics	5
gene_pairs	5
grid_computing	5
gwas	5
her2	5
machine_learning	5
mir21	5
plos_primer	5
plos_start	5
radiation	5
trial	5
biobank	4
data_curation	4
er	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
pooling	4
prioritization	4
prostate_cancer	4
public_data	4
resource	4
survival	4
web_services	4
agilent	3
apc	3
bim	3
biomarkers	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
glioblastoma	3
hapmap	3
interaction	3
loops	3
mage	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
triple_negative	3
tutorial	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cell_cycle	2
cetuximab	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
flow_cytometry	2
gene_fusion	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
luminal_subtype	2
lymphocytes	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_resource	2
web_server	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
cervical_cancer	1
circulating_tumor_cells	1
cloud_computing	1
clusterin	1
compression	1
concordance	1
cross-species	1
cross-study	1
dasl	1
dcc	1
dfs	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
dye_bias	1
early-stage	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fantom	1
fgfr2	1
fish	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
gene_networks	1
genetics	1
genome_assembly	1
genoty	1
graph_approach	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
latex	1
low-level	1
markup	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
model-based	1
modules	1
mrna-seq	1
myb	1
neural_networks	1
news	1
ngs	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
perturbation	1
pilot_study	1
plasma	1
power_analysis	1
prb	1
pre-post	1
python	1
randomization	1
ranked_lists	1
rb	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
single_cell	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
target_discovery	1
taxane	1
tcga	1
tissue_origin	1
translation	1
translocation	1
ucs	1
wiki	1

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