jfr's mutations [43 articles] Export

Recent papers added to jfr's library classified by the tag mutations. You can also see everyone's mutations.

	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	Gene expression profiling: canonical molecular changes and clinicopathological features in sporadic colorectal cancers. [My Copy] World journal of gastroenterology : WJG, Vol. 14, No. 43. (21 November 2008), pp. 6662-6672. by J. C. Kim, S. Y. Kim, S. A. Roh, et al.D. H. Cho, D. D. Kim, J. H. Kim, Y. S. Kim posted to colon_cancer gene_expression mutations by jfr on 2009-06-10 13:59:42 as
	Combinatorial patterns of somatic gene mutations in cancer [My Copy] FASEB J., Vol. 22, No. 8. (1 August 2008), pp. 2605-2622. by Chen-Hsiang Yeang, Frank Mccormick, Arnold Levine posted to can_genes cancer gene_interaction model mutations progression by jfr on 2008-11-10 15:35:55 as along with 3 people myzhang srp33 ramensky
	Clinical relevance of KRAS mutation detection in metastatic colorectal cancer treated by Cetuximab plus chemotherapy [My Copy] British Journal of Cancer, Vol. aop, No. current. (20 March 2007) by F. Di Fiore, F. Blanchard, F. Charbonnier, et al.F. Le Pessot, A. Lamy, M. P. Galais, L. Bastit, A. Killian, R. Sesboue, J. J. Tuech, A. M. Queuniet, B. Paillot, J. C. Sabourin, F. Michot, P. Michel, T. Frebourg posted to colon_cancer kras mutations therapy by jfr on 2008-09-29 14:19:08 as
	Dynamics of cancer progression [My Copy] Nat Rev Cancer, Vol. 4, No. 3. (March 2004), pp. 197-205. by Franziska Michor, Yoh Iwasa, Martin A. Nowak posted to model mutations progression by jfr on 2008-09-16 08:58:53 as along with 4 people and 2 groups chihchun_chen mattjb Koh oelemento ComplexAdaptiveSystems DSTO-CAS
	Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype [My Copy] Nature, Vol. 453, No. 7198. (25 May 2008), pp. 1112-1116. by Helene R. McMurray, Erik R. Sampson, George Compitello, et al.Conan Kinsey, Laurel Newman, Bradley Smith, Shaw-Ree Chen, Lev Klebanov, Peter Salzman, Andrei Yakovlev, Hartmut Land posted to mutations by jfr on 2008-09-15 12:49:24 as along with 5 people myzhang ipark-kaist catcremona guhjy fpattyn
	Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18654-18659. by Lanlan Shen, Minoru Toyota, Yutaka Kondo, et al.E. Lin, Li Zhang, Yi Guo, Natalie S. Hernandez, Xinli Chen, Saira Ahmed, Kazuo Konishi, Stanley R. Hamilton, Jean-Pierre J. Issa posted to colon_cancer integration mutations subtypes by jfr on 2008-09-03 14:59:52 as along with 1 person epigenetics
	Progression and tumor heterogeneity analysis in early rectal cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 3. (1 February 2008), pp. 772-781. by E. H. Lips, R. van Eijk, E. J. de Graaf, et al.P. G. Doornebosch, N. F. de Miranda, J. Oosting, T. Karsten, P. H. Eilers, R. A. Tollenaar, T. van Wezel, H. Morreau posted to loh model mutations progression snp-arrays by jfr on 2008-08-04 16:04:45 as
	Defining the blueprint of the cancer genome. [My Copy] Carcinogenesis, Vol. 29, No. 6. (June 2008), pp. 1087-1091. by V. E. Velculescu posted to can_genes mutations review by jfr on 2008-08-04 15:53:32 as along with 2 people cerami srp33
