jfr's regulation [66 articles] Export

Recent papers added to jfr's library classified by the tag regulation. You can also see everyone's regulation.

	FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions [My Copy] Genome Biology, Vol. 10, No. 4. (2009), R39. by Jessica Severin, Andrew Waterhouse, Hideya Kawaji, et al.Timo Lassmann, Erik van Nimwegen, Piotr Balwierz, Michiel de Hoon, David Hume, Piero Carninci, Yoshihide Hayashizaki, Harukazu Suzuki, Carsten Daub, Alistair Forrest posted to web_resource regulation functional_genomics by jfr on 2009-11-23 16:16:42 as along with 10 people Garamonfok rdiaz bertelsen YukaH ealloza guhjy pengchy natstreet druvus dolchan
	Computational methods for discovering gene networks from expression data [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 408-423. by Wei-Po Lee, Wen-Shyong Tzou posted to review regulation gene_networks by jfr on 2009-11-23 14:23:16 as along with 9 people and 1 group jperkins sotacam GustavoLacerda gotgenes ruichu antonkratz renatomilani lp2 TRHvidsten Orengo Group Journal Picks
	The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation [My Copy] Genome Biology, Vol. 10, No. 4. (2009), R40. by Hideya Kawaji, Jessica Severin, Marina Lizio, et al.Andrew Waterhouse, Shintaro Katayama, Katharine Irvine, David Hume, Alistair Forrest, Harukazu Suzuki, Piero Carninci, Yoshihide Hayashizaki, Carsten Daub posted to web_resource regulation functional_genomics fantom by jfr on 2009-11-23 09:10:33 as along with 7 people rdiaz YukaH tonamswish guhjy natstreet druvus dolchan
	Integrating sequence, evolution and functional genomics in regulatory genomics. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), 202. by Martin Vingron, Alvis Brazma, Richard Coulson, et al.Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen posted to functional_analysis genomics motif regulation review by jfr on 2009-06-16 16:59:24 as along with 5 people reyez cassj pawelszczesny natstreet druvus
	rHVDM: an R package to predict the activity and targets of a transcription factor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 3. (1 February 2009), pp. 419-420. by M. Barenco, E. Papouli, S. Shah, D. Brewer, C. J. Miller, M. Hubank posted to bioconductor r regulation software tbfs by jfr on 2009-04-20 10:35:43 as along with 6 people frohike natstreet druvus renatomilani nuin guhjy
	Module networks revisited: computational assessment and prioritization of model predictions [My Copy] Bioinformatics, Vol. 25, No. 4. (15 February 2009), pp. 490-496. by Anagha Joshi, Riet De Smet, Kathleen Marchal, Yves Van de Peer, Tom Michoel posted to module_detection network regulation by jfr on 2009-04-15 13:57:54 as along with 12 people ptrobajo TRHvidsten guhjy tvdbulck mhamada roys zufar rdiaz druvus verdicchio imina dolchan
	Fast calculation of pairwise mutual information for gene regulatory network reconstruction. [My Copy] Computer methods and programs in biomedicine, Vol. 94, No. 2. (May 2009), pp. 177-180. by P. Qiu, A. J. Gentles, S. K. Plevritis posted to mutual_information network regulation by jfr on 2009-04-14 11:14:09 as along with 1 person frohike
	Finding microRNA regulatory modules in human genome using rule induction [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008) by Dang Tran, Kenji Satou, Tu Ho posted to mirna module_detection regulation by jfr on 2009-04-14 10:57:37 as along with 3 people and 1 group heliopais mtagaya pengchy microRNA
	Positional distribution of human transcription factor binding sites. [My Copy] Nucleic acids research (25 October 2008) by Mark Koudritsky, Eytan Domany posted to regulation tfbs by jfr on 2009-04-07 15:44:48 as along with 9 people and 2 groups daforerog jforman ghattem barriot fpattyn nklee maximilianh idonaldson nuin SIMR bioinformatics BenosLab
	A Primer on Regression Methods for Decoding cis-Regulatory Logic [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000269. by Debopriya Das, Matteo Pellegrini, Joe W. Gray posted to plos_primer regulation by jfr on 2009-04-06 17:23:31 as along with 12 people Zephyrus orzenil daforerog TRHvidsten rdiaz natstreet druvus Borelli rdowell dolchan xinhe2 WanderingAengus
	MotifMap: a human genome-wide map of candidate regulatory motif sites [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 167-174. by Xiaohui Xie, Paul Rigor, Pierre Baldi posted to motif regulation by jfr on 2009-03-23 16:30:16 as along with 11 people jakebiesinger kmdaily guhjy wowalz ilyashl abizar heliopais nklee idonaldson nuin djkt
	Chromatin structure analyses identify miRNA promoters. [My Copy] Genes & development, Vol. 22, No. 22. (15 November 2008), pp. 3172-3183. by Fatih Ozsolak, Laura L. Poling, Zhengxin Wang, et al.Hui Liu, X. Shirley Liu, Robert G. Roeder, Xinmin Zhang, Jun S. Song, David E. Fisher posted to chromatin mirna regulation by jfr on 2009-03-18 15:11:10 as along with 11 people and 2 groups danaiancu hrogers cisevol gdb maximilianh tonamswish heliopais samgj emptyhb valeriehilgers pengchy BergmanLab microRNA
	Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model [My Copy] Bioinformatics, Vol. 25, No. 3. (1 February 2009), pp. 387-393. by Je-Gun Joung, Zhangjun Fei posted to mirna regulation by jfr on 2009-03-16 16:25:07 as along with 7 people and 1 group tonamswish TRHvidsten megraw tmmurali mhamada natstreet druvus microRNA
	Biological principles of microRNA-mediated regulation: shared themes amid diversity [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 831-842. by Alex S. Flynt, Eric C. Lai posted to mirna regulation review by jfr on 2009-02-23 11:08:18 as along with 13 people and 4 groups qfwills valeriehilgers guhjy Zephyrus dakelley heliopais giovenko natstreet druvus stajich ealloza dchughes pengchy microRNA database Roswell Cancer Crosstalk microRNA Mycology
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to breast_cancer integration network regulation tbfs by jfr on 2009-01-13 10:37:25 as along with 5 people Zephyrus Borelli druvus xili03 pengchy
	FunNet: an integrative tool for exploring transcriptional interactions. [My Copy] Bioinformatics (Oxford, England) (17 September 2008) by Edi Prifti, Jean-Daniel D. Zucker, Karine Clement, Corneliu Henegar posted to gene_interaction network regulation software by jfr on 2009-01-09 12:08:54 as along with 2 people fhalbrit guhjy
	Predicting gene targets of perturbations via network-based filtering of mRNA expression compendia [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2482-2490. by Elissa J. Cosgrove, Yingchun Zhou, Timothy S. Gardner, Eric D. Kolaczyk posted to network regulation by jfr on 2009-01-08 13:57:58 as along with 2 people guhjy ptrobajo
	Visualization, documentation, analysis, and communication of large-scale gene regulatory networks. [My Copy] Biochimica et biophysica acta, Vol. 1789, No. 4. (6 April 2009), pp. 363-374. by W. J. Longabaugh, E. H. Davidson, H. Bolouri posted to network regulation software visualization by jfr on 2008-12-05 14:42:40 as along with 2 people druvus guhjy
	Human-specific gain of function in a developmental enhancer. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350. by Shyam Prabhakar, Axel Visel, Jennifer A. Akiyama, et al.Malak Shoukry, Keith D. Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R. Fitzpatrick, Veena Afzal, Len A. Pennacchio, Edward M. Rubin, James P. Noonan posted to mutation regulation by jfr on 2008-11-20 09:39:01 as along with 14 people and 1 group paulrigor Annab Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau djkt natstreet isimpson maximilianh caseybrown eskay Roswell Cancer Crosstalk
