CiteULike: jjray's ten Wolde:PR [3 articles]

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	Mutual Information between Input and Output Trajectories of Biochemical Networks [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218101. by Filipe Tostevin, Pieter R. ten Wolde posted to bacteