CiteULike: jjray's Khammash:M [4 articles]

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	Listening to the noise: random fluctuations reveal gene network parameters. [My Copy] Molecular systems biology, Vol. 5 (13 October 2009) by Brian Munsky, Brooke Trinh, Mustafa Khammash posted to noise network mathematical_model gene_expression by jjray on 2009-10-15 16:22:42 as along with 3 people kintoki pmalkus TRHvidsten
	Module-based analysis of robustness tradeoffs in the heat shock response system. [My Copy] PLoS Comput Biol, Vol. 2, No. 7. (28 July 2006) by H. Kurata, H. El-Samad, R. Iwasaki, et al.H. Ohtake, J. C. Doyle, I. Grigorova, C. A. Gross, M. Khammash posted to design_principles gene_order heat_shock robustness by jjray on 2008-01-29 21:20:22 as
	Regulated degradation is a mechanism for suppressing stochastic fluctuations in gene regulatory networks. [My Copy] Biophys J, Vol. 90, No. 10. (15 May 2006), pp. 3749-3761. by H. El-Samad, M. Khammash posted to degradation gene_order gene_regulation stochastic by jjray on 2008-01-29 21:19:16 as along with 2 people and 1 group klo dbikard SynBioSys
	Surviving heat shock: Control strategies for robustness and performance [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2736-2741. by H. El-Samad, H. Kurata, J. C. Doyle, C. A. Gross, M. Khammash posted to design_principles gene_order heat_shock robustness by jjray on 2008-01-29 21:18:41 as along with 4 people karthikraman jporternj monod madhadron

bacteria	299
gene_regulation	263
mathematical_model	260
stochastic	204
signaling	160
evolution	150
noise	139
mycobacterium_tuberculosis	139
two-component_system	135
e_coli	135
network	135
feedback	131
review	106
biophysics	105
gene_expression	87
method	61
t_cell	60
immune_activation	59
biochemistry	59
transcription	56
bacillus_subtilis	56
theory	53
tnf	53
physics	53
murine_macrophage	51
chemokine	50
chemotaxis	48
robustness	45
metabolism	39
quantitative_data	38
sporulation	38
network_motifs	38
nitric_oxide	38
systems_approach	37
simulation	36
thermodynamics	36
bistability	35
phopq	34
spo0	33
dynamical_system	33
phosphorylation	32
development	30
regulatory_t_cell	30
ifn-gamma	30
salmonella	30
information	29
mrna	29
human_macrophage	29
kinetics	29
spatial	29
promoter	29
oscillation	29
granuloma	27
transcriptional_regulation	26
synthetic_biology	26
stability	25
nf-kappab	25
eukaryote	23
macrophage	22
yeast	22
complexity	21
sigma_factor	21
dynamics	21
gillespie_algorithm	21
statistical_mechanics	20
biochemical_systems_theory	20
growth_rate	20
evolutionary_dynamics	19
iron	19
cytokine	19
chromosome_organization	19
positive_feedback	19
non-equilibrium	18
toll-like_receptor	17
gene_order	17
opinion	17
sensitivity_analysis	17
apoptosis	17
diffusion	16
host-pathogen_interaction	16
inos	16
human_monocyte	16
history	16
feedforward	15
phenotypic_heterogeneity	15
bara	15
mathematically_controlled_comparison	15
gene_network	14
game_theory	14
adaptation	14
degradation	13
computation	13
dna_binding	13
crosstalk	13
quantum_mechanics	13
chemical_reaction	13
immune_cell_kinetics	13
design_principles	13
csra	12
response_time	12
translation	12
sensitivity	12
mutation	11
optimization	11
genetics	11
operon	11
transcriptional_burst	11
macrophage_activation	11
ccl5	11
energy	11
modularity	10
stress_response	10
distribution	10
mathematics	10
textbook	10
ccl2	10
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langevin	10
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mouse	9
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atp	9
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parameter	9
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recruitment	9
3-dimensional_structure	9
lam	9
lps	9
frequency	8
fokker-planck	8
monte_carlo	8
enzyme	8
human	8
entropy	8
criticality	8
cooperativity	8
lung	8
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mathematical_biology	8
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hysteresis	8
phage	8
neuroscience	8
brownian_motion	8
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quorum_sensing	8
phenotype	7
stem_cell	7
chaos	7
protein_interactions	7
graph_theory	7
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phagocytosis	7
agent_based	7
delay	7
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timescale	6
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jf	6
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conformational_dynamics	6
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mycobacterium_bovis	6
protein_folding	6
socs1	6
drosophila	6
power_law	6
pattern_formation	5
stat1	5
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signaling_cascade	5
rni	5
prokaryote	5
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sos	5
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ratchet	5
geometric	5
mechanism	5
receptor	5
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tor	5
necrosis	5
biology_as_engineering	5
commentary	4
synergistic	4
spin_glass	4
bursting	4
dynamic_range	4
tau_leap	4
kinetic_proofreading	4
chemical_physics	4
dose_response	4
markov_chain	4
cxcr3	4
steady_state	4
latency	4
protein_binding	4
cell_polarization	4
rate	4
fitness_landscape	4
editorial	4
irf-1	4
shea-ackers	4
pathogen_killing	4
genome	4
horizontal_gene_transfer	4
persister	4
fluctuation-dissipation	4
phylogeny	4
network_inference	4
mutual_information	4
cxcl9	4
repressilator	4
antagonist	4
zero-order_ultrasensitivity	4
co-culture	3
potential	3
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competence	3
ccr5	3
correlation	3
book	3
data	3
shannon_entropy	3
ferritin	3
ctl	3
replicator_equation	3
extrinsic_noise	3
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b_cell	3
flow_cytometry	3
receptor_binding	3
bayesian_inference	3
mode-of-control	3
gibbs	3
demand_theory	3
nucleus	3
heat_shock	3
differential_equations	3
phobr	3
threshold_signal	3
single_cell	3
cell_cycle	3
tsc	3
neural_network	3
hamiltonian	3
reaction-diffusion	3
random_walk	3
antibiotics	3
signal_specificity	3
physical_limit	3
probability	3
trade-off	3
fractal	3
analysis	3
scale-free	3
mutational_entropy	3
historical_contingency	3
cell_division	3
flexibility	3
lymphocyte	3
timing	3
early_immunity	3
roi	3
foxp3	3
binding_constant	2
es_cell	2
piecewise_power-law	2
genetic_linkage	2
in_vitro	2
microarray	2
adiabatic_elimination	2
macrodomain	2
dimerization	2
convergent_evolution	2
copy_number	2
mammalian	2
estimation	2
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chemistry	2
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ultrasensitivity	2
ccr2	2
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notes	2
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nucleosome	2
rat_macrophage	2
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macrophage_mtb_moi_upper_limit	2
gradient	2
nadph_phagocyte_oxidase	2
labile_iron_pool	2
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rrna	2
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linear_noise_approximation	2
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ider	2
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ornsteinuhlenbeck	2
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pde	2
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polymer	2
regulon	2
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cell_size	2
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proportion	2
secretion	2
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statistical_sensitivity	2
michaelis-menten	1
multimerization	1
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lymph_node	1
behavior	1
superoxide	1
falsification	1
mixed_feedback	1
quantum_field_theory	1
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ess	1
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volume	1
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intron	1
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organization	1
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sde	1
drift	1
speciation	1
cell_turn_angle	1
phenotypic_mutation	1
coherent_coupling	1
group_selection	1
genetic_variation	1

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