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted to mutation regulation by jfr on 2008-11-20 09:38:07 as along with 16 people and 4 groups mjoach daveGerrard cisevol rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Ema Zephyrus djkt natstreet isimpson maximilianh caseybrown BergmanLab TranscriptionalRegulationWithThermodynamicModels GEB Roswell Cancer Crosstalk
	GENETICS: Enhancing Gene Regulation [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1300-1301. by Gregory A. Wray, Courtney C. Babbitt posted to comment mutation regulation by jfr on 2008-11-20 09:37:00 as along with 7 people and 1 group huiminC oelemento sebastien_vigneau bpcusack Ema gracio isimpson BenosLab
	Ab initio identification of functionally interacting pairs of cis-regulatory elements. [My Copy] Genome research, Vol. 18, No. 10. (October 2008), pp. 1643-1651. by B. A. Friedman, M. B. Stadler, N. Shomron, Y. Ding, C. B. Burge posted to gene_pairs regulation by jfr on 2008-11-17 14:58:22 as along with 2 people dandaman maximilianh
	Regulatory Circuit of Human MicroRNA Biogenesis. [My Copy] PLoS Comput Biol, Vol. 3, No. 4. (20 April 2007) by Ji Lee, Zhihua Li, Rachel Brower-Sinning, Bino John posted to mirna regulation by jfr on 2008-11-10 14:22:34 as along with 8 people and 2 groups daforerog tardigrade andersbj mtagaya uz_labu_laimi jayster4 heliopais maralena Bioinformatics microRNA
	Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells [My Copy] Cell, Vol. 134, No. 3. (08 August 2008), pp. 521-533. by Alexander Marson, Stuart S. Levine, Megan F. Cole, et al.Garrett M. Frampton, Tobias Brambrink, Sarah Johnstone, Matthew G. Guenther, Wendy K. Johnston, Marius Wernig, Jamie Newman posted to mirna regulation tfbs by jfr on 2008-10-22 14:33:46 as along with 13 people and 1 group danaiancu gbloeb mtagaya djkt valeriehilgers inesdesantiago heliopais ealloza megraw bootsy pengchy maralena gdb microRNA
	Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. [My Copy] PLoS ONE, Vol. 3, No. 7. (2008) by J. Winter, S. Roepcke, S. Krause, et al.E. C. Müller, A. Otto, M. Vingron, S. Schweiger posted to 3utr ephb regulation by jfr on 2008-09-30 11:13:38 as along with 1 person maximilianh
	Unraveling transcriptional regulatory programs by integrative analysis of microarray and transcription factor binding data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1874-1880. by H. Li, M. Zhan posted to integration microarray_analysis regulation tfbs by jfr on 2008-09-29 14:23:18 as along with 5 people bertelsen TRHvidsten guhjy icecrown ealloza
	Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647. by Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge posted to mirna regulation by jfr on 2008-09-04 15:17:55 as along with 15 people and 1 group frohike danaiancu bertelsen hcoller tonamswish ivanek valeriehilgers heliopais dchughes djkt lisa1 bootsy emptyhb faion daforerog microRNA
	Multilevel Regulation of Gene Expression by MicroRNAs [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1789-1790. by Eugene V. Makeyev, Tom Maniatis posted to mirna regulation by jfr on 2008-09-03 14:06:52 as along with 8 people and 1 group danaiancu valeriehilgers guhjy inesdesantiago ealloza heliopais emptyhb giovenko microRNA
	Gene Regulation by Transcription Factors and MicroRNAs [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1785-1786. by Oliver Hobert posted to mirna regulation by jfr on 2008-09-03 13:27:29 as along with 14 people and 1 group tonamswish danaiancu megraw valeriehilgers guhjy inesdesantiago ealloza zwang biomcgary heliopais emptyhb maralena bootsy siebert microRNA
	Coupling and coordination in gene expression processes: a systems biology view. [My Copy] Nat Rev Genet (11 December 2007) by Suzanne Komili, Pamela A A. Silver posted to regulation review systems_biology by jfr on 2008-09-03 10:57:31 as along with 9 people isimpson guhjy tmmurali margaritis bootsy cabbagezs Ema renatomilani klo
