jfr's microarray_analysis [40 articles] Export

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	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted to web_services software microarray_analysis bioconductor by jfr on 2009-11-15 15:57:23 as along with 8 people and 1 group guhjy dswan djkt chrisamiller renatomilani phoenixzxl natstreet druvus Bioinformatics
	Mining subspace clusters from DNA microarray data using large itemset techniques. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 5. (May 2009), pp. 745-768. by Ye-In I. Chang, Jiun-Rung R. Chen, Yueh-Chi C. Tsai posted to microarray_analysis clustering by jfr on 2009-11-10 17:38:09 as along with 1 person guhjy
	A Regularized Method for Selecting Nested Groups of Relevant Genes from Microarray Data [My Copy] (10 Sep 2008) by Christine De Mol, Sofia Mosci, Magali Traskine, Alessandro Verri posted to microarray_analysis feature_selection by jfr on 2009-11-10 17:37:08 as
	Adaptable gene-specific dye bias correction for two-channel DNA microarrays. [My Copy] Molecular systems biology, Vol. 5 (28 April 2009) by Thanasis Margaritis, Philip Lijnzaad, Dik van Leenen, et al.Diane Bouwmeester, Patrick Kemmeren, Sander R. van Hooff, Frank C. Holstege posted to two-color microarray_analysis low_level dye_bias bioconductor by jfr on 2009-11-09 11:39:03 as along with 1 person reyez
	Iterative Bayesian Model Averaging: a method for the application of survival analysis to high-dimensional microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by A. Annest, R. E. Bumgarner, A. E. Raftery, K. Y. Yeung posted to bayesian microarray_analysis survival_analysis by jfr on 2009-07-09 13:01:54 as along with 4 people and 1 group rdiaz fpattyn neils pkonings Bioinformatics
	Microarray background correction: maximum likelihood estimation for the normal-exponential convolution [My Copy] Biostat (8 December 2008), kxn042. by Jeremy D. Silver, Matthew E. Ritchie, Gordon K. Smyth posted to low_level microarray_analysis two-color by jfr on 2009-06-16 16:24:31 as along with 4 people rdiaz guhjy flips renatomilani
	Network-based inference of cancer progression from microarray data. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 6, No. 2. (n 2009), pp. 200-212. by Y. Park, S. Shackney, R. Schwartz posted to microarray_analysis network progression by jfr on 2009-06-09 17:10:23 as
	Repeatability of published microarray gene expression analyses. [My Copy] Nature genetics, Vol. 41, No. 2. (28 February 2009), pp. 149-155. by John P. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedín C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted to microarray_analysis reproducible_research by jfr on 2009-04-15 13:43:07 as along with 21 people and 1 group hzoltan heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows Roswell Cancer Crosstalk
	Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis. [My Copy] Source code for biology and medicine, Vol. 3 (2008) by J. Scaria, A. Sreedharan, Y. F. Chang posted to database lims microarray_analysis software by jfr on 2009-04-07 15:36:08 as
	Regularized gene selection in cancer microarray meta-analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (01 January 2009), 1. by Shuangge Ma, Jian Huang posted to feature_selection meta-analysis microarray_analysis by jfr on 2009-03-30 15:18:52 as along with 9 people and 1 group Zephyrus daforerog lwaldron rdiaz guhjy dswan paszkows taguchi nuin Bioinformatics
	GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Keller, C. Backes, M. Al-Awadhi, et al.A. Gerasch, J. Küntzer, O. Kohlbacher, M. Kaufmann, H. P. Lenhof posted to microarray_analysis software by jfr on 2009-03-24 13:05:53 as along with 7 people and 1 group guhjy nuin dswan renatomilani druvus reyez paszkows Bioinformatics
	CleanEx: new data extraction and merging tools based on MeSH term annotation [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D880-884. by Viviane Praz, Philipp Bucher posted to annotation database microarray_analysis by jfr on 2009-03-24 12:42:42 as along with 4 people lmichan lptolik nuin guhjy
