jfr's rt-pcr [64 articles] Export

Recent papers added to jfr's library classified by the tag rt-pcr. You can also see everyone's rt-pcr.

	Estrogen- and progesterone-receptor status in ECOG 2197: comparison of immunohistochemistry by local and central laboratories and quantitative reverse transcription polymerase chain reaction by central laboratory. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 26, No. 15. (20 May 2008), pp. 2473-2481. by S. S. Badve, F. L. Baehner, R. P. Gray, et al.B. H. Childs, T. Maddala, M. L. Liu, S. C. Rowley, S. Shak, E. D. Perez, L. J. Shulman, S. Martino, N. E. Davidson, G. W. Sledge, L. J. Goldstein, J. A. Sparano posted to rt-pcr pr inter-laboratory immunohistochemistry er breast_cancer by jfr on 2009-12-02 10:17:12 as along with 1 person horishin
	Unreliable real-time PCR analysis of human endogenous retrovirus-W (HERV-W) RNA expression and DNA copy number in multiple sclerosis. [My Copy] AIDS research and human retroviruses, Vol. 25, No. 3. (March 2009) by Jeremy A. Garson, Jim F. Huggett, Stephen A. Bustin, et al.Michael W. Pfaffl, Vladimir Benes, Jo Vandesompele, Gregory L. Shipley posted to standards rt-pcr quality_control letter by jfr on 2009-12-02 10:03:36 as
	RDML: structured language and reporting guidelines for real-time quantitative PCR data. [My Copy] Nucleic acids research, Vol. 37, No. 7. (17 April 2009), pp. 2065-2069. by Steve Lefever, Jan Hellemans, Filip Pattyn, et al.Daniel R. Przybylski, Chris Taylor, René Geurts, Andreas Untergasser, Jo Vandesompele, RDML consortium posted to xml standards rt-pcr by jfr on 2009-11-27 13:20:42 as along with 3 people daforerog Vincent_Rouilly guhjy
	A novel and universal method for microRNA RT-qPCR data normalization. [My Copy] Genome biology, Vol. 10, No. 6. (16 June 2009), R64. by Pieter Mestdagh, Pieter Van Vlierberghe, An De Weer, et al.Daniel Muth, Frank Westermann, Frank Speleman, Jo Vandesompele posted to rt-pcr normalization mirna by jfr on 2009-11-27 11:21:04 as along with 10 people and 2 groups daforerog fishtank megraw guhjy gdb mlog lwaldron valeriehilgers Stew druvus microRNA Bioinformatics - CRUK
	Evaluation of microarray preprocessing algorithms based on concordance with RT-PCR in clinical samples. [My Copy] PloS one, Vol. 4, No. 5. (21 May 2009), e5645. by Balazs Gyorffy, Bela Molnar, Hermann Lage, Zoltan Szallasi, Aron C. Eklund posted to rt-pcr low_level affy by jfr on 2009-11-18 13:21:23 as along with 2 people rdiaz bertelsen
	Reverse transcription-quantitative polymerase chain reaction: description of a RIN-based algorithm for accurate data normalization. [My Copy] BMC molecular biology, Vol. 10 (15 April 2009), 31. by Alexandre Ho-Pun-Cheung, Caroline Bascoul-Mollevi, Eric Assenat, et al.Florence Boissière-Michot, Frédéric Bibeau, Dominic Cellier, Marc Ychou, Evelyne Lopez-Crapez posted to rt-pcr rna_quality rin normalization control_genes by jfr on 2009-11-16 13:34:56 as along with 1 person guhjy
	The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. [My Copy] Clinical chemistry, Vol. 55, No. 4. (1 April 2009), pp. 611-622. by Stephen A. Bustin, Vladimir Benes, Jeremy A. Garson, et al.Jan Hellemans, Jim Huggett, Mikael Kubista, Reinhold Mueller, Tania Nolan, Michael W. Pfaffl, Gregory L. Shipley, Jo Vandesompele, Carl T. Wittwer posted to standards rt-pcr by jfr on 2009-11-16 13:18:45 as along with 9 people mfgreen daforerog GeeSharpMinor yagyav mlog Vincent_Rouilly guhjy cchand booker