	Convergence of Mutation and Epigenetic Alterations Identifies Common Genes in Cancer That Predict for Poor Prognosis [My Copy] PLoS Med, Vol. 5, No. 5. (27 May 2008), e114. by Timothy A. Chan, Sabine Glockner, Joo M. Yi, et al.Wei Chen, Leander Van Neste, Leslie Cope, James G. Herman, Victor Velculescu, Kornel E. Schuebel, Nita Ahuja, Stephen B. Baylin posted to can_genes methylation mutations by jfr on 2008-08-04 14:41:19 as along with 3 people and 1 group frohike Zephyrus misonneh Roswell Cancer Crosstalk
	A quantum leap in our knowledge of breast cancer mutations. [My Copy] Breast cancer research : BCR, Vol. 8, No. 6. (15 December 2006), 304. by C. Caldas, P. A. Edwards posted to can_genes comment mutations by jfr on 2008-07-28 11:31:55 as along with 1 person ipark-kaist
	Genetic Progression and the Waiting Time to Cancer [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e225. by Niko Beerenwinkel, Tibor Antal, David Dingli, et al.Arne Traulsen, Kenneth W. Kinzler, Victor E. Velculescu, Bert Vogelstein, Martin A. Nowak posted to model mutations by jfr on 2008-04-09 11:21:42 as along with 3 people oelemento gwenknight srp33
	Associations of Ki-ras proto-oncogene mutation and p53 gene overexpression in sporadic colorectal adenomas with demographic and clinicopathologic characteristics. [My Copy] Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 15, No. 8. (August 2006), pp. 1443-1450. by J. G. Einspahr, M. E. Martinez, R. Jiang, et al.C. H. Hsu, A. Rashid, A. K. Bhattacharrya, D. J. Ahnen, E. T. Jacobs, P. S. Houlihan, C. R. Webb, D. S. Alberts, S. R. Hamilton posted to colon_cancer kras mutations p53 by jfr on 2008-04-07 12:51:07 as
	Genetic alteration and gene expression modulation during cancer progression. [My Copy] Molecular cancer, Vol. 3 (22 March 2004) by C. Garnis, T. P. Buys, W. L. Lam posted to copy-number model mutations progression review by jfr on 2008-04-07 12:48:40 as
	Integrative analysis of a cancer somatic mutome [My Copy] Molecular Cancer, Vol. 6 (05 February 2007), 13. by Pilar Hernandez, Xavier Sole, Joan Valls, et al.Victor Moreno, Gabriel Capella, Ander Urruticoechea, Miguel A. Pujana posted to breast_cancer copy-number gene_expression mutations by jfr on 2008-04-04 17:15:02 as along with 1 person jjohnson17
	Chromosomal changes in colorectal adenomas: relationship to gene mutations and potential for clinical utility. [My Copy] Genes Chromosomes Cancer, Vol. 45, No. 2. (February 2006), pp. 126-135. by A. Leslie, A. Stewart, D. U. Baty, et al.D. Mechan, L. McGreavey, G. Smith, C. R. Wolf, M. Sales, N. R. Pratt, R. J. Steele, F. A. Carey posted to colon_cancer copy-number crc_bib mutations by jfr on 2008-03-17 16:08:51 as
	Relationship between point gene mutation, chromosomal abnormality, and tumour suppressor gene methylation status in colorectal adenomas. [My Copy] J Pathol (10 August 2006) by H Judson, A Stewart, A Leslie, et al.Nr Pratt, DU Baty, Rjc Steele, Fa Carey posted to colon_cancer copy-number methylation mutations by jfr on 2008-03-17 16:06:36 as along with 1 person and 1 group ealloza BioinfoCIPF
	The prognostic significance of K-ras, p53, and APC mutations in colorectal carcinoma. [My Copy] Gut, Vol. 54, No. 9. (September 2005), pp. 1283-1286. by A. Conlin, G. Smith, F. A. Carey, C. R. Wolf, R. J. Steele posted to colon_cancer crc_bib mutations progression by jfr on 2008-03-17 14:55:22 as