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D868-872. by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna G. Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to database microarray_analysis by jfr on 2009-03-24 12:34:10 as along with 9 people bertelsen ptrobajo daforerog guhjy samfromklamart vkwn Borelli kittipat abizar
	Gene expression profiling in colorectal cancer using microarray technologies: Results and perspectives. [My Copy] Cancer treatment reviews (8 December 2008) by Margherita Nannini, Maria Abbondanza A. Pantaleo, Alessandra Maleddu, Annalisa Astolfi, Serena Formica, Guido Biasco posted to colon_cancer gene_expression microarray_analysis public_data review by jfr on 2009-03-23 14:32:51 as
	EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 493. by G. Barton, J. Abbott, N. Chiba, et al.D. W. Huang, Y. Huang, M. Krznaric, J. Mack Smith, A. Saleem, B. T. Sherman, B. Tiwari, C. Tomlinson, T. Aitman, J. Darlington, L. Game, M. J. E. Sternberg, S. A. Butcher posted to grid_computing microarray_analysis by jfr on 2009-03-16 09:57:33 as along with 11 people gpyle pengchy dullhunk rdiaz guhjy shikin nuin Terkko lptolik GeeSharpMinor dansullivanblk
	Predicting survival from microarray data - a comparative study. [My Copy] Bioinformatics (6 June 2007) by H M M. Bøvelstad, S Nygård, H L L. Størvold, et al.M Aldrin, O Borgan, A Frigessi, O C C. Lingjærde posted to comparison microarray_analysis survival_analysis by jfr on 2009-02-25 18:04:31 as along with 6 people ekotelnikova aviad_work frohike rdiaz shigepong blackm0k
	Statistical challenges in preprocessing in microarray experiments in cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 19. (1 October 2008), pp. 5959-5966. by K. Owzar, W. T. Barry, S. H. Jung, I. Sohn, S. L. George posted to low_level microarray_analysis review by jfr on 2009-01-29 11:05:43 as along with 7 people and 1 group zufar lwaldron Zephyrus rdiaz shikin guhjy winterschlaefer Bioinformatics
	MiMiR--an integrated platform for microarray data sharing, mining and analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Chris Tomlinson, Manjula Thimma, Stelios Alexandrakis, et al.Tito Castillo, Jayne L. Dennis, Anthony Brooks, Thomas Bradley, Carly Turnbull, Ekaterini Blaveri, Geraint Barton, Norie Chiba, Klio Maratou, Pat Soutter, Tim Aitman, Laurence Game posted to database microarray_analysis software by jfr on 2009-01-08 15:37:03 as along with 4 people daforerog rdiaz guhjy GeeSharpMinor
	Key issues in conducting a meta-analysis of gene expression microarray datasets. [My Copy] PLoS medicine, Vol. 5, No. 9. (30 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted to meta-analysis microarray_analysis review by jfr on 2008-12-01 13:08:30 as along with 11 people and 1 group zufar greg frohike lwaldron daforerog Zephyrus shikin druvus guhjy aviad_work ptrobajo Roswell Cancer Crosstalk
	Pathways to the analysis of microarray data. [My Copy] Trends in biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435. by R. Keira Curtis, Matej Oresic, Antonio Vidal-Puig posted to microarray_analysis pathway_analysis review by jfr on 2008-11-28 14:34:14 as along with 11 people and 2 groups bertelsen thomaskelder udivi AlexanderPico saman_vp snuppepuppan textoris Ayest tardigrade ealloza heliopais ConklinLab BioinfoCIPF
	Apparently low reproducibility of true differential expression discoveries in microarray studies. [My Copy] Bioinformatics (Oxford, England) (16 July 2008) by Min Zhang, Chen Yao, Zheng Guo, et al.Jinfeng Zou, Lin Zhang, Hui Xiao, Dong Wang, Da Yang, Xue Gong, Jing Zhu, Yanhui Li, Xia Li posted to gene_expression microarray_analysis by jfr on 2008-11-24 15:30:44 as along with 8 people surajitray Zephyrus VGreiff guhjy renatomilani neils GeeSharpMinor shigepong
	Combining transcriptional datasets using the generalized singular value decomposition [My Copy] BMC Bioinformatics, Vol. 9 (08 August 2008), 335. by Andreas W. Schreiber, Neil J. Shirley, Rachel A. Burton, Geoffrey B. Fincher posted to integration microarray_analysis by jfr on 2008-11-11 13:14:02 as along with 5 people lptolik rmk GeeSharpMinor shigepong dansullivanblk
