jfr's methylation [32 articles] Export

Recent papers added to jfr's library classified by the tag methylation. You can also see everyone's methylation.

	Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4828-4833. by Kimberly D. Siegmund, Paul Marjoram, Yen-Jung J. Woo, Simon Tavaré, Darryl Shibata posted to stem_cells methylation colon_cancer by jfr on 2009-11-02 16:34:48 as along with 3 people ajaymalik myzhang rdiaz
	Epigenetic-genetic interactions in the APC/WNT, RAS/RAF, and P53 pathways in colorectal carcinoma. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 9. (1 May 2008), pp. 2560-2569. by Y. Suehiro, C. W. Wong, L. R. Chirieac, et al.Y. Kondo, L. Shen, C. R. Webb, Y. W. Chan, A. S. Chan, T. L. Chan, T. T. Wu, A. Rashid, Y. Hamanaka, Y. Hinoda, R. L. Shannon, X. Wang, J. Morris, J. P. Issa, S. T. Yuen, S. Y. Leung, S. R. Hamilton posted to colon_cancer methylation mutation by jfr on 2009-07-10 16:22:05 as
	The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores [My Copy] Nat Genet, Vol. 41, No. 2. (18 February 2009), pp. 178-186. by Rafael A. Irizarry, Christine Ladd-Acosta, Bo Wen, et al.Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster, Hong Ji, James B. Potash, Sarven Sabunciyan, Andrew P. Feinberg posted to colon_cancer methylation by jfr on 2009-04-15 14:03:54 as along with 5 people saravana suizifish felsani wpuszyk misonneh
	MGMT and MLH1 promoter methylation versus APC, KRAS and BRAF gene mutations in colorectal cancer: indications for distinct pathways and sequence of events. [My Copy] Annals of oncology : official journal of the European Society for Medical Oncology / ESMO (22 January 2009) by S de Vogel, M P P. Weijenberg, J G G. Herman, et al.K A D A. Wouters, A F P M F. de Goeij, P A A. van den Brandt, A P P. de Bruïne, M van Engeland posted to apc colon_cancer kras methylation by jfr on 2009-04-14 11:54:23 as
	Comprehensive biostatistical analysis of CpG island methylator phenotype in colorectal cancer using a large population-based sample. [My Copy] PLoS ONE, Vol. 3, No. 11. (2008) by K. Nosho, N. Irahara, K. Shima, et al.S. Kure, G. J. Kirkner, E. S. Schernhammer, A. Hazra, D. J. Hunter, J. Quackenbush, D. Spiegelman, E. L. Giovannucci, C. S. Fuchs, S. Ogino posted to colon_cancer methylation by jfr on 2009-03-13 10:40:48 as
	Hypermethylator phenotype in sporadic colon cancer: study on a population-based series of 582 cases. [My Copy] Cancer research, Vol. 68, No. 20. (15 October 2008), pp. 8541-8546. by L. Barault, C. Charon-Barra, V. Jooste, et al.M. F. de la Vega, L. Martin, P. Roignot, P. Rat, A. M. Bouvier, P. Laurent-Puig, J. Faivre, C. Chapusot, F. Piard posted to colon_cancer methylation by jfr on 2009-02-20 17:29:59 as
	Comprehensive genomic characterization defines human glioblastoma genes and core pathways [My Copy] Nature, Vol. 455, No. 7216. (04 September 2008), pp. 1061-1068. posted to copy-number gene_expression glioblastoma integration methylation pathway by jfr on 2009-02-20 14:32:28 as along with 24 people and 2 groups ealloza iskathy srp33 dolchan ajbattle aezrin myzhang chrisamiller fenghezi jessopher zufar wimufi jbhiatt frohike huiminC renatomilani ptrobajo cchand Zephyrus nuin brianb oelemento shikin shigepong Roswell Cancer Crosstalk GeneGo
	DNA methylation changes in ovarian cancer are cumulative with disease progression and identify tumor stage. [My Copy] BMC medical genomics, Vol. 1 (2008) by G. S. Watts, B. W. Futscher, N. Holtan, K. Degeest, F. E. Domann, S. L. Rose posted to methylation ovarian_cancer staging by jfr on 2009-01-29 12:09:24 as
	Colon cancer: it's CIN or CIMP. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5939-5940. by J. P. Issa posted to colon_cancer comment copy-number methylation by jfr on 2009-01-10 16:41:21 as
	CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 6005-6013. by Y. W. Cheng, H. Pincas, M. D. Bacolod, et al.G. Schemmann, S. F. Giardina, J. Huang, S. Barral, K. Idrees, S. A. Khan, Z. Zeng, S. Rosenberg, D. A. Notterman, J. Ott, P. Paty, F. Barany posted to colon_cancer copy-number methylation by jfr on 2009-01-10 16:40:23 as along with 2 people huiminC oelemento
	MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment. [My Copy] Genome research, Vol. 18, No. 10. (October 2008), pp. 1652-1659. by M. Pelizzola, Y. Koga, A. E. Urban, et al.M. Krauthammer, S. Weissman, R. Halaban, A. M. Molinaro posted to methylation by jfr on 2008-11-17 16:13:28 as along with 1 person rschulz
	A microRNA DNA methylation signature for human cancer metastasis. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (3 September 2008) by Amaia Lujambio, George A A. Calin, Alberto Villanueva, et al.Santiago Ropero, Montserrat Sánchez-Céspedes, David Blanco, Luis M M. Montuenga, Simona Rossi, Milena S S. Nicoloso, William J J. Faller, William M M. Gallagher, Suzanne A A. Eccles, Carlo M M. Croce, Manel Esteller posted to metastasis methylation mirna by jfr on 2008-11-07 09:48:17 as along with 6 people and 2 groups guhjy tonamswish frohike nuin Zephyrus giovenko microRNA Roswell Cancer Crosstalk
	Genome-scale DNA methylation maps of pluripotent and differentiated cells [My Copy] Nature, Vol. 454, No. 7205. (06 July 2008), pp. 766-770. by Alexander Meissner, Tarjei S. Mikkelsen, Hongcang Gu, et al.Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E. Bernstein, Chad Nusbaum, David B. Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S. Lander posted to methylation by jfr on 2008-10-30 15:51:44 as along with 14 people and 1 group aprickett saravana jmstat mmartin christoffpale guhjy rschulz jernst mrochman gdb jasonflannick inesdesantiago djkt wsjames Oxford Virology
	Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells. [My Copy] Cancer research, Vol. 68, No. 14. (15 July 2008), pp. 5753-5759. by K. M. McGarvey, L. Van Neste, L. Cope, et al.J. E. Ohm, J. G. Herman, W. Van Criekinge, K. E. Schuebel, S. B. Baylin posted to colon_cancer methylation by jfr on 2008-09-29 16:14:44 as
	Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping [My Copy] Nucl. Acids Res., Vol. 36, No. 10. (1 June 2008), e55. by Christoph Bock, Jorn Walter, Martina Paulsen, Thomas Lengauer posted to methylation by jfr on 2008-09-24 14:23:10 as along with 1 person guhjy
	DNA methylation landscapes: provocative insights from epigenomics. [My Copy] Nature reviews. Genetics (8 May 2008) by Miho M M. Suzuki, Adrian Bird posted to methylation review by jfr on 2008-09-04 10:47:11 as along with 8 people tomhebbron misonneh rschulz bootsy dchughes djkt guhjy inesdesantiago
	Convergence of Mutation and Epigenetic Alterations Identifies Common Genes in Cancer That Predict for Poor Prognosis [My Copy] PLoS Med, Vol. 5, No. 5. (27 May 2008), e114. by Timothy A. Chan, Sabine Glockner, Joo M. Yi, et al.Wei Chen, Leander Van Neste, Leslie Cope, James G. Herman, Victor Velculescu, Kornel E. Schuebel, Nita Ahuja, Stephen B. Baylin posted to can_genes methylation mutations by jfr on 2008-08-04 14:41:19 as along with 3 people and 1 group frohike Zephyrus misonneh Roswell Cancer Crosstalk
	Identification and validation of colorectal neoplasia-specific methylation markers for accurate classification of disease. [My Copy] Molecular cancer research : MCR, Vol. 5, No. 2. (February 2007), pp. 153-163. by F. Model, N. Osborn, D. Ahlquist, et al.R. Gruetzmann, B. Molnar, F. Sipos, O. Galamb, C. Pilarsky, H. D. Saeger, Z. Tulassay, K. Hale, S. Mooney, J. Lograsso, P. Adorjan, R. Lesche, A. Dessauer, J. Kleiber, B. Porstmann, A. Sledziewski, C. Lofton-Day posted to colon_cancer methylation by jfr on 2008-07-17 14:10:19 as