	Ki67 index, HER2 status, and prognosis of patients with luminal B breast cancer. [My Copy] Journal of the National Cancer Institute, Vol. 101, No. 10. (20 May 2009), pp. 736-750. by Maggie C. Cheang, Stephen K. Chia, David Voduc, et al.Dongxia Gao, Samuel Leung, Jacqueline Snider, Mark Watson, Sherri Davies, Philip S. Bernard, Joel S. Parker, Charles M. Perou, Matthew J. Ellis, Torsten O. Nielsen posted to subtypes rt-pcr proliferation pr luminal_subtype immunohistochemistry her2 er breast_cancer by jfr on 2009-11-15 14:43:06 as along with 1 person zufar
	Data-driven normalization strategies for high-throughput quantitative RT-PCR. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (19 April 2009), 110. by Jessica C. Mar, Yasumasa Kimura, Kate Schroder, et al.Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David Hume, John Quackenbush posted to rt-pcr r normalization bioconductor by jfr on 2009-11-15 14:37:52 as along with 7 people and 1 group guhjy lwaldron renatomilani trfield shikin druvus natstreet Bioinformatics
	Reliability and reproducibility of a RNA preamplification method for low-density array analysis from formalin-fixed paraffin-embedded breast cancer samples. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 112-118. by Paola Ciotti, Anna Garuti, Alberto Ballestrero, et al.Gabriella Cirmena, Maurizio Chiaramondia, Paola Baccini, Emilia Bellone, Paola Mandich posted to technology rt-pcr ffpe by jfr on 2009-11-13 11:27:46 as
	Selection of REFERENCE genes for normalization of qRT-PCR data derived from FFPE breast tumors. [My Copy] Diagnostic molecular pathology : the American journal of surgical pathology, part B, Vol. 18, No. 2. (June 2009), pp. 103-107. by Suzanne Drury, Helen Anderson, Mitch Dowsett posted to rt-pcr ffpe control_genes by jfr on 2009-11-13 11:25:30 as
	High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA. [My Copy] Nucleic acids research, Vol. 36, No. 21. (21 December 2008) by P. Mestdagh, T. Feys, N. Bernard, et al.S. Guenther, C. Chen, F. Speleman, J. Vandesompele posted to technology rt-pcr mirna by jfr on 2009-11-09 14:45:52 as along with 2 people and 1 group natstreet martin-novak microRNA
	Gene expression patterns in formalin-fixed, paraffin-embedded core biopsies predict docetaxel chemosensitivity in breast cancer patients. [My Copy] Breast cancer research and treatment, Vol. 108, No. 2. (March 2008), pp. 233-240. by J. C. Chang, A. Makris, M. C. Gutierrez, et al.S. G. Hilsenbeck, J. R. Hackett, J. Jeong, M. L. Liu, J. Baker, K. Clark-Langone, F. L. Baehner, K. Sexton, S. Mohsin, T. Gray, L. Alvarez, G. C. Chamness, C. K. Osborne, S. Shak posted to breast_cancer classification gene_expression rt-pcr therapy by jfr on 2009-06-24 10:01:34 as
	Selecting control genes for RT-QPCR using public microarray data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 42. by Vlad Popovici, Darlene R. Goldstein, Janine Antonov, Rolf Jaggi, Mauro Delorenzi, Pratyaksha Wirapati posted to control_genes rt-pcr by jfr on 2009-04-20 12:44:16 as along with 7 people and 1 group daforerog lwaldron Zephyrus guhjy dswan natstreet druvus Bioinformatics
	An investigation of microRNAs mapping to breast cancer related genomic gain and loss regions. [My Copy] Cancer genetics and cytogenetics, Vol. 189, No. 1. (February 2009), pp. 15-23. by S. D. Selcuklu, M. C. Yakicier, A. E. Erson posted to breast_cancer cell_line copy-number mirna rt-pcr by jfr on 2009-04-14 10:47:18 as along with 1 group microRNA
	qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1549-1551. by Christian Ritz, Andrej-Nikolai N. Spiess posted to r rt-pcr software by jfr on 2009-03-23 15:34:11 as along with 3 people natstreet druvus guhjy