	A Unified Framework for Finding Differentially Expressed Genes from Microarray Experiments [My Copy] BMC Bioinformatics, Vol. 8 (18 September 2007), 347. by Jahangheer S. Shaik, Mohammed Yeasin posted to feature_selection microarray_analysis by jfr on 2008-11-05 10:51:29 as along with 2 people guhjy renatomilani
	CoPub: a literature-based keyword enrichment tool for microarray data analysis. [My Copy] Nucleic acids research (28 April 2008) by Raoul Frijters, Bart Heupers, Pieter van V. Beek, et al.Maurice Bouwhuis, René van V. Schaik, Jacob de D. Vlieg, Jan Polman, Wynand Alkema posted to database microarray_analysis text-mining by jfr on 2008-11-05 09:44:18 as along with 2 people and 1 group Zephyrus guhjy Roswell Cancer Crosstalk
	Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Alexander E. Ivliev, Peter A. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt posted to database microarray_analysis software by jfr on 2008-11-05 09:43:26 as along with 4 people and 1 group daforerog Zephyrus guhjy zhouyu Roswell Cancer Crosstalk
	Logical analysis of survival data: prognostic survival models by detecting high-degree interactions in right-censored data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by L. P. Kronek, A. Reddy posted to methodology microarray_analysis survival_analysis by jfr on 2008-10-14 18:19:11 as
	Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880. by H. Li, M. Zhan posted to integration microarray_analysis regulation tfbs by jfr on 2008-09-29 14:23:18 as along with 5 people bertelsen TRHvidsten guhjy icecrown ealloza
	Differential variability analysis of gene expression and its application to human diseases. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008) by J. W. Ho, M. Stefani, C. G. dos Remedios, M. A. Charleston posted to gene_interaction gene_pairs methodology microarray_analysis by jfr on 2008-09-26 10:51:27 as along with 2 people GeeSharpMinor guhjy
	A weighted average difference method for detecting differentially expressed genes from microarray data [My Copy] Algorithms for Molecular Biology, Vol. 3 (26 June 2008), 8. by Koji Kadota, Yuji Nakai, Kentaro Shimizu posted to feature_selection microarray_analysis by jfr on 2008-09-24 13:40:15 as along with 4 people and 1 group guhjy heliopais vertikalist beete BTS-PT-AS-CS
	Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. [My Copy] Nucleic acids research (31 May 2008) by Fátima Al-Shahrour, José Carbonell, Pablo Minguez, et al.Stefan Goetz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo posted to microarray_analysis software by jfr on 2008-09-15 16:59:48 as along with 2 people daforerog guhjy
	GEPAS, a web-based tool for microarray data analysis and interpretation [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_2. (1 July 2008), pp. W308-314. by Joaquin Tarraga, Ignacio Medina, Jose Carbonell, et al.Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fatima Al-Shahrour, Susana Vegas-Azcarate, Stefan Goetz, Pablo Escobar, Francisco Garcia-Garcia, Ana Conesa, David Montaner, Joaquin Dopazo posted to microarray_analysis software by jfr on 2008-09-15 12:31:20 as along with 4 people sgoetz rdiaz guhjy GeeSharpMinor
	The properties of high-dimensional data spaces: implications for exploring gene and protein expression data [My Copy] Nat Rev Cancer, Vol. 8, No. 1. (01 January 2008), pp. 37-49. by Robert Clarke, Habtom W. Ressom, Antai Wang, et al.Jianhua Xuan, Minetta C. Liu, Edmund A. Gehan, Yue Wang posted to class_discovery classification feature_selection microarray_analysis review by jfr on 2008-09-04 15:12:28 as along with 17 people and 1 group Zephyrus aviad_work ipark-kaist isimpson Scis0000002 baizhang bertelsen ptrobajo guhjy tmmurali dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
	Microarray-based expression profiling and informatics [My Copy] Current Opinion in Biotechnology In Analytical biotechnology, Vol. 19, No. 1. (February 2008), pp. 26-29. by Richard Simon posted to microarray_analysis review by jfr on 2008-09-04 14:31:46 as along with 4 people rdiaz guhjy dchughes heliopais
	Genome-wide co-expression based prediction of differential expressions. [My Copy] Bioinformatics (15 November 2007) by Yinglei Lai posted to co-expression feature_selection microarray_analysis by jfr on 2008-09-03 11:13:53 as along with 4 people and 1 group guhjy shigepong aubinhon gongScience Integrative_biology_behavior
