CiteULike: jjray's Walczak:AM [5 articles]

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	Optimizing information flow in small genetic networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 3. (2009), 031920. by Gašper Tkačik, Aleksandra M. Walczak, William Bialek posted to optimization noise information gene_network gene_expression by jjray on 2009-09-30 22:00:57 as
	Spectral solutions to stochastic models of gene expression with bursts and regulation [My Copy] (20 Jul 2009) by Andrew Mugler, Aleksandra M. Walczak, Chris H. Wiggins posted to biophysics bursting gene_expression spectral stochastic by jjray on 2009-07-22 18:44:23 as
	A stochastic spectral analysis of transcriptional regulatory cascades [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6529-6534. by Aleksandra M. Walczak, Andrew Mugler, Chris H. Wiggins posted to biophysics frequency gene_regulation network noise spectral stochastic transcriptional_regulation by jjray on 2009-04-08 17:57:52 as along with 5 people and 1 group roys erel10 sobolevnrm kshundyak bais baker-group
	Optimizing information flow in small genetic networks. I [My Copy] (26 Mar 2009) by Gasper Tkacik, Aleksandra M. Walczak, William Bialek posted to gene_network information mathematical_model optimization by jjray on 2009-03-27 22:20:44 as
	Extinction and resurrection in gene networks [My Copy] Proceedings of the National Academy of Sciences (25 November 2008) by Daniel Schultz, Aleksandra M. Walczak, José N. Onuchic, Peter G. Wolynes posted to biophysics dynamical_system gene_network mathematical_model stochastic by jjray on 2008-11-26 17:39:15 as along with 3 people akraemer kshundyak stk

bacteria	299
gene_regulation	263
mathematical_model	260
stochastic	204
signaling	160
evolution	150
noise	139
mycobacterium_tuberculosis	139
two-component_system	135
e_coli	135
network	135
feedback	131
review	106
biophysics	105
gene_expression	87
method	61
t_cell	60
immune_activation	59
biochemistry	59
transcription	56
bacillus_subtilis	56
theory	53
tnf	53
physics	53
murine_macrophage	51
chemokine	50
chemotaxis	48
robustness	45
metabolism	39
quantitative_data	38
sporulation	38
network_motifs	38
nitric_oxide	38
systems_approach	37
simulation	36
thermodynamics	36
bistability	35
phopq	34
spo0	33
dynamical_system	33
phosphorylation	32
development	30
regulatory_t_cell	30
ifn-gamma	30
salmonella	30
information	29
mrna	29
human_macrophage	29
kinetics	29
spatial	29
promoter	29
oscillation	29
granuloma	27
transcriptional_regulation	26
synthetic_biology	26
stability	25
nf-kappab	25
eukaryote	23
macrophage	22
yeast	22
complexity	21
sigma_factor	21
dynamics	21
gillespie_algorithm	21
statistical_mechanics	20
biochemical_systems_theory	20
growth_rate	20
evolutionary_dynamics	19
iron	19
cytokine	19
chromosome_organization	19
positive_feedback	19
non-equilibrium	18
toll-like_receptor	17
gene_order	17
opinion	17
sensitivity_analysis	17
apoptosis	17
diffusion	16
host-pathogen_interaction	16
inos	16
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history	16
feedforward	15
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bara	15
mathematically_controlled_comparison	15
gene_network	14
game_theory	14
adaptation	14
degradation	13
computation	13
dna_binding	13
crosstalk	13
quantum_mechanics	13
chemical_reaction	13
immune_cell_kinetics	13
design_principles	13
csra	12
response_time	12
translation	12
sensitivity	12
mutation	11
optimization	11
genetics	11
operon	11
transcriptional_burst	11
macrophage_activation	11
ccl5	11
energy	11
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stress_response	10
distribution	10
mathematics	10
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mouse	9
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atp	9
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parameter	9
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3-dimensional_structure	9
lam	9
lps	9
frequency	8
fokker-planck	8
monte_carlo	8
enzyme	8
human	8
entropy	8
criticality	8
cooperativity	8
lung	8
large_deviations	8
mathematical_biology	8
statistics	8
hysteresis	8
phage	8
neuroscience	8
brownian_motion	8
temporal_response	8
quorum_sensing	8
phenotype	7
stem_cell	7
chaos	7
protein_interactions	7
graph_theory	7
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phagocytosis	7
agent_based	7
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phagosome	6
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timescale	6
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jf	6
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detailed_balance	6
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conformational_dynamics	6
economics	6
synergistic_signals	6
mycobacterium_bovis	6
protein_folding	6
socs1	6
drosophila	6
power_law	6
pattern_formation	5
stat1	5
epistasis	5
signaling_cascade	5
rni	5
prokaryote	5
fluid_flow	5
algorithm	5
sos	5
ergodic	5
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geometric	5
mechanism	5
receptor	5
rare_events	5
inflammation	5
tor	5
necrosis	5
biology_as_engineering	5
commentary	4
synergistic	4
spin_glass	4
bursting	4
dynamic_range	4
tau_leap	4
kinetic_proofreading	4
chemical_physics	4
dose_response	4
markov_chain	4
cxcr3	4
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latency	4
protein_binding	4
cell_polarization	4
rate	4
fitness_landscape	4
editorial	4
irf-1	4
shea-ackers	4
pathogen_killing	4
genome	4
horizontal_gene_transfer	4
persister	4
fluctuation-dissipation	4
phylogeny	4
network_inference	4
mutual_information	4
cxcl9	4
repressilator	4
antagonist	4
zero-order_ultrasensitivity	4
co-culture	3
potential	3
siderophore	3
competence	3
ccr5	3
correlation	3
book	3
data	3
shannon_entropy	3
ferritin	3
ctl	3
replicator_equation	3
extrinsic_noise	3
endothelium	3
b_cell	3
flow_cytometry	3
receptor_binding	3
bayesian_inference	3
mode-of-control	3
gibbs	3
demand_theory	3
nucleus	3
heat_shock	3
differential_equations	3
phobr	3
threshold_signal	3
single_cell	3
cell_cycle	3
tsc	3
neural_network	3
hamiltonian	3
reaction-diffusion	3
random_walk	3
antibiotics	3
signal_specificity	3
physical_limit	3
probability	3
trade-off	3
fractal	3
analysis	3
scale-free	3
mutational_entropy	3
historical_contingency	3
cell_division	3
flexibility	3
lymphocyte	3
timing	3
early_immunity	3
roi	3
foxp3	3
binding_constant	2
es_cell	2
piecewise_power-law	2
genetic_linkage	2
in_vitro	2
microarray	2
adiabatic_elimination	2
macrodomain	2
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convergent_evolution	2
copy_number	2
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localization	2
chemistry	2
tumor	2
dense_overlapping_regulon	2
ultrasensitivity	2
ccr2	2
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fragility	2
endothelial_cell	2
notes	2
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uncertainty_principle	2
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numerical_methods	2
nucleosome	2
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poisson_process	2
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time_series	2
writing	2
dual_feedback_motif	2
macrophage_mtb_moi_upper_limit	2
gradient	2
nadph_phagocyte_oxidase	2
labile_iron_pool	2
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motif_compositions	2
overexpression	2
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ider	2
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chromatin	2
pde	2
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database	2
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cell_size	2
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proportion	2
secretion	2
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statistical_sensitivity	2
michaelis-menten	1
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lymph_node	1
behavior	1
superoxide	1
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quantum_field_theory	1
tgfbeta	1
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ess	1
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szilard	1
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sde	1
drift	1
speciation	1
cell_turn_angle	1
phenotypic_mutation	1
coherent_coupling	1
group_selection	1
genetic_variation	1

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