	A five-gene signature and clinical outcome in non-small-cell lung cancer. [My Copy] N Engl J Med, Vol. 356, No. 1. (4 January 2007), pp. 11-20. by H. Y. Chen, S. L. Yu, C. H. Chen, et al.G. C. Chang, C. Y. Chen, A. Yuan, C. L. Cheng, C. H. Wang, H. J. Terng, S. F. Kao, W. K. Chan, H. N. Li, C. C. Liu, S. Singh, W. J. Chen, J. J. Chen, P. C. Yang posted to classification lung_cancer rt-pcr by jfr on 2009-03-23 14:00:59 as along with 2 people guhjy frohike
	A novel approach for reliable microarray analysis of microdissected tumor cells from formalin-fixed and paraffin-embedded colorectal cancer resection specimens [My Copy] Journal of Molecular Medicine by Silke Lassmann, Clemens Kreutz, Anja Schoepflin, Ulrich Hopt, Jens Timmer, Martin Werner posted to colon_cancer ffpe microarray_technology quality_control rt-pcr by jfr on 2009-03-18 15:23:28 as
	The detection of differentially expressed microRNAs from the serum of ovarian cancer patients using a novel real-time PCR platform. [My Copy] Gynecologic oncology (25 October 2008) by Kimberly E E. Resnick, Hansjuerg Alder, John P P. Hagan, Debra L L. Richardson, Carlo M M. Croce, David E E. Cohn posted to mirna ovarian_cancer rt-pcr by jfr on 2009-03-10 16:24:10 as along with 1 person and 1 group jsnowdon microRNA
	Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods [My Copy] BMC Biotechnology, Vol. 8 (11 September 2008), 69. by Robert A. Ach, Hui Wang, Bo Curry posted to agilent microarray_protocol microrna rt-pcr technology by jfr on 2009-01-08 13:14:36 as along with 7 people and 1 group mchelen felsani jsnowdon druvus pengchy guhjy giovenko microRNA
	Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues [My Copy] RNA, Vol. 14, No. 5. (28 May 2008), pp. 844-852. by Heidi J. Peltier, Gary J. Latham posted to control_genes mirna normalization rt-pcr by jfr on 2008-11-26 17:58:44 as along with 2 people and 1 group lwaldron Haze microRNA
	Agreement in breast cancer classification between microarray and quantitative reverse transcription PCR from fresh-frozen and formalin-fixed, paraffin-embedded tissues. [My Copy] Clinical chemistry, Vol. 53, No. 7. (July 2007), pp. 1273-1279. by Michael Mullins, Laurent Perreard, John F. Quackenbush, et al.Nicholas Gauthier, Steven Bayer, Matthew Ellis, Joel Parker, Charles M. Perou, Aniko Szabo, Philip S. Bernard posted to breast_cancer ffpe microarray_technology rt-pcr by jfr on 2008-11-26 17:54:32 as along with 1 person and 1 group Zephyrus Breast Cancer Reading Club
	Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method [My Copy] Methods, Vol. 25, No. 4. (December 2001), pp. 402-408. by K. Livak posted to methodology rt-pcr by jfr on 2008-11-26 15:52:37 as along with 11 people poojamaj gwallau Annab mtruksa soojinclass1 GeeSharpMinor hubcite dayjm maxell rschulz min013
	Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer [My Copy] BMC Molecular Biology, Vol. 9 (21 August 2008), 76. by Pamela A. Davoren, Roisin E. Mcneill, Aoife J. Lowery, Michael J. Kerin, Nicola Miller posted to control_genes mirna normalization rt-pcr technology by jfr on 2008-11-26 11:03:51 as along with 1 group microRNA
	Identification of genes for normalization of real-time RT-PCR data in breast carcinomas [My Copy] BMC Cancer, Vol. 8 (22 January 2008), 20. by Maria B. Lyng, Anne-Vibeke Laenkholm, Niels Pallisgaard, Henrik J. Ditzel posted to breast_cancer control_genes normalization rt-pcr by jfr on 2008-11-26 10:59:30 as along with 1 person lwaldron
	GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR. [My Copy] Physiological genomics, Vol. 30, No. 3. (20 August 2007), pp. 363-370. by M. Kidd, B. Nadler, S. Mane, et al.G. Eick, M. Malfertheiner, M. Champaneria, R. Pfragner, I. Modlin posted to control_genes normalization rt-pcr by jfr on 2008-11-26 10:28:16 as along with 1 person lwaldron
