CiteULike: jjray's Dinner:AR [3 articles]

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	Separating forward and backward pathways in nonequilibrium umbrella sampling [My Copy] The Journal of Chemical Physics, Vol. 131, No. 15. (2009), 154104. by Alex Dickson, Aryeh Warmflash, Aaron R. Dinner posted to sampling non-equilibrium monte_carlo method chemical_physics by jjray on 2009-10-21 21:16:53 as along with 1 person dlimmer
	Critical behavior of a model for catalyzed autoamplification [My Copy] The Journal of Chemical Physics, Vol. 130, No. 13. (2009), 134906. by Martin Tchernookov, Aryeh Warmflash, Aaron R. Dinner posted to biophysics criticality dynamical_system feedback gene_network mathematical_model network by jjray on 2009-04-07 22:55:03 as
	Signatures of combinatorial regulation in intrinsic biological noise [My Copy] Proceedings of the National Academy of Sciences (3 November 2008) by Aryeh Warmflash, Aaron R. Dinner posted to gene_regulation mathematical_model noise transcriptional_regulation by jjray on 2008-11-04 16:22:08 as along with 2 people yyfwuhan kshundyak

bacteria	299
gene_regulation	263
mathematical_model	261
stochastic	205
signaling	160
evolution	150
noise	139
mycobacterium_tuberculosis	139
two-component_system	135
e_coli	135
network	135
feedback	131
review	106
biophysics	105
gene_expression	87
method	61
biochemistry	60
t_cell	60
immune_activation	59
transcription	56
bacillus_subtilis	56
theory	53
tnf	53
physics	53
murine_macrophage	51
chemokine	50
chemotaxis	48
robustness	45
metabolism	39
quantitative_data	38
sporulation	38
network_motifs	38
nitric_oxide	38
systems_approach	37
simulation	36
thermodynamics	36
bistability	35
phopq	34
spo0	33
dynamical_system	33
phosphorylation	32
development	30
regulatory_t_cell	30
ifn-gamma	30
salmonella	30
information	29
mrna	29
human_macrophage	29
kinetics	29
spatial	29
promoter	29
oscillation	29
granuloma	27
transcriptional_regulation	26
synthetic_biology	26
stability	25
nf-kappab	25
eukaryote	23
macrophage	22
yeast	22
complexity	21
sigma_factor	21
dynamics	21
gillespie_algorithm	21
statistical_mechanics	20
biochemical_systems_theory	20
growth_rate	20
evolutionary_dynamics	19
iron	19
cytokine	19
chromosome_organization	19
positive_feedback	19
non-equilibrium	18
toll-like_receptor	17
opinion	17
apoptosis	17
sensitivity_analysis	17
gene_order	17
host-pathogen_interaction	16
history	16
diffusion	16
human_monocyte	16
inos	16
bara	15
feedforward	15
mathematically_controlled_comparison	15
phenotypic_heterogeneity	15
game_theory	14
gene_network	14
adaptation	14
crosstalk	13
quantum_mechanics	13
computation	13
immune_cell_kinetics	13
chemical_reaction	13
response_time	13
degradation	13
design_principles	13
dna_binding	13
csra	12
translation	12
sensitivity	12
mutation	11
optimization	11
genetics	11
operon	11
transcriptional_burst	11
macrophage_activation	11
ccl5	11
energy	11
ecology	10
ccl2	10
mathematics	10
neutrophil	10
langevin	10
distribution	10
textbook	10
stress_response	10
modularity	10
polarity	9
recruitment	9
3-dimensional_structure	9
statistical_physics	9
mouse	9
recombination	9
lps	9
parameter	9
population_genetics	9
lam	9
immunology	9
atp	9
statistical_method	9
dna	9
temporal_response	8
quorum_sensing	8
entropy	8
phage	8
mathematical_biology	8
criticality	8
cooperativity	8
hysteresis	8
fokker-planck	8
brownian_motion	8
statistics	8
frequency	8
neuroscience	8
enzyme	8
monte_carlo	8
lung	8
human	8
large_deviations	8
stem_cell	7
delay	7
agent_based	7
graph_theory	7
intracellular	7
phenotype	7
phagocytosis	7
protein_interactions	7
chaos	7
conformational_dynamics	6
economics	6
jf	6
multiscale	6
data_fitting	6
phagosome	6
protein_folding	6
power_law	6
mycobacterium_bovis	6
detailed_balance	6
socs1	6
macrophage_deactivation	6
evolvability	6
philosophy_of_science	6
drosophila	6
transcriptional_reprogramming	6
bifurcation	6
population	6
timescale	6
canalization	6
synergistic_signals	6
prokaryote	5
geometric	5
ratchet	5
kinetic_proofreading	5
pattern_formation	5
tor	5
inflammation	5
algorithm	5
necrosis	5
rni	5
ergodic	5
fluid_flow	5
sos	5
mechanism	5
signaling_cascade	5
receptor	5
biology_as_engineering	5
rare_events	5
epistasis	5
stat1	5
commentary	4
synergistic	4
spin_glass	4
bursting	4
dynamic_range	4
tau_leap	4
chemical_physics	4
dose_response	4
markov_chain	4
cxcr3	4
steady_state	4
latency	4
protein_binding	4
cell_polarization	4
rate	4
fitness_landscape	4
editorial	4
irf-1	4
shea-ackers	4
pathogen_killing	4
genome	4
horizontal_gene_transfer	4
persister	4
fluctuation-dissipation	4