	Mutations of APC, K-ras, and p53 are associated with specific chromosomal aberrations in colorectal adenocarcinomas. [My Copy] Cancer Res, Vol. 63, No. 15. (1 August 2003), pp. 4656-4661. by A. Leslie, N. R. Pratt, K. Gillespie, et al.M. Sales, N. M. Kernohan, G. Smith, C. R. Wolf, F. A. Carey, R. J. Steele posted to colon_cancer mutations progression by jfr on 2008-02-13 16:59:52 as
	New probabilistic network models and algorithms for oncogenesis. [My Copy] J Comput Biol, Vol. 13, No. 4. (May 2006), pp. 853-865. by M. Hjelm, M. Höglund, J. Lagergren posted to colon_cancer model mutations by jfr on 2008-02-11 12:02:34 as along with 1 person rdiaz
	Relationship between genetic alterations and prognosis in sporadic colorectal cancer [My Copy] International Journal of Cancer, Vol. 118, No. 7. (2006), pp. 1721-1727. by Shih-Ching Chang, Jen-Kou Lin, Shung H. Yang, Huann-Sheng Wang, Anna F. Li, Chin-Wen Chi posted to colon_cancer mutations prognosis by jfr on 2008-02-08 14:12:17 as along with 1 person cpnP
	Influence of age on adenomatous polyposis coli and p53 mutation frequency in sporadic colorectal cancer-rarity of co-occurrence of mutations in APC, K-ras, and p53 genes. [My Copy] Virchows Arch, Vol. 445, No. 5. (November 2004), pp. 465-471. by J. M. Chiang, Y. H. Wu Chou, S. C. Ma, J. R. Chen posted to colon_cancer mutations progression by jfr on 2008-02-08 14:10:41 as
	Molecular interactions in the Vogelstein model of colorectal carcinoma. [My Copy] J Pathol, Vol. 190, No. 4. (March 2000), pp. 412-416. by J. W. Arends posted to colon_cancer mutations progression review by jfr on 2008-02-08 14:07:21 as
	Mutations in APC, Kirsten-ras, and p53---alternative genetic pathways to colorectal cancer [My Copy] PNAS, Vol. 99, No. 14. (9 July 2002), pp. 9433-9438. by Gillian Smith, Francis A. Carey, Julie Beattie, et al.Murray J. Wilkie, Tracy J. Lightfoot, Jonathan Coxhead, Colin R. Garner, Robert J. Steele, Roland C. Wolf posted to colon_cancer crc_bib mutations progression by jfr on 2008-02-08 14:04:35 as along with 1 person cpnP
	APC mutations and other genetic and epigenetic changes in colon cancer. [My Copy] Mol Cancer Res, Vol. 5, No. 2. (February 2007), pp. 165-170. by W. S. Samowitz, M. L. Slattery, C. Sweeney, J. Herrick, R. K. Wolff, H. Albertsen posted to colon_cancer crc_bib mutations progression by jfr on 2008-02-07 11:58:21 as
	Different Genetic Features Associated with Colon and Rectal Carcinogenesis [My Copy] Clin Cancer Res, Vol. 10, No. 12. (15 June 2004), pp. 4015-4021. by Milo Frattini, Debora Balestra, Simona Suardi, et al.Maria Oggionni, Paola Alberici, Paolo Radice, Aurora Costa, Maria G. Daidone, Ermanno Leo, Silvana Pilotti, Lucio Bertario, Marco A. Pierotti posted to colon_cancer crc_bib mutations progression by jfr on 2008-02-07 11:56:54 as along with 1 person cpnP
	High-throughput oncogene mutation profiling in human cancer [My Copy] Nature Genetics, Vol. 39, No. 3. (11 February 2007), pp. 347-351. by Roman K. Thomas, Alissa C. Baker, Ralph M. Debiasi, et al.Wendy Winckler, Thomas Laframboise, William M. Lin, Meng Wang, Whei Feng, Thomas Zander, Laura E. Macconnaill, Jeffrey C. Lee, Rick Nicoletti, Charlie Hatton, Mary Goyette, Luc Girard, Kuntal Majmudar, Liuda Ziaugra, Kwok-Kin Wong, Stacey Gabriel, Rameen Beroukhim, Michael Peyton, Jordi Barretina, Amit Dutt, Caroline Emery, Heidi Greulich, Kinjal Shah, Hidefumi Sasaki, Adi Gazdar, John