	MethCancerDB [ndash] aberrant DNA methylation in human cancer [My Copy] British Journal of Cancer, Vol. aop, No. current. (05 February 2008) by M. Lauss, I. Visne, A. Weinhaeusel, K. Vierlinger, C. Noehammer, A. Kriegner posted to database methylation by jfr on 2008-06-20 16:47:56 as
	Genome-wide promoter analysis uncovers portions of the cancer methylome. [My Copy] Cancer research, Vol. 68, No. 8. (15 April 2008), pp. 2661-2670. by M. O. Hoque, M. S. Kim, K. L. Ostrow, et al.J. Liu, G. B. Wisman, H. L. Park, M. L. Poeta, C. Jeronimo, R. Henrique, A. Lendvai, E. Schuuring, S. Begum, E. Rosenbaum, M. Ongenaert, K. Yamashita, J. Califano, W. Westra, A. G. van der Zee, W. Van Criekinge, D. Sidransky posted to methylation by jfr on 2008-06-17 18:00:18 as
	Comprehensive high-throughput arrays for relative methylation (CHARM). [My Copy] Genome research, Vol. 18, No. 5. (May 2008), pp. 780-790. by R. A. Irizarry, C. Ladd-Acosta, B. Carvalho, et al.H. Wu, S. A. Brandenburg, J. A. Jeddeloh, B. Wen, A. P. Feinberg posted to methylation by jfr on 2008-06-17 11:56:53 as along with 3 people huiminC oelemento guhjy
	Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines. [My Copy] Genome research, Vol. 18, No. 5. (May 2008), pp. 791-801. by Y. J. Shann, C. Cheng, C. H. Chiao, D. T. Chen, P. H. Li, M. T. Hsu posted to methylation by jfr on 2008-06-17 11:55:48 as along with 2 people and 1 group Zephyrus inesdesantiago Breast Cancer Reading Club
	Relationship between point gene mutation, chromosomal abnormality, and tumour suppressor gene methylation status in colorectal adenomas. [My Copy] J Pathol (10 August 2006) by H Judson, A Stewart, A Leslie, et al.Nr Pratt, DU Baty, Rjc Steele, Fa Carey posted to colon_cancer copy-number methylation mutations by jfr on 2008-03-17 16:06:36 as along with 1 person and 1 group ealloza BioinfoCIPF
	18q loss of heterozygosity in microsatellite stable colorectal cancer is correlated positively with CpG island methylator phenotype-negative (CIMP-negative) and inversely with CIMP-low and CIMP-high [My Copy] BMC Cancer, Vol. 7 (02 May 2007), 72. by Shuji Ogino, Takako Kawasaki, Gregory J. Kirkner, Mutsuko Ohnishi, Charles S. Fuchs posted to 18q_loh colon_cancer methylation by jfr on 2008-03-17 16:02:42 as
	Chromosomal instability correlates with genome-wide DNA demethylation in human primary colorectal cancers. [My Copy] Cancer Res, Vol. 66, No. 17. (1 September 2006), pp. 8462-9468. by J. Rodriguez, J. Frigola, E. Vendrell, et al.R. A. Risques, M. F. Fraga, C. Morales, V. Moreno, M. Esteller, G. Capellà, M. Ribas, M. A. Peinado posted to colon_cancer methylation by jfr on 2008-03-17 14:52:13 as
	Genome-wide combination profiling of copy number and methylation offers an approach for deciphering misregulation and development in cancer cells. [My Copy] Gene, Vol. 407, No. 1-2. (15 January 2008), pp. 139-147. by J. J. Park, J. K. Kang, S. Hong, et al.E. S. Ryu, J. I. Kim, J. H. Lee, J. S. Seo posted to copy-number integration methylation by jfr on 2007-12-19 09:26:11 as
	High-throughput methylation profiling by MCA coupled to CpG island microarray. [My Copy] Genome Res (4 September 2007) by Marcos R H R. Estécio, Pearlly S S. Yan, Ashraf E K E. Ibrahim, et al.Carmen S S. Tellez, Lanlan Shen, Tim H-M H. Huang, Jean-Pierre J P. Issa posted to methylation microarray_technology by jfr on 2007-12-07 15:03:47 as along with 2 people kaarsinogen epigenetics