	Fast Network Component Analysis (FastNCA) for gene regulatory network reconstruction from microarray data. [My Copy] Bioinformatics (Oxford, England) (9 April 2008) by Chunqi Chang, Zhi Ding, Yeung Sam S. Hung, Peter Chin Wan C. Fung posted to network regulation software by jfr on 2008-06-17 16:42:35 as along with 3 people guhjy roys AbnerCYH
	Inter- and intra-combinatorial regulation by transcription factors and microRNAs [My Copy] BMC Genomics, Vol. 8 (30 October 2007), 396. by Yiming Zhou, John Ferguson, Joseph T. Chang, Yuval Kluger posted to mirna regulation tfbs by jfr on 2008-06-11 09:33:33 as along with 6 people and 1 group mtagaya eckart_bindewald maralena bootsy heliopais hpaces microRNA
	Computational modeling of post-transcriptional gene regulation by microRNAs. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 15, No. 3. (11 April 2008), pp. 305-316. by R. Khanin, V. Vinciotti posted to methodology mirna regulation by jfr on 2008-05-05 15:48:09 as along with 7 people and 1 group ealloza eckart_bindewald maralena guhjy bootsy heliopais pengchy microRNA
	Identifying synergistic regulation involving c-Myc and sp1 in human tissues. [My Copy] Nucleic Acids Res, Vol. 35, No. 4. (2007), pp. 1098-1107. by F. Parisi, P. Wirapati, F. Naef posted to chip-chip gene_expression integration regulation by jfr on 2008-05-04 23:42:17 as
	Indirect genomic effects on survival from gene expression data [My Copy] Genome Biology, Vol. 9 (22 March 2008), R58. by Egil Ferkingstad, Arnoldo Frigessi, Heidi Lyng posted to gene_expression methodology regulation by jfr on 2008-05-04 22:16:56 as along with 1 person rdiaz
	Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. [My Copy] Genome biology, Vol. 8, No. 3. (26 March 2007), R43. by Helder I. Nakaya, Paulo P. Amaral, Rodrigo Louro, et al.André Lopes, Angela A. Fachel, Yuri B. Moreira, Tarik A. El-Jundi, Aline M. da Silva, Eduardo M. Reis, Sergio Verjovski-Almeida posted to antisense genomics regulation by jfr on 2008-04-18 14:17:39 as along with 3 people and 1 group mkiyer myrtilus djkt Chinnaiyan Lab
	Inferring biological functions and associated transcriptional regulators using gene set expression coherence analysis [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (17 November 2007), 453. by Tae M. Kim, Yeun J. Chung, Mun G. Rhyu, Myeong H. Jung posted to module_detection regulation by jfr on 2008-02-06 13:12:52 as along with 3 people ipark-kaist ealloza heliopais
	A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments [My Copy] BMC Bioinformatics, Vol. 8 (29 August 2007), 317. by Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai posted to gene_interaction regulation by jfr on 2008-02-04 13:33:13 as along with 4 people SaraNasser mbehbah1 guhjy shigepong
	A graph-based approach to systematically reconstruct human transcriptional regulatory modules [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i577-586. by Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong J. Zhou posted to module_detection network regulation by jfr on 2008-02-04 10:32:43 as along with 7 people vingron kengg cswinburne jiny shigepong dragonrez tmmurali
	Construction, visualisation, and clustering of transcription networks from microarray expression data. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 2032-2042. by Tom C. Freeman, Leon Goldovsky, Markus Brosch, et al.Stijn van Dongen, Pierre Mazière, Russell J. Grocock, Shiri Freilich, Janet Thornton, Anton J. Enright posted to network regulation software by jfr on 2007-12-18 12:55:38 as along with 9 people ptrobajo jwhitney nolodie guhjy sebastien_vigneau giovanni shigepong heliopais waszak
	Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis [My Copy] Genome Biology, Vol. 8 (11 May 2007), R77. by Yingchun Liu, Markus Ringner posted to integration regulation by jfr on 2007-12-07 13:25:22 as along with 1 person ptrobajo
	Regulatory networks: linking microarray data to systems biology. [My Copy] Mech Ageing Dev, Vol. 128, No. 1. (January 2007), pp. 168-172. by T. Werner posted to regulation review systems_biology by jfr on 2007-07-10 17:20:20 as along with 1 person heliopais
	Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles [My Copy] PLoS Biol, Vol. 5, No. 1. (9 January 2007), e8. by Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden, et al.Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J. Collins, Timothy S. Gardner posted to integration network regulation by jfr on 2007-06-26 14:28:51 as along with 8 people and 2 groups frohike icases teuder nickluscombe aswin heliopais austin roys EBI-regulation TNT
	Genetic variation in putative regulatory loci controlling gene expression in breast cancer. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 20. (16 May 2006), pp. 7735-7740. by V. N. Kristensen, H. Edvardsen, A. Tsalenko, et al.S. H. Nordgard, T. Sørlie, R. Sharan, A. Vailaya, A. Ben-Dor, P. E. Lønning, S. Lien, S. Omholt, A. C. Syvänen, Z. Yakhini, A. L. Børresen-Dale posted to breast_cancer regulation snp by jfr on 2007-02-20 16:49:13 as
	Using local gene expression similarities to discover regulatory binding site modules [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (17 November 2006), 505. by Bartek Wilczynski, Torgeir Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis posted to regulation methodology by jfr on 2007-01-16 18:17:49 as along with 4 people TRHvidsten wowalz dquest smiddha
	Systematic discovery of regulatory motifs in human promoters and 3[prime] UTRs by comparison of several mammals [My Copy] Nature, Vol. aop, No. current. (27 February 2005) by Xiaohui Xie, Jun Lu, E. J. Kulbokas, et al.Todd R. Golub, Vamsi Mootha, Kerstin Lindblad-Toh, Eric S. Lander, Manolis Kellis posted to regulation promoters genomics by jfr on 2007-01-12 15:38:18 as along with 28 people and 4 groups Dulce wowalz maximilianh_otx hagechouchin443 sterovetta kieran101 snuppepuppan BioGeek briann jtextori tmmurali okarsligil balajis lyongu eckart_bindewald mtagaya adepace fisherp nickluscombe panetebrother smiddha franklin oscarluoinau heliopais ale emptyhb maralena mariakmejia Bioinformatics EisenLab microRNA EBI-regulation
	Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues. [My Copy] Nucleic Acids Res (18 September 2006) by Xueping Yu, Jimmy Lin, Donald J J. Zack, Jiang Qian posted to regulation by jfr on 2007-01-11 14:35:25 as along with 2 people and 1 group tuck nickluscombe EBI-regulation
	Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data [My Copy] BMC Bioinformatics, Vol. 7 (04 July 2006), 330. by Seon-Young Kim, Yongsung Kim posted to tfbs regulation methodology integration by jfr on 2007-01-11 14:12:54 as along with 3 people heliopais xwbcn Ao_Li2007
	Beyond microarrays: Finding key transcription factors controlling signal transduction pathways [My Copy] BMC Bioinformatics, Vol. 7, No. Suppl 2. (2006) by Alexdander Kel, Nico Voss, Ruy Jauregui, Olga K. Margoulis, Edgar Wingender posted to tfbs regulation by jfr on 2007-01-10 15:57:28 as along with 2 people gpalidwor SeungjoonOh
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to systems_biology regulation methodology by jfr on 2007-01-10 15:54:34 as along with 18 people frohike dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit kaarsinogen mbehbah1 druvus giovenko ptrobajo kentsis tmmurali shigepong natstreet heliopais

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breast_cancer	474
review	345
mirna	341
software	275
classification	272
colon_cancer	230
gene_expression	176
methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
bioinformatics	121