	Analyzing real-time PCR data by the comparative C(T) method. [My Copy] Nature protocols, Vol. 3, No. 6. (2008), pp. 1101-1108. by Thomas D. Schmittgen, Kenneth J. Livak posted to methodology protocol rt-pcr by jfr on 2008-11-20 10:44:23 as along with 3 people shimi002 daforerog guhjy
	Tissues from routine pathology archives are suitable for microRNA analyses by quantitative PCR. [My Copy] Journal of clinical pathology, Vol. 62, No. 1. (1 January 2009), pp. 84-88. by U. Siebolts, H. Varnholt, U. Drebber, H-P P. Dienes, C. Wickenhauser, M. Odenthal posted to ffpe mirna rt-pcr technology by jfr on 2008-10-30 16:34:55 as along with 3 people lwaldron guhjy jsnowdon
	Impact of RNA quality on reference gene expression stability. [My Copy] BioTechniques, Vol. 39, No. 1. (July 2005) by C. A. Pérez-Novo, C. Claeys, F. Speleman, P. Van Cauwenberge, C. Bachert, J. Vandesompele posted to rna_quality rt-pcr by jfr on 2008-09-24 13:27:59 as
	Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials. [My Copy] BMC biotechnology, Vol. 8 (06 February 2008), 10. by Jinghuan Li, Paul Smyth, Susanne Cahill, et al.Karen Denning, Richard Flavin, Sinead Aherne, Marco Pirotta, Simone M. Guenther, John J. O'Leary, Orla Sheils posted to ffpe protocol rt-pcr by jfr on 2008-09-24 13:25:28 as along with 1 person guhjy
	In situ detection of precursor and mature microRNAs in paraffin embedded, formalin fixed tissues and cell preparations☆ [My Copy] Methods In MicroRNAs: Part B, Vol. 44, No. 1. (January 2008), pp. 39-46. by Gerard J. Nuovo posted to in-situ mirna rt-pcr technology by jfr on 2008-09-04 11:03:57 as along with 1 person guhjy
	Biomarker discovery for colon cancer using a 761 gene RT-PCR assay [My Copy] BMC Genomics, Vol. 8 (15 August 2007), 279. by Kim M. Clark-Langone, Jenny Y. Wu, Chithra Sangli, et al.Angela Chen, James L. Snable, Anhthu Nguyen, James R. Hackett, Joffre Baker, Greg Yothers, Chungyeul Kim, Maureen T. Cronin posted to classification colon_cancer rt-pcr by jfr on 2008-08-05 17:35:59 as along with 1 person guhjy
	Twenty-five years of quantitative PCR for gene expression analysis. [My Copy] BioTechniques, Vol. 44, No. 5. (April 2008), pp. 619-626. by Heather D. VanGuilder, Kent E. Vrana, Willard M. Freeman posted to review rt-pcr by jfr on 2008-08-05 17:00:35 as along with 6 people daforerog Annab shikin GeeSharpMinor fhsantanna guhjy
	Individualized care for patients with cancer - a work in progress. [My Copy] The New England journal of medicine, Vol. 351, No. 27. (30 December 2004), pp. 2865-2867. by R. C. Bast, G. N. Hortobagyi posted to breast_cancer comment rt-pcr therapy by jfr on 2008-07-21 18:11:16 as
	Real-time quantification of microRNAs by stem-loop RT-PCR. [My Copy] Nucleic Acids Res, Vol. 33, No. 20. (2005) by C. Chen, D. A. Ridzon, A. J. Broomer, et al.Z. Zhou, D. H. Lee, J. T. Nguyen, M. Barbisin, N. L. Xu, V. R. Mahuvakar, M. R. Andersen, K. Q. Lao, K. J. Livak, K. J. Guegler posted to mirna rt-pcr microarray_technology by jfr on 2008-06-27 13:26:48 as along with 4 people and 1 group giovenko imouthesmp cdawson robertlsons GIG
	miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. [My Copy] BMC molecular biology, Vol. 9 (10 April 2008), 34. by S. Sharbati-Tehrani, B. Kutz-Lohroff, R. Bergbauer, J. Scholven, R. Einspanier posted to mirna rt-pcr microarray_technology by jfr on 2008-06-17 17:49:38 as along with 2 people natstreet guhjy