	Comparing the DNA hypermethylome with gene mutations in human colorectal cancer. [My Copy] PLoS Genet, Vol. 3, No. 9. (21 September 2007), pp. 1709-1723. by K. E. Schuebel, W. Chen, L. Cope, et al.S. C. Glöckner, H. Suzuki, J. M. Yi, T. A. Chan, L. Van Neste, W. Van Criekinge, S. van den Bosch, M. van Engeland, A. H. Ting, K. Jair, W. Yu, M. Toyota, K. Imai, N. Ahuja, J. G. Herman, S. B. Baylin posted to colon_cancer methylation by jfr on 2007-12-07 13:10:48 as
	DNA-methylation of the homeodomain transcription factor PITX2 reliably predicts risk of distant disease recurrence in tamoxifen-treated, node-negative breast cancer patients--Technical and clinical validation in a multi-centre setting in collaboration with the European Organisation for Research and Treatment of Cancer (EORTC) PathoBiology group. [My Copy] Eur J Cancer, Vol. 43, No. 11. (July 2007), pp. 1679-1686. by S. Maier, I. Nimmrich, T. Koenig, et al.S. Eppenberger-Castori, I. Bohlmann, A. Paradiso, F. Spyratos, C. Thomssen, V. Mueller, J. Nährig, F. Schittulli, R. Kates, R. Lesche, I. Schwope, A. Kluth, A. Marx, J. W. Martens, J. A. Foekens, M. Schmitt, N. Harbeck, posted to breast_cancer methylation tamoxifen by jfr on 2007-11-26 10:19:01 as
	A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. [My Copy] PLoS Med, Vol. 3, No. 12. (December 2006) by D. S. Shames, L. Girard, B. Gao, et al.M. Sato, C. M. Lewis, N. Shivapurkar, A. Jiang, C. M. Perou, Y. H. Kim, J. R. Pollack, K. M. Fong, C. L. Lam, M. Wong, Y. Shyr, R. Nanda, O. I. Olopade, W. Gerald, D. M. Euhus, J. W. Shay, A. F. Gazdar, J. D. Minna posted to methylation by jfr on 2007-05-10 16:56:30 as along with 2 people epigenetics blackm0k
	BRCA1 promoter methylation in sporadic breast tumors: relationship to gene expression profiles [My Copy] Breast Cancer Research and Treatment, Vol. 91, No. 2. (May 2005), pp. 179-186. by Evan Matros, Zhigang Wang, Gabriela Lodeiro, Alexander Miron, J. Iglehart, Andrea Richardson posted to methylation breast_cancer brca by jfr on 2007-01-29 16:02:18 as
	Association of breast cancer DNA methylation profiles with hormone receptor status and response to tamoxifen. [My Copy] Cancer Res, Vol. 64, No. 11. (1 June 2004), pp. 3807-3813. by M. Widschwendter, K. D. Siegmund, H. M. Müller, et al.H. Fiegl, C. Marth, E. Müller-Holzner, P. A. Jones, P. W. Laird posted to tamoxifen methylation breast_cancer by jfr on 2007-01-17 15:51:50 as

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breast_cancer	474
review	345
mirna	341
software	275
classification	272
colon_cancer	230
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methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
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affy	86
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array-cgh	69
crc_bib	69
gene_set_analysis	69
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regulation	66
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pathway_analysis	60
genomics	59
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annotation	57
snp-arrays	57
comment	52
quality_control	48
metastasis	46
normalization	46
mutations	43
deep_sequencing	42
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prognosis	41
estrogen	40
microarray_analysis	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
alternative_splicing	35
markers	35
progression	35
protein_interaction	35
fdr	34
snp	33
methylation	32
r	30
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tamoxifen	28
exon_arrays	25
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can_genes	8
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jfr's methylation [32 articles] Export

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