clustering	121
feature_selection	106
meta-analysis	97
affy	86
database	81
therapy	80
mirna_target	76
array-cgh	69
crc_bib	69
gene_set_analysis	69
low_level	66
regulation	66
systems_biology	63
rt-pcr	62
pathway_analysis	60
genomics	59
subtypes	58
annotation	57
snp-arrays	57
comment	52
quality_control	48
metastasis	46
normalization	46
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
estrogen	40
microarray_analysis	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
alternative_splicing	35
markers	35
progression	35
protein_interaction	35
fdr	34
snp	33
methylation	32
r	30
class_discovery	28
mutation	28
standards	28
tamoxifen	28
exon_arrays	25
jfrbib	24
microarray_protocol	23
mir17-92	23
ovarian_cancer	23
two-color	23
experiment_design	22
pathway	22
brca	21
co-expression	21
comparison	21
model	20
survival_analysis	20
tfbs	20
kras	19
p53	19
treatment	19
functional_analysis	18
platform_comparison	18
technology	17
chip-chip	16
evaluation	16
illumina	16
jfrbib04-09	16
module_detection	16
multiple_testing	16
stem_cell	16
antisense	15
biomarker	15
nmf	15
reproducible_research	15
text-mining	15
basal_subtype	14
bio_signature	14
erbb	14
sequencing	14
egfr	13
lung_cancer	13
rna_quality	13
stageii	13
staging	13
tma	13
cnv	12
gene_ontology	12
genotyping	12
maqc	12
marker	12
cell_line	11
drug_discovery	11
gene_lists	11
loh	11
missing_values	11
proliferation	11
protocol	11
semantic_web	11
control_genes	10
disease_genes	10
genome_browser	10
pten	10
tissue_specificity	10
visualization	10
immunohistochemistry	9
mirna_regulation	9
msi	9
probe_design	9
segmentation	9
tgfb	9
boutique_arrays	8
can_genes	8
chip-seq	8
consensus_clustering	8
e2f1	8
inter-laboratory	8
personalized_medicine	8
sample_size	8
time-course	8
18q_loh	7
chemotherapy	7
editorial	7
lymphoma	7
myc	7
tiling_array	7
validation	7
community	6
correlation	6
gene_interaction	6
graphs	6
hpc	6
leukemia	6
mir21	6
motif	6
nci60	6
non-coding	6
ontology	6
plos_rules	6
promoters	6
read_mapping	6
serum	6
stem	6
cin	5
cross-platform	5
functional_genomics	5
gene_pairs	5
grid_computing	5
gwas	5
her2	5
machine_learning	5
plos_primer	5
plos_start	5
prioritization	5
prostate_cancer	5
radiation	5
survival	5
trial	5
biobank	4
data_curation	4
er	4
functional_classification	4
go	4
grading	4
image_analysis	4
lims	4
mir34	4
mirna_cluster	4
pooling	4
public_data	4
resource	4
web_services	4
agilent	3
apc	3
bim	3
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chromatin	3
confounders	3
copa	3
cross-study	3
er-positive	3
evolution	3
glioblastoma	3
hapmap	3
interaction	3
loops	3
mage	3
mass_spec	3
micro_environment	3
mir192	3
ontologies	3
open-source	3
outlier	3
pca	3
pik3ca	3
pr	3
primer	3
roc	3
sage	3
small_molecule	3
sop	3
stability	3
stroma	3
svm	3
triple_negative	3
tutorial	3
web_server	3
wnt	3
20q	2
8q24	2
alignment	2
batch-effect	2
bcatenin	2
caching	2
cdk8	2
cell_cycle	2
cetuximab	2
chemo	2
compression	2
dfs	2
diagnostic	2
differential_expression	2
dna_damage	2
ephb	2
epigenetics	2
filtering	2
flow_cytometry	2
gene_fusion	2
guidelines	2
in-situ	2
letter	2
local_recurrence	2
low-level	2
luminal_subtype	2
lymphocytes	2
meeting_report	2
mir20a	2
mir215	2
mutual_information	2
ngs	2
oncomine	2
permutations	2
priors	2
projection	2
protein_microarray	2
protein_networks	2
qtl	2
ranked_lists	2
recommendation	2
rin	2
semi-supervised	2
serm	2
smad	2
snp_arrays	2
stageiii	2
sweave	2
target	2
tbfs	2
thyroid	2
translational	2
upd	2
web_resource	2
3utr	1
454	1
aging	1
akt	1
apoptosis	1
aroma	1
asco	1
assembly	1
association_studies	1
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news	1
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p21	1
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target_discovery	1
taxane	1
tcga	1
tissue_origin	1
translation	1
translocation	1
ucs	1
wiki	1
xml	1

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