Minna, Scott A. Armstrong, Ingo K. Mellinghoff, Stephen F. Hodi, Glenn Dranoff, Paul S. Mischel, Tim F. Cloughesy, Stan F. Nelson, Linda M. Liau, Kirsten Mertz, Mark A. Rubin, Holger Moch, Massimo Loda, William Catalona, Jonathan Fletcher, Sabina Signoretti, Frederic Kaye, Kenneth C. Anderson, George D. Demetri, Reinhard Dummer, Stephan Wagner, Meenhard Herlyn, William R. Sellers, Matthew Meyerson, Levi A. Garraway posted to mutations by jfr on 2008-02-05 12:24:12 as along with 7 people and 1 group allmensch huiminC oelemento aviad_work ealloza xingxu cerami BioinfoCIPF
	The Genomic Landscapes of Human Breast and Colorectal Cancers. [My Copy] Science (11 October 2007) by Laura D D. Wood, D Williams W. Parsons, Siân Jones, et al.Jimmy Lin, Tobias Sjöblom, Rebecca J J. Leary, Dong Shen, Simina M M. Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A. Wilson, Joshua S S. Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K. Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H. Park, Charit L L. Pethiyagoda, P V Krishna V. Pant, Dennis G G. Ballinger, Andrew B B. Sparks, James Hartigan, Douglas R R. Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D. Markowitz, Giovanni Parmigiani, Kenneth W W. Kinzler, Victor E E. Velculescu, Bert Vogelstein posted to breast_cancer colon_cancer crc_bib genomics mutations by jfr on 2008-01-23 14:47:37 as along with 17 people and 1 group zufar ssgong daed guhjy tmmurali rdiaz eisei ramensky massivemayhem bioyang cabbagezs xingxu shikin renatomilani gwenknight cerami srp33 VUMCGenomics
	TP53 mutations are associated with a particular pattern of genomic imbalances in breast carcinomas [My Copy] The Journal of Pathology, Vol. 207, No. 1. (September 2005), pp. 14-19. by Kristine Kleivi, Chieu B. Diep, Nikos Pandis, Sverre Heim, Manuel R. Teixeira, Ragnhild A. Lothe posted to breast_cancer copy-number mutations p53 by jfr on 2007-12-07 13:09:24 as along with 1 person Zephyrus
	A multidimensional analysis of genes mutated in breast and colorectal cancers [My Copy] Genome Res. (10 August 2007), gr.6431107. by Jimmy Lin, Christine M. Gan, Xiaosong Zhang, et al.Sian Jones, Tobias Sjoblom, Laura D. Wood, Williams D. Parsons, Nickolas Papadopoulos, Kenneth W. Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E. Velculescu posted to breast_cancer colon_cancer mutations by jfr on 2007-12-05 10:26:48 as along with 3 people chrisamiller cerami xingxu
	Poor prognosis in carcinoma is associated with a gene expression signature of aberrant PTEN tumor suppressor pathway activity. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 18. (1 May 2007), pp. 7564-7569. by L. H. Saal, P. Johansson, K. Holm, et al.S. K. Gruvberger-Saal, Q. B. She, M. Maurer, S. Koujak, A. A. Ferrando, P. Malmström, L. Memeo, J. Isola, P. O. Bendahl, N. Rosen, H. Hibshoosh, M. Ringnér, A. Borg, R. Parsons posted to mutations pten by jfr on 2007-11-20 16:06:00 as along with 2 people zufar hpaces
	Common variants in the ATM, BRCA1, BRCA2, CHEK2 & TP53 cancer susceptibility genes are unlikely to increase breast cancer risk [My Copy] Breast Cancer Research, Vol. 9 (11 April 2007), R27. by Caroline Baynes, Catherine S. Healey, Karen A. Pooley, et al.Serena Scollen, Robert N. Luben, Deborah J. Thompson, Paul D. P. Pharoah, Douglas F. Easton, Bruce A. J. Ponder, Alison M. Dunning posted to breast_cancer mutations by jfr on 2007-09-05 12:00:21 as