	M-BISON: microarray-based integration of data sources using networks [My Copy] BMC Bioinformatics, Vol. 9 (25 April 2008), 214. by Bernie J. Daigle, Russ B. Altman posted to feature_selection microarray_analysis by jfr on 2008-06-17 17:20:37 as along with 2 people guhjy frohike
	Automating dChip: toward reproducible sharing of microarray data analysis [My Copy] BMC Bioinformatics, Vol. 9 (08 May 2008), 231. by Cheng Li posted to microarray_analysis reproducible_research by jfr on 2008-06-17 17:18:00 as along with 2 people noushin guhjy
	Empirical Bayes models for multiple probe type microarrays at the probe level. [My Copy] BMC bioinformatics, Vol. 9 (20 March 2008), 156. by Magnus Astrand, Petter Mostad, Mats Rudemo posted to affy feature_selection microarray_analysis by jfr on 2008-06-17 17:00:07 as along with 7 people daforerog bertelsen GeeSharpMinor heliopais ptrobajo guhjy Osorio
	Microarray data mining using landmark gene-guided clustering [My Copy] BMC Bioinformatics, Vol. 9 (11 February 2008), 92. by Pankaj Chopra, Jaewoo Kang, Jiong Yang, Hyungjun Cho, Heenam S. Kim, Min-Goo Lee posted to clustering microarray_analysis by jfr on 2008-06-17 16:55:08 as along with 1 person guhjy
	Unequal group variances in microarray data analyses. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 9. (1 May 2008), pp. 1168-1174. by Meaza Demissie, Barbara Mascialino, Stefano Calza, Yudi Pawitan posted to fdr feature_selection microarray_analysis by jfr on 2008-06-17 16:44:57 as along with 5 people and 1 group GeeSharpMinor dswan guhjy shigepong aviad_work Bioinformatics
	Microarray data analysis and mining approaches [My Copy] Brief Funct Genomic Proteomic (22 January 2008), elm034. by Francesca Cordero, Marco Botta, Raffaele A. Calogero posted to microarray_analysis promoters review by jfr on 2008-04-22 08:23:33 as along with 5 people wowalz akastrin guhjy neveaire fishtank

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breast_cancer	474
review	345
mirna	341
software	275
classification	272
colon_cancer	230
gene_expression	176
methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
clustering	121
bioinformatics	121
feature_selection	106
meta-analysis	97
affy	86
database	81
therapy	80
mirna_target	76
crc_bib	69
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array-cgh	69
regulation	66
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genomics	59
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annotation	57
snp-arrays	57
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mutations	43
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microarray_analysis	40
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statistics	37
bioconductor	37
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markers	35
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r	30
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mutation	28
exon_arrays	25
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pathway	22
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snp_arrays	2
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gene_fusion	2
bcatenin	2
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cdk8	2
permutations	2
tbfs	2
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flow_cytometry	2
in-situ	2
projection	2
letter	2
web_resource	2
ngs	2
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au-rich	1
apoptosis	1
dcc	1
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beads	1
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cross-species	1
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rna-interference	1
latent	1
mir16-1	1
dasl	1
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shrna	1
reproducibility	1
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stem_cells	1
p21	1
dye_bias	1
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met	1
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mir199	1
mir126	1
akt	1
mir449	1
target_discovery	1
funding	1
braf	1
wiki	1

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