	The prognostic biomarkers HOXB13, IL17BR, and CHDH are regulated by estrogen in breast cancer. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 13, No. 21. (1 November 2007), pp. 6327-6334. by Z. Wang, S. Dahiya, H. Provencher, et al.B. Muir, E. Carney, K. Coser, T. Shioda, X. J. Ma, D. C. Sgroi posted to breast_cancer marker rt-pcr tamoxifen treatment by jfr on 2008-04-22 08:37:59 as
	Detection limits of several commercial reverse transcriptase enzymes: impact on the low and high abundant transcript levels assessed by quantitative RT-PCR [My Copy] BMC Molecular Biology, Vol. 8 (22 October 2007), 93. by Jean-Philippe Levesque-Sergerie, Mathieu Duquette, Catherine Thibault, Louis Delbecchi, Nathalie Bissonnette posted to rt-pcr by jfr on 2008-02-06 11:44:51 as along with 1 person guhjy
	Estrogen receptor alpha (ERalpha) mRNA copy numbers in immunohistochemically positive-, and negative breast cancer tissues [My Copy] BMC Cancer, Vol. 7 (28 March 2007), 56. by Indira Poola, Qingqi Yue posted to breast_cancer estrogen immunohistochemistry rt-pcr by jfr on 2008-02-05 11:46:15 as along with 1 person Zephyrus
	Statistical Significance of quantitative PCR [My Copy] BMC Bioinformatics, Vol. 8 (20 April 2007), 131. by Yann Karlen, Alan Mcnair, Sebastien Perseguers, Christian Mazza, Nicolas Mermod posted to rt-pcr by jfr on 2007-11-26 18:18:02 as along with 5 people lisa1 natstreet druvus guhjy yevishere
	A new molecular breast cancer subclass defined from a large scale real-time quantitative RT-PCR study [My Copy] BMC Cancer, Vol. 7 (05 March 2007), 39. by Maia Chanrion, Helene Fontaine, Carmen Rodriguez, et al.Vincent Negre, Frederic Bibeau, Charles Theillet, Alain Henaut, Jean-Marie Darbon posted to breast_cancer class_discovery rt-pcr subtypes by jfr on 2007-11-26 10:30:46 as
	Model based analysis of real-time PCR data from DNA binding dye protocols [My Copy] BMC Bioinformatics, Vol. 8 (09 March 2007), 85. by Mariano J. Alvarez, Guillermo J. Vila-Ortiz, Mariano C. Salibe, Osvaldo L. Podhajcer, Fernando J. Pitossi posted to rt-pcr by jfr on 2007-09-12 17:56:24 as along with 2 people guhjy N0092968
	The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when? [My Copy] PLoS ONE, Vol. 2 (2007) by M. T. Gilbert, T. Haselkorn, M. Bunce, et al.J. J. Sanchez, S. B. Lucas, L. D. Jewell, E. V. Marck, M. Worobey posted to ffpe rt-pcr by jfr on 2007-08-02 13:38:42 as along with 1 person guhjy
	Comprehensive algorithm for quantitative real-time polymerase chain reaction. [My Copy] J Comput Biol, Vol. 12, No. 8. (October 2005), pp. 1047-1064. by S. Zhao, R. D. Fernald posted to rt-pcr by jfr on 2007-07-30 16:43:47 as along with 2 people imouthesmp N0092968
	Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by R. Goll, T. Olsen, G. Cui, J. Florholmen posted to rt-pcr by jfr on 2007-07-30 16:42:49 as along with 2 people natstreet druvus
	Reliable gene expression measurements from degraded RNA by quantitative real-time PCR depend on short amplicons and a proper normalization [My Copy] Laboratory Investigation, Vol. aop, No. current. (13 June 2005) by Janine Antonov, Darlene R. Goldstein, Andrea Oberli, et al.Anna Baltzer, Marco Pirotta, Achim Fleischmann, Hans J. Altermatt, Rolf Jaggi posted to ffpe microarray_technology rt-pcr by jfr on 2007-07-30 16:33:25 as
	qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. [My Copy] Genome biology, Vol. 8, No. 2. (09 February 2007), R19. by Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele posted to bioinformatics rt-pcr software by jfr on 2007-06-26 10:19:48 as along with 4 people daforerog ablejec druvus guhjy
	Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes [My Copy] Genome Biology, Vol. 3, No. 7. (18 June 2002) by Jo Vandesompele, Katleen De Preter, Filip Pattyn, et al.Bruce Poppe, Nadine Van Roy, Anne De Paepe, Frank Speleman posted to normalization rt-pcr by jfr on 2007-05-14 14:58:02 as along with 23 people and 2 groups mlog yogita stharward brianb gdb lwaldron soojinclass1 maximilianh renatomilani pflock ArtemPankin guhjy sebastien_vigneau mtruksa xingxu ablejec Yanno ecattell cdawson qfwills aubinhon rschnee olberd Khavkin's lab GIG
	Nature Protocols: Quantification of mRNA using real-time RT-PCR [My Copy] Nature Protocols, Vol. 1, No. 3. (2006), pp. 1559-1582. by T. Nolan, Re Hands, Sa Bustin posted to protocol rt-pcr by jfr on 2007-03-23 14:21:26 as
	Methods for gene expression profiling in clinical trials of adjuvant breast cancer therapy. [My Copy] Clin Cancer Res, Vol. 12, No. 3 Pt 2. (1 February 2006) by S. Paik posted to therapy rt-pcr review ffpe breast_cancer by jfr on 2007-02-06 14:32:12 as

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breast_cancer	477
mirna	348
review	345
software	275
classification	272
colon_cancer	234
gene_expression	176
methodology	169
copy-number	161
network	148
integration	138
microarray_technology	133
bioinformatics	122
clustering	121
feature_selection	106
meta-analysis	97
affy	86
database	82
therapy	80
mirna_target	77
gene_set_analysis	69
array-cgh	69
crc_bib	69
regulation	67
low_level	66
rt-pcr	64
systems_biology	63
genomics	60
pathway_analysis	60
subtypes	58
snp-arrays	57
annotation	57
comment	53
quality_control	49
metastasis	47
normalization	46
mutations	43
deep_sequencing	42
ffpe	41
prognosis	41
microarray_analysis	40
estrogen	40
proteomics	39
cancer	38
bioconductor	37
statistics	37
protein_interaction	35
alternative_splicing	35
progression	35
markers	35
fdr	34
snp	33
methylation	32
r	31
standards	29
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tamoxifen	28
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exon_arrays	25
jfrbib	24
two-color	24
ovarian_cancer	23
mir17-92	23
microarray_protocol	23
pathway	22
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comparison	21
brca	21
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tfbs	20
survival_analysis	20
model	20
kras	20
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treatment	19
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platform_comparison	18
technology	17
multiple_testing	17
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stem_cell	16
jfrbib04-09	16
module_detection	16
evaluation	16
illumina	16
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antisense	15
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nmf	15
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erbb	14
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lung_cancer	13
staging	13
rna_quality	13
stageii	13
egfr	13
tma	13
cell_line	12
cnv	12
marker	12
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maqc	12
genotyping	12
loh	11
drug_discovery	11
gene_lists	11
pten	11
missing_values	11
proliferation	11
protocol	11
semantic_web	11
immunohistochemistry	10
disease_genes	10
visualization	10
genome_browser	10
tissue_specificity	10
control_genes	10
tgfb	10
mirna_regulation	10
msi	9
inter-laboratory	9
probe_design	9
segmentation	9
e2f1	8
can_genes	8
chemotherapy	8
sample_size	8
consensus_clustering	8
chip-seq	8
boutique_arrays	8
personalized_medicine	8
myc	8
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editorial	8
plos_start	7
18q_loh	7
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validation	7
mir21	7
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plos_rules	7
hpc	6
serum	6
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read_mapping	6
promoters	6
