jfr's network [148 articles] Export

Recent papers added to jfr's library classified by the tag network. You can also see everyone's network.

	ViaComplex: software for landscape analysis of gene expression networks in genomic context [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1468-1469. by Mauro A. A. Castro, Jose L. Filho, Rodrigo J. S. Dalmolin, et al.Marialva Sinigaglia, Jose C. F. Moreira, Jose C. M. Mombach, Rita M. C. de Almeida posted to visualization software network gene_expression by jfr on 2009-11-15 16:20:51 as along with 3 people guhjy renatomilani rdiaz
	The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (2009), 20. by Cinzia Di Pietro, Marco Ragusa, Davide Barbagallo, et al.Laura Duro, Maria Guglielmino, Alessandra Majorana, Rosario Angelica, Marina Scalia, Luisa Statello, Loredana Salito, Luisa Tomasello, Salvo Pernagallo, Salvo Valenti, Vito D'Agostino, Patrizio Triberio, Igor Tandurella, Giuseppe Palumbo, Piera La Cava, Viviana Cafiso, Taschia Bertuccio, Maria Santagati, Giovanni L. Destri, Salvatore Lanzafame, Francesco Di Raimondo, Stefania Stefani, Bud Mishra, Michele Purrello posted to network apoptosis by jfr on 2009-11-10 17:15:49 as along with 1 person shikin
	Integrated analysis of breast cancer cell lines reveals unique signaling pathways [My Copy] Genome Biology, Vol. 10, No. 3. (25 March 2009), R31. by Laura Heiser, Nicholas Wang, Carolyn Talcott, et al.Keith Laderoute, Merrill Knapp, Yinghui Guan, Zhi Hu, Safiyyah Ziyad, Barbara Weber, Sylvie Laquerre, Jeffrey Jackson, Richard Wooster, Wen Kuo, Joe Gray, Paul Spellman posted to subtypes network cell_line breast_cancer by jfr on 2009-11-09 13:31:09 as along with 4 people and 1 group ipark-kaist thegoose shikin Stew Bioinformatics - CRUK
	A dynamic network approach for the study of human phenotypes [My Copy] (22 Sep 2009) by Cesar A. Hidalgo, Nicholas Blumm, Albert-Laszlo Barabasi, Nicholas Christakis posted to network disease by jfr on 2009-11-08 22:42:09 as along with 3 people pak apocapoc marinari
	Information flow analysis of interactome networks. [My Copy] PLoS computational biology, Vol. 5, No. 4. (10 April 2009), e1000350. by Patrycja Vasilyev V. Missiuro, Kesheng Liu, Lihua Zou, et al.Brian C. Ross, Guoyan Zhao, Jun S. Liu, Hui Ge posted to protein_interaction network by jfr on 2009-11-08 22:37:00 as along with 18 people and 1 group freesci flbarroso peteruetz phoenixzxl robfsouza reyez VGreiff colmryan sobolevnrm hryk shikin dswan fgibson coela ddahlem mstumpf zwang friendpine baker-group
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	Toward accurate reconstruction of functional protein networks. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Nir Yosef, Lior Ungar, Einat Zalckvar, et al.Adi Kimchi, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to systems_biology protein_networks network by jfr on 2009-11-02 17:11:35 as along with 6 people poirel zwang roys renatomilani phoenixzxl biomcgary
	A genomic strategy to elucidate modules of oncogenic pathway signaling networks. [My Copy] Molecular cell, Vol. 34, No. 1. (10 April 2009), pp. 104-114. by Jeffrey T. Chang, Carlos Carvalho, Seiichi Mori, et al.Andrea H. Bild, Michael L. Gatza, Quanli Wang, Joseph E. Lucas, Anil Potti, Phillip G. Febbo, Mike West, Joseph R. Nevins posted to pathway_analysis network modules gene_lists by jfr on 2009-11-02 15:54:31 as along with 8 people and 1 group bertelsen jmstat guhjy mspivako renatomilani fenghezi shikin roys Journal picks
	Analysis of Gene Sets Based on the Underlying Regulatory Network [My Copy] Journal of Computational Biology, Vol. 16, No. 3. (March 2009), pp. 407-426. by Ali Shojaie, George Michailidis posted to gene_set_analysis network by jfr on 2009-07-23 16:00:07 as along with 4 people and 1 group zufar shikin guhjy rdiaz Bioinformatics
	Dysregulated gene expression networks in human acute myelogenous leukemia stem cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 9. (3 March 2009), pp. 3396-3401. by R. Majeti, M. W. Becker, Q. Tian, et al.T. L. Lee, X. Yan, R. Liu, J. H. Chiang, L. Hood, M. F. Clarke, I. L. Weissman posted to network pathway stem by jfr on 2009-07-22 13:13:43 as along with 2 people tibbitts renatomilani
	Correlation signature of the macroscopic states of the gene regulatory network in cancer. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 11. (17 March 2009), pp. 4079-4084. by Nikolai Slavov, Kenneth A. Dawson posted to cancer gene_expression meta-analysis network prioritization by jfr on 2009-07-22 12:52:06 as along with 5 people and 1 group zufar fpattyn vertikalist rdiaz provero BTS-PT-AS-CS
	Disease candidate gene identification and prioritization using protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 73. by Jing Chen, Bruce Aronow, Anil Jegga posted to disease_genes network prioritization protein_interaction by jfr on 2009-07-09 12:34:30 as along with 12 people and 1 group carlk zufar guhjy daforerog saket provero mitko neils barriot grahamc renatomilani rjazwiec Bioinformatics
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to data_curation network software systems_biology by jfr on 2009-06-11 11:24:27 as along with 22 people and 2 groups m_j pmendes windman83 raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	Network-based inference of cancer progression from microarray data. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 6, No. 2. (n 2009), pp. 200-212. by Y. Park, S. Shackney, R. Schwartz posted to microarray_analysis network progression by jfr on 2009-06-09 17:10:23 as
	Dynamic modularity in protein interaction networks predicts breast cancer outcome. [My Copy] Nature biotechnology, Vol. 27, No. 2. (1 February 2009), pp. 199-204. by Ian W. Taylor, Rune Linding, David Warde-Farley, et al.Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris, Jeffrey L. Wrana posted to breast_cancer network prognosis by jfr on 2009-04-28 13:55:26 as along with 14 people and 1 group ukhan zufar guhjy frohike fenghezi ptrobajo jaimie nedwards dakelley absterga phoenixzxl grahamc provero brianb cube_and_beyond
	Revealing Biological Modules via Graph Summarization [My Copy] Journal of Computational Biology, Vol. 16, No. 2. (2009), pp. 253-264. by Saket Navlakha, Michael C. Schatz, Carl Kingsford posted to graphs module_detection network by jfr on 2009-04-20 15:38:26 as along with 2 people jwhitney dakelley
	SIMoNe: Statistical Inference for MOdular NEtworks [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 417-418. by Julien Chiquet, Alexander Smith, Gilles Grasseau, Catherine Matias, Christophe Ambroise posted to co-expression network r software by jfr on 2009-04-20 10:34:26 as along with 1 person rdiaz
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to module_detection network regulation by jfr on 2009-04-15 13:57:54 as along with 12 people ptrobajo TRHvidsten guhjy tvdbulck mhamada roys zufar rdiaz druvus verdicchio imina dolchan
	Fast calculation of pairwise mutual information for gene regulatory network reconstruction. [My Copy] Computer methods and programs in biomedicine, Vol. 94, No. 2. (May 2009), pp. 177-180. by P. Qiu, A. J. Gentles, S. K. Plevritis posted to mutual_information network regulation by jfr on 2009-04-14 11:14:09 as along with 1 person frohike
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Peter Langfelder, Steve Horvath posted to co-expression network r software by jfr on 2009-03-30 14:54:23 as along with 15 people and 2 groups jeremymiller daforerog sficklin lwaldron ekotelnikova slv23 rdiaz guhjy natstreet druvus cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	Align human interactome with phenome to identify causative genes and networks underlying disease families. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 98-104. by Xuebing Wu, Qifang Liu, Rui Jiang posted to disease_genes network by jfr on 2009-03-24 12:32:35 as along with 5 people daforerog saket druvus guhjy grahamc
	Topological properties of protein interaction networks from a structural perspective. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 6. (December 2008), pp. 1398-1403. by A. Gursoy, O. Keskin, R. Nussinov posted to network protein_interaction by jfr on 2009-03-23 16:28:42 as along with 2 people chica higueruelo
	Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Carlos Prieto, Alberto Risueño, Celia Fontanillo, Javier De las Rivas posted to co-expression network by jfr on 2009-03-23 15:30:40 as along with 1 person mingzhi