	Human cancers express a mutator phenotype. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 48. (28 November 2006), pp. 18238-18242. by J. H. Bielas, K. R. Loeb, B. P. Rubin, L. D. True, L. A. Loeb posted to cancer mutations by jfr on 2007-09-05 11:58:26 as
	Patterns of somatic mutation in human cancer genomes [My Copy] Nature, Vol. 446, No. 7132. (08 March 2007), pp. 153-158. by Christopher Greenman, Philip Stephens, Raffaella Smith, et al.Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O/'Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok K. Khoo, Bin T. Teh, Siu T. Yuen, Suet Y. Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton posted to cancer mutations by jfr on 2007-07-31 09:23:04 as along with 15 people Neeperando xingxu ssgong dbensasson koller kentsis massivemayhem efge Garamonfok daed Petersarkies ramensky frohike cerami srp33
	The continuing search for cancer-causing somatic mutations [My Copy] Breast Cancer Research, Vol. 9 (22 February 2007), 101. by Gillian L. Dalgliesh, Andrew P. Futreal posted to breast_cancer editorial mutations by jfr on 2007-07-05 10:21:26 as
	Spectrum of mutations in BRCA1, BRCA2, CHEK2, and TP53 in families at high risk of breast cancer. [My Copy] JAMA, Vol. 295, No. 12. (22 March 2006), pp. 1379-1388. by T. Walsh, S. Casadei, K. H. Coats, et al.E. Swisher, S. M. Stray, J. Higgins, K. C. Roach, J. Mandell, M. K. Lee, S. Ciernikova, L. Foretova, P. Soucek, M. C. King posted to brca breast_cancer mutations by jfr on 2007-05-14 15:01:18 as
	Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas [My Copy] Breast Cancer Research, Vol. 9 (16 January 2007), R5. by Stephen J. Chanock, Laurie Burdett, Meredith Yeager, et al.Victor Llaca, Anita Langerod, Shafaq Presswala, Rolf Kaaresen, Robert L. Strausberg, Daniela S. Gerhard, Vessela Kristensen, Charles M. Perou, Anne-Lise Borresen-Dale posted to breast_cancer mutations by jfr on 2007-05-14 14:46:02 as along with 1 person yuzhenye
	Cancer outlier differential gene expression detection. [My Copy] Biostatistics (4 October 2006) by Baolin Wu posted to mutations by jfr on 2007-01-11 13:38:33 as along with 3 people ipark-kaist ihpark shigepong
	The Consensus Coding Sequences of Human Breast and Colorectal Cancers [My Copy] Science, Vol. 314, No. 5797. (13 October 2006), pp. 268-274. by Tobias Sjoblom, Sian Jones, Laura D. Wood, et al.Williams D. Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J. Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D. Markowitz, Joseph Willis, Dawn Dawson, James K. Willson, Adi F. Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H. Park, Kurtis E. Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W. Kinzler, Victor E. Velculescu posted to breast_cancer colon_cancer crc_bib mutations by jfr on 2006-11-08 11:16:44 as along with 22 people and 1 group backlin alessandrobrozzi wimufi aalibes bicko tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu mingzhi chrisamiller frohike gwenknight EBI-regulation
	Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. [My Copy] Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648. by S. A. Tomlins, D. R. Rhodes, S. Perner, et al.S. M. Dhanasekaran, R. Mehra, X. W. Sun, S. Varambally, X. Cao, J. Tchinda, R. Kuefer, C. Lee, J. E. Montie, R. B. Shah, K. J. Pienta, M. A. Rubin, A. M. Chinnaiyan posted to cancer mutations by jfr on 2006-11-07 11:55:36 as along with 8 people ipark-kaist absterga ihpark kentsis tuck emb51 oelemento winterschlaefer
	COPA-cancer outlier profile analysis. [My Copy] Bioinformatics (7 August 2006) by James W W. Macdonald, Debashis Ghosh posted to bioinformatics mutations by jfr on 2006-11-07 11:31:30 as along with 3 people stubrown wimufi shigepong
	PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer. [My Copy] Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2269-2275. by A. E. Teschendorff, A. Naderi, N. L. Barbosa-Morais, C. Caldas posted to bioinformatics mutations by jfr on 2006-11-03 17:24:28 as along with 2 people Scis0000002 macavity1g
	Outlier sums for differential gene expression analysis. [My Copy] Biostatistics (15 May 2006) by Robert Tibshirani, Trevor Hastie posted to bioinformatics mutations by jfr on 2006-11-03 16:29:57 as

Note: You may cite this page as: http://www.citeulike.org/user/jfr/tag/mutations

breast_cancer	474
review	345
mirna	341
software	275
classification	272
colon_cancer	230
gene_expression	176
methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
clustering	121
bioinformatics	121
feature_selection	106
meta-analysis	97
affy	86
database	81
therapy	80
mirna_target	76
crc_bib	69
gene_set_analysis	69
array-cgh	69
regulation	66
low_level	66
systems_biology	63
rt-pcr	62
pathway_analysis	60
genomics	59
subtypes	58
annotation	57
snp-arrays	57
comment	52
quality_control	48
normalization	46
metastasis	46
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
microarray_analysis	40
estrogen	40
proteomics	39
cancer	38
statistics	37
bioconductor	37
protein_interaction	35
alternative_splicing	35
progression	35
markers	35
fdr	34
snp	33
methylation	32
r	30
tamoxifen	28
class_discovery	28
standards	28
mutation	28
exon_arrays	25
jfrbib	24
two-color	23
mir17-92	23
ovarian_cancer	23
microarray_protocol	23
experiment_design	22
pathway	22
co-expression	21
comparison	21
brca	21
survival_analysis	20
model	20
tfbs	20
kras	19
treatment	19
p53	19
platform_comparison	18
functional_analysis	18
technology	17
illumina	16
stem_cell	16
multiple_testing	16
evaluation	16
chip-chip	16
module_detection	16
jfrbib04-09	16
reproducible_research	15
nmf	15
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antisense	15
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erbb	14
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bio_signature	14
sequencing	14
egfr	13
rna_quality	13
stageii	13
staging	13
lung_cancer	13
tma	13
gene_ontology	12
genotyping	12
maqc	12
cnv	12
marker	12
protocol	11
semantic_web	11
proliferation	11
cell_line	11
drug_discovery	11
missing_values	11
gene_lists	11
loh	11
genome_browser	10
pten	10
disease_genes	10
visualization	10
control_genes	10
tissue_specificity	10
mirna_regulation	9
tgfb	9
probe_design	9
msi	9
immunohistochemistry	9
segmentation	9
sample_size	8
boutique_arrays	8
e2f1	8
consensus_clustering	8
time-course	8
inter-laboratory	8
chip-seq	8
personalized_medicine	8
can_genes	8
chemotherapy	7
lymphoma	7
validation	7
18q_loh	7
myc	7
tiling_array	7
editorial	7
stem	6
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motif	6
plos_rules	6
graphs	6
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promoters	6
mir21	6
hpc	6
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correlation	6
ontology	6
serum	6
plos_start	5
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plos_primer	5
survival	5
trial	5
cin	5
machine_learning	5
gwas	5
cross-platform	5
functional_genomics	5
grid_computing	5
prioritization	5
her2	5
radiation	5
gene_pairs	5
resource	4
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er	4
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mir34	4
grading	4
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lims	4
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biobank	4
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go	4
stroma	3
primer	3
bim	3
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confounders	3
tutorial	3
mass_spec	3
interaction	3
small_molecule	3
outlier	3
apc	3
wnt	3
svm	3
sop	3
web_server	3
chromatin	3
er-positive	3
copa	3
mage	3
sage	3
roc	3
pik3ca	3
mir192	3
evolution	3
micro_environment	3
hapmap	3
loops	3
cross-study	3
pr	3
agilent	3
stability	3
glioblastoma	3
triple_negative	3
ontologies	3
biomarkers	3
pca	3
filtering	2
upd	2
mir215	2
thyroid	2
translational	2
alignment	2
dna_damage	2
qtl	2
semi-supervised	2
mutual_information	2
differential_expression	2
ephb	2
mir20a	2
epigenetics	2
protein_microarray	2
luminal_subtype	2
lymphocytes	2
low-level	2
cell_cycle	2
chemo	2
ranked_lists	2
meeting_report	2
protein_networks	2
priors	2
stageiii	2
compression	2
dfs	2
recommendation	2
oncomine	2
rin	2
cetuximab	2
20q	2
sweave	2
batch-effect	2
serm	2
smad	2
snp_arrays	2
caching	2
guidelines	2
8q24	2
gene_fusion	2
bcatenin	2
target	2
local_recurrence	2
cdk8	2
permutations	2
tbfs	2
diagnostic	2
flow_cytometry	2
in-situ	2
projection	2
letter	2
web_resource	2
ngs	2
aroma	1
au-rich	1
apoptosis	1
dcc	1
biclustering	1
beads	1
pancreatic_cancer	1
cross-species	1
disease	1
rna-interference	1
latent	1
mir16-1	1
dasl	1
python	1
cervical_cancer	1
shrna	1
reproducibility	1
perturbation	1
stem_cells	1
p21	1
dye_bias	1
in_situ_hybridization	1
meta_analysis	1
formalization	1
met	1
passenger_genes	1
tissue_origin	1
cancer_hallmarks	1
selection_bias	1
modules	1
3utr	1
erg	1
pilot_study	1
power_analysis	1
ret	1
driver_genes	1
metagene	1
cables1	1
prb	1
mixture_models	1
data_mining	1
fgfr2	1
fantom	1
genoty	1
graph_approach	1
signaling	1
mir-106b-25	1
oncogene_addiction	1
mirna221	1
mir143	1
ecm	1
rb	1
translation	1
eno1	1
assembly	1
smad7	1
pre-post	1
circulating_tumor_cells	1
neural_networks	1
bmp	1
brain_cancer	1
er-negative	1
distance	1
melanoma	1
ccnd1	1
gene_clusters	1
formats	1
454	1
gene_function_prediction	1
gene_networks	1
mir145	1
news	1
markup	1
aurora_kinase	1
ucs	1
estradiol	1
single_cell	1
association_studies	1
xml	1
mcm7	1
translocation	1
il8	1
plasma	1
simulation	1
concordance	1
mir101	1
mirna_discovery	1
mir203	1
ependymoma	1
mir15a	1
genome_assembly	1
tcga	1
rnai	1
hypoxia	1
microrna	1
cloud_computing	1
genetics	1
myb	1
mir155	1
gastric_cancer	1
bambi	1
latex	1
fish	1
nomogram	1
ensemble	1
dimension_reduction	1
asco	1
aging	1
taxane	1
pattern_discovery	1
early-stage	1
bayesian	1
invasion	1
pbc	1
model-based	1
study_design	1
clusterin	1
sampling	1
mir135	1
randomization	1
oncogene	1
mirna222	1
mrna-seq	1
est_analysis	1
mir199	1
mir126	1
akt	1
mir449	1
target_discovery	1
funding	1
braf	1
wiki	1

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