stem	6
motif	6
correlation	6
gene_interaction	6
non-coding	6
leukemia	6
community	6
ontology	6
nci60	6
graphs	6
plos_primer	5
radiation	5
cross-platform	5
grid_computing	5
gene_pairs	5
her2	5
trial	5
gwas	5
prostate_cancer	5
functional_genomics	5
survival	5
machine_learning	5
cin	5
prioritization	5
mir34	4
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data_curation	4
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mirna_cluster	4
biobank	4
image_analysis	4
open-source	4
pr	4
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lims	4
mir192	4
grading	4
functional_classification	4
go	4
micro_environment	3
primer	3
bim	3
confounders	3
tutorial	3
mass_spec	3
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small_molecule	3
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apc	3
low-level	3
wnt	3
svm	3
stroma	3
sop	3
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chromatin	3
er-positive	3
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in-situ	3
roc	3
letter	3
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cross-study	3
agilent	3
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triple_negative	3
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biomarkers	3
pca	3
web_server	3
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guidelines	2
lymphocytes	2
ephb	2
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sweave	2
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akt	2
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upd	2
mir215	2
translational	2
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dna_damage	2
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cell_cycle	2
stageiii	2
dfs	2
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snp_arrays	2
target	2
web_resource	2
differential_expression	2
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protein_microarray	2
meeting_report	2
priors	2
rin	2
cetuximab	2
gene_fusion	2
local_recurrence	2
cdk8	2
bayesian	1
invasion	1
assembly	1
oncogene	1
mirna222	1
mir16-1	1
model-based	1
mir199	1
mir135	1
single_cell	1
smad7	1
xml	1
randomization	1
mir449	1
target_discovery	1
est_analysis	1
funding	1
mir126	1
pre-post	1
circulating_tumor_cells	1
braf	1
neural_networks	1
au-rich	1
wiki	1
apoptosis	1
aroma	1
module	1
biclustering	1
beads	1
bmp	1
pancreatic_cancer	1
dcc	1
brain_cancer	1
cross-species	1
association_studies	1
rna-interference	1
taxane	1
er-negative	1
distance	1
melanoma	1
ccnd1	1
nomogram	1
gene_clusters	1
formats	1
454	1
dasl	1
gene_function_prediction	1
python	1
cervical_cancer	1
shrna	1
reproducibility	1
perturbation	1
stem_cells	1
mir31	1
dye_bias	1
p21	1
meta_analysis	1
plasma	1
in_situ_hybridization	1
formalization	1
metastatis	1
passenger_genes	1
met	1
mirna_discovery	1
cancer_hallmarks	1
tissue_origin	1
mir145	1
modules	1
aurora_kinase	1
selection_bias	1
erg	1
3utr	1
power_analysis	1
markup	1
pilot_study	1
ret	1
gene_networks	1
driver_genes	1
metagene	1
cables1	1
mixture_models	1
prb	1
data_mining	1
fgfr2	1
fantom	1
signaling	1
ecm	1
translocation	1
il8	1
mir217	1
concordance	1
simulation	1
mir101	1
graph_approach	1
peripheral_blood	1
news	1
mir203	1
mir15a	1
mcm7	1
genome_assembly	1
resampling	1
transfection	1
tcga	1
mir-106b-25	1
rnai	1
ndrg4	1
ependymoma	1
oncogene_addiction	1
hypoxia	1
mirna221	1
microrna	1
ucs	1
mir155	1
gastric_cancer	1
mir143	1
bambi	1
latex	1
genoty	1
fish	1
disease	1
ensemble	1
dimension_reduction	1
asco	1
genetics	1
mrna-seq	1
rb	1
myb	1
mir216a	1
aging	1
latent	1
translation	1
pattern_discovery	1
pbc	1
early-stage	1
eno1	1
study_design	1
clusterin	1
sampling	1

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