	An empirical framework for binary interactome mapping. [My Copy] Nature methods, Vol. 6, No. 1. (07 January 2009), pp. 83-90. by Kavitha Venkatesan, Jean-François F. Rual, Alexei Vazquez, et al.Ulrich Stelzl, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il I. Goh, Muhammed A. Yildirim, Nicolas Simonis, Kathrin Heinzmann, Fana Gebreab, Julie M. Sahalie, Sebiha Cevik, Christophe Simon, Anne-Sophie S. de Smet, Elizabeth Dann, Alex Smolyar, Arunachalam Vinayagam, Haiyuan Yu, David Szeto, Heather Borick, Amélie Dricot, Niels Klitgord, Ryan R. Murray, Chenwei Lin, Maciej Lalowski, Jan Timm, Kirstin Rau, Charles Boone, Pascal Braun, Michael E. Cusick, Frederick P. Roth, David E. Hill, Jan Tavernier, Erich E. Wanker, Albert-László L. Barabási, Marc Vidal posted to network protein_interaction by jfr on 2009-03-18 15:30:17 as along with 4 people chica lawraga lp2 guhjy
	Differential Expression and Network Inferences through Functional Data Modeling. [My Copy] Biometrics (13 November 2008) by Donatello Telesca, Lurdes Y T Y. Inoue, Mauricio Neira, Ruth Etzioni, Martin Gleave, Colleen Nelson posted to network by jfr on 2009-03-16 16:43:17 as
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to module_detection network by jfr on 2009-03-11 10:38:49 as along with 7 people dolchan diamantis imina saket renatomilani lptolik jonesn
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to network by jfr on 2009-03-11 10:32:08 as along with 8 people sotacam kemalpak msuarezdiez pengchy lptolik druvus isimpson sjung
	Boolean implication networks derived from large scale, whole genome microarray datasets [My Copy] Genome Biology, Vol. 9 (30 October 2008), R157. by Debashis Sahoo, David L. Dill, Andrew J. Gentles, Robert Tibshirani, Sylvia K. Plevritis posted to network by jfr on 2009-03-10 16:22:07 as along with 8 people dolchan zufar rdiaz imina pengchy guhjy mdperry bcondon
	minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 461. by Patrick Meyer, Frederic Lafitte, Gianluca Bontempi posted to bioconductor network r software by jfr on 2009-03-10 16:17:17 as along with 9 people sotacam pengchy dswan guhjy lptolik renatomilani phoenixzxl druvus natstreet
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted to network software by jfr on 2009-02-25 18:05:39 as along with 4 people and 1 group druvus lptolik dswan guhjy Bioinformatics
	Analysis of regulatory network topology reveals functionally distinct classes of microRNAs [My Copy] Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6494-6503. by Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, Jiang Qian posted to loops mirna network systems_biology by jfr on 2009-02-23 10:59:49 as along with 9 people and 2 groups megraw emptyhb ealloza mtagaya heliopais giovenko samgj pengchy snow_dragon BenosLab microRNA
	Identifying differentially expressed subnetworks with MMG. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 23. (1 December 2008), pp. 2792-2793. by J. Noirel, G. Sanguinetti, P. C. Wright posted to bioconductor network r software by jfr on 2009-02-18 10:18:59 as along with 11 people zufar pauldobson sg45653 pengchy behindtherabbit roys jiayi369 tmmurali bertelsen guhjy rdiaz
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to breast_cancer integration network regulation tbfs by jfr on 2009-01-13 10:37:25 as along with 5 people Zephyrus Borelli druvus xili03 pengchy
	Bayesian learning of biological pathways on genomic data assimilation [My Copy] Bioinformatics (25 September 2008), btn483. by Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi posted to network pathway by jfr on 2009-01-10 11:05:32 as along with 7 people bertrandservin behindtherabbit guhjy dullhunk phoenixzxl rdiaz renatomilani
	Presenting and exploring biological pathways with PathVisio [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 399. by Martijn van Iersel, Thomas Kelder, Alexander Pico, et al.Kristina Hanspers, Susan Coort, Bruce Conklin, Chris Evelo posted to network pathway_analysis software visualization by jfr on 2009-01-10 11:04:25 as along with 8 people and 3 groups jvb daforerog Effie guhjy ptrobajo AlexanderPico renatomilani thomaskelder BiGCaT Bioinformatics NaCTeM ConklinLab
	NetGrep: fast network schema searches in interactomes [My Copy] Genome Biology, Vol. 9, No. 9. (2008) by Eric Banks, Elena Nabieva, Ryan Peterson, Mona Singh posted to network protein_interaction software by jfr on 2009-01-10 11:02:36 as along with 3 people guhjy barriot neils