phylogeny	4
network_inference	4
mutual_information	4
cxcl9	4
repressilator	4
antagonist	4
zero-order_ultrasensitivity	4
co-culture	3
potential	3
siderophore	3
competence	3
ccr5	3
correlation	3
book	3
data	3
shannon_entropy	3
ferritin	3
ctl	3
replicator_equation	3
extrinsic_noise	3
endothelium	3
b_cell	3
flow_cytometry	3
receptor_binding	3
bayesian_inference	3
mode-of-control	3
gibbs	3
demand_theory	3
nucleus	3
heat_shock	3
differential_equations	3
phobr	3
threshold_signal	3
single_cell	3
cell_cycle	3
tsc	3
neural_network	3
hamiltonian	3
reaction-diffusion	3
random_walk	3
antibiotics	3
signal_specificity	3
physical_limit	3
probability	3
trade-off	3
fractal	3
analysis	3
scale-free	3
mutational_entropy	3
historical_contingency	3
cell_division	3
flexibility	3
lymphocyte	3
timing	3
early_immunity	3
roi	3
foxp3	3
binding_constant	2
es_cell	2
piecewise_power-law	2
genetic_linkage	2
in_vitro	2
microarray	2
adiabatic_elimination	2
macrodomain	2
dimerization	2
convergent_evolution	2
copy_number	2
mammalian	2
estimation	2
localization	2
chemistry	2
tumor	2
dense_overlapping_regulon	2
ultrasensitivity	2
ccr2	2
photosynthesis	2
rate_saturation	2
neutral_evolution	2
fragility	2
endothelial_cell	2
notes	2
brownian_dynamics	2
hierarchy	2
uncertainty_principle	2
mutational_robustness	2
boolean_network	2
survival_strategy	2
numerical_methods	2
nucleosome	2
rat_macrophage	2
poisson_process	2
cost-benefit	2
time_series	2
writing	2
dual_feedback_motif	2
macrophage_mtb_moi_upper_limit	2
gradient	2
nadph_phagocyte_oxidase	2
labile_iron_pool	2
global_regulator	2
rrna	2
bottleneck	2
motif_compositions	2
overexpression	2
linear_noise_approximation	2
adhesion_molecules	2
intrinsic_protein_disorder	2
artificial_evolution	2
ider	2
goldbeter-koshland	2
systems_biology	2
molecular_crowding	2
periodic	2
nonlinear	2
supercoiling	2
rna	2
statistical_model	2
cooperation	2
autocrine_paracrine	2
biological_uncertainty_principle	2
fluorescence	2
ornsteinuhlenbeck	2
strong_inference	2
chromatin	2
pde	2
bliss_independence	2
type-1_ifn	2
database	2
deconvolution	2
polymer	2
regulon	2
spectral	2
rat	2
cytoplasm	2
chemokine_paradox	2
cell_size	2
physical_chemistry	2
turbulence	2
proportion	2
secretion	2
microenvironment	2
statistical_sensitivity	2
michaelis-menten	1
multimerization	1
mass-action	1
lymph_node	1
behavior	1
superoxide	1
falsification	1
mixed_feedback	1
quantum_field_theory	1
tgfbeta	1
astrobiology	1
ess	1
forward_flux_sampling	1
myd88	1
fitness	1
pleiotropy	1
induction	1
transcriptional_attentuation	1
filter	1
time	1
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il-10	1
clinical	1
mycobacteria	1
component_relevance_ranking	1
stochastic_resonance	1
ribosome	1
molecular_dynamics	1
limit_cycle	1
dendritic_cell	1
volume	1
amino_acid	1
cxcl11	1
mycobacterium_marinum	1
manhattan_project	1
ppar-gamma	1
endoplasmic_reticulum	1
eigenworm	1
protein_function	1
mitochondria	1
protein_export	1
lattice	1
intron	1
hilbert_space	1
organization	1
formyl_peptides	1
stoichiometry	1
quantitative_response	1
islets_of_langerhans	1
maximum_likelihood	1
free_energy	1
homeostatic_circuit	1
codon_bias	1
lipid_domain	1
hiv	1
fermi_problem	1
leishmania_major	1
myosin	1
cytotoxic	1
convolution	1
smoluchowski_diffusion	1
hormesis	1
propensity	1
mtsa-10	1
th1	1
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lhs	1
sampling	1
just-in-time	1
proteasome	1
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series	1
fasl	1
memristor	1
gfp	1
phase_transition	1
circadian_cycle	1
refseq	1
half-life	1
non-human_primate	1
kolmogorov_complexity	1
cellular_automaton	1
met-leu-phe	1
philosophy	1
iron_percent_acquisition	1
focal_secretion	1
mycobacterium_smegmatis	1
relativity	1
superstatistics	1
motility	1
cytochrome_oxidase	1
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branching_process	1
approximation	1
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elongation	1
triad	1
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symbolic_dynamics	1
percolation	1
microfluidics	1
metropolis-hastings	1
il-12	1
laplace_transform	1
granular_dynamics	1
inhertiance	1
potts_model	1
phase_coherence	1
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siphon	1
kolmogorov-smirnov	1
rapamycin	1
myxobacteria	1
lip	1
kinetic_insulation	1
dna_replication	1
fdr	1
nkt	1
szilard	1
migration	1
deterministic	1
infliximab	1
causality	1
sde	1
drift	1
speciation	1
cell_turn_angle	1
phenotypic_mutation	1
coherent_coupling	1
group_selection	1
genetic_variation	1

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