	FunNet: an integrative tool for exploring transcriptional interactions. [My Copy] Bioinformatics (Oxford, England) (17 September 2008) by Edi Prifti, Jean-Daniel D. Zucker, Karine Clement, Corneliu Henegar posted to gene_interaction network regulation software by jfr on 2009-01-09 12:08:54 as along with 2 people fhalbrit guhjy
	The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008), 80. by Michael Hsing, Kendall Byler, Artem Cherkasov posted to community gene_ontology network by jfr on 2009-01-08 16:40:51 as along with 5 people guhjy natstreet kluck dolchan renatomilani
	Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2491-2497. by Antonio Reverter, Eva K. F. Chan posted to integration network by jfr on 2009-01-08 15:19:39 as along with 3 people sotacam ggallone barriot
	Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2482-2490. by Elissa J. Cosgrove, Yingchun Zhou, Timothy S. Gardner, Eric D. Kolaczyk posted to network regulation by jfr on 2009-01-08 13:57:58 as along with 2 people guhjy ptrobajo
	Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. [My Copy] Biochimica et biophysica acta, Vol. 1789, No. 4. (6 April 2009), pp. 363-374. by W. J. Longabaugh, E. H. Davidson, H. Bolouri posted to network regulation software visualization by jfr on 2008-12-05 14:42:40 as along with 2 people druvus guhjy
	Network-constrained Regularization and Variable Selection for Analysis of Genomic Data. [My Copy] Bioinformatics (1 March 2008) by Caiyan Li, Hongzhe Li posted to classification feature_selection network by jfr on 2008-11-28 14:30:55 as along with 3 people ptrobajo guhjy verdicchio
	Estimating Large Scale Signaling Networks through Nested Effect Models with Intervention Effects from Microarray Data. [My Copy] Bioinformatics (28 January 2008) by Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beissbarth posted to network signaling by jfr on 2008-11-28 14:00:09 as along with 3 people guhjy shigepong czeller
	In Response to Comment on 'Network-constrained regularization and variable selection for analysis of genomic data' [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), 2569. by Caiyan Li, Hongzhe Li posted to classification network by jfr on 2008-11-26 17:43:59 as
	Comment on 'Network-constrained regularization and variable selection for analysis of genomic data' [My Copy] Bioinformatics (Oxford, England) (4 August 2008) by Harald Binder, Martin Schumacher posted to classification network by jfr on 2008-11-26 17:41:37 as
	Integrating Expression Data with Domain Interaction Networks [My Copy] Bioinformatics (19 August 2008), btn437. by Dorothea Emig, Melissa S. Cline, Thomas Lengauer, Mario Albrecht posted to gene_expression integration network by jfr on 2008-11-26 11:46:53 as along with 7 people chad_davis guhjy zwang barriot druvus zimbo1 grahamc
	Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2384-2390. by Kristen A. Wieghaus, Erwin P. Gianchandani, Mikell A. Paige, Milton L. Brown, Edward A. Botchwey, Jason A. Papin posted to drug_discovery network pathway by jfr on 2008-11-26 11:10:18 as along with 1 person ptrobajo
	Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Wei Jiang, Xia Li, Shaoqi Rao, et al.Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang posted to colon_cancer eno1 il8 network pathway pathway_analysis by jfr on 2008-11-26 11:07:34 as along with 1 person frohike
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to network protein_interaction by jfr on 2008-11-24 16:46:32 as along with 27 people and 1 group aceol mgomes nzm pauldobson cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz ocs cerca ptrobajo carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
	Data completeness[mdash]the Achilles heel of drug-target networks [My Copy] Nat Biotech, Vol. 26, No. 9. (September 2008), pp. 983-984. by Jordi Mestres, Elisabet Gregori-Puigjane, Sergi Valverde, Ricard V. Sole posted to comment network therapy by jfr on 2008-11-21 10:32:23 as along with 3 people mingzhi apocapoc ptrobajo

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breast_cancer	469
review	341
mirna	334
software	272
classification	269
colon_cancer	227
gene_expression	169
methodology	169
copy-number	155
network	148
integration	133
microarray_technology	133
bioinformatics	121
clustering	119
feature_selection	105
meta-analysis	94
affy	85
database	81
therapy	80
mirna_target	74
array-cgh	69
crc_bib	69
gene_set_analysis	67
low_level	66
regulation	66
systems_biology	63
pathway_analysis	60
rt-pcr	60
genomics	59
subtypes	57
annotation	56
snp-arrays	56
comment	52
quality_control	48
normalization	44
metastasis	43
mutations	43
ffpe	41
prognosis	41
deep_sequencing	40
estrogen	40
microarray_analysis	40
proteomics	38
bioconductor	37
cancer	37
statistics	37
alternative_splicing	35
progression	35
protein_interaction	35
fdr	34
markers	34
methylation	32
snp	32
class_discovery	28
r	28
tamoxifen	28
mutation	27
standards	27
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
ovarian_cancer	21
model	20
survival_analysis	20
tfbs	20
p53	19
treatment	19
functional_analysis	18
kras	18
platform_comparison	18
chip-chip	16
evaluation	16
illumina	16
jfrbib04-09	16
multiple_testing	16
stem_cell	16
technology	16
antisense	15
biomarker	15
module_detection	15
nmf	15
text-mining	15
basal_subtype	14
erbb	14
sequencing	14
bio_signature	13
reproducible_research	13
rna_quality	13
stageii	13
staging	13
tma	13
cnv	12
egfr	12
gene_ontology	12
genotyping	12
lung_cancer	12
maqc	12
marker	12
cell_line	11
drug_discovery	11
loh	11
missing_values	11
proliferation	11
protocol	11
semantic_web	11
control_genes	10
disease_genes	10
gene_lists	10
genome_browser	10
pten	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
mirna_regulation	9
msi	9
probe_design	9
segmentation	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
personalized_medicine	8
sample_size	8
tgfb	8
time-course	8
18q_loh	7
lymphoma	7
myc	7
tiling_array	7
validation	7
community	6
correlation	6
editorial	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
motif	6
nci60	6
non-coding	6
ontology	6
plos_rules	6
promoters	6
read_mapping	6
serum	6
stem	6
chemotherapy	5
cin	5
cross-platform	5
functional_genomics	5
gene_pairs	5
grid_computing	5
gwas	5
her2	5
machine_learning	5
mir21	5
plos_primer	5
plos_start	5
radiation	5
trial	5
biobank	4
data_curation	4
er	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
pooling	4
prioritization	4
prostate_cancer	4
public_data	4
resource	4
survival	4
web_services	4
agilent	3
apc	3
bim	3
biomarkers	3
chromatin	3
confounders	3
copa	3
evolution	3
functional_classification	3
glioblastoma	3
hapmap	3
interaction	3
loops	3
mage	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
triple_negative	3
tutorial	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cell_cycle	2
cetuximab	2
chemo	2
diagnostic	2
dna_damage	2
ephb	2
epigenetics	2
er-positive	2
filtering	2
flow_cytometry	2
gene_fusion	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
luminal_subtype	2
lymphocytes	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
svm	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_resource	2
web_server	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
association_studies	1
au-rich	1
aurora_kinase	1
bayesian	1
beads	1
biclustering	1
bmp	1
braf	1
brain_cancer	1
cables1	1
cancer_hallmarks	1
cervical_cancer	1
circulating_tumor_cells	1
cloud_computing	1
clusterin	1
compression	1
concordance	1
cross-species	1
cross-study	1
dasl	1
dcc	1
dfs	1
dimension_reduction	1
disease	1
distance	1
driver_genes	1
dye_bias	1
early-stage	1
ecm	1
eno1	1
ensemble	1
ependymoma	1
erg	1
er-negative	1
est_analysis	1
estradiol	1
fantom	1
fgfr2	1
fish	1
formalization	1
formats	1
funding	1
gastric_cancer	1
gene_clusters	1
gene_function_prediction	1
gene_networks	1
genetics	1
genome_assembly	1
genoty	1
graph_approach	1
hypoxia	1
il8	1
in_situ_hybridization	1
invasion	1
latent	1
latex	1
low-level	1
markup	1
mcm7	1
melanoma	1
met	1
meta_analysis	1
metagene	1
microrna	1
mir101	1
mir-106b-25	1
mir126	1
mir135	1
mir143	1
mir145	1
mir155	1
mir15a	1
mir16-1	1
mir199	1
mir203	1
mir449	1
mirna221	1
mirna222	1
mirna_discovery	1
mixture_models	1
model-based	1
modules	1
mrna-seq	1
myb	1
neural_networks	1
news	1
ngs	1
nomogram	1
oncogene	1
oncogene_addiction	1
p21	1
pancreatic_cancer	1
passenger_genes	1
pbc	1
perturbation	1
pilot_study	1
plasma	1
power_analysis	1
prb	1
pre-post	1
python	1
randomization	1
ranked_lists	1
rb	1
ret	1
rnai	1
rna-interference	1
sampling	1
selection_bias	1
shrna	1
signaling	1
simulation	1
single_cell	1
smad7	1
stageiii	1
stem_cells	1
study_design	1
target_discovery	1
taxane	1
tcga	1
tissue_origin	1
translation	1
translocation	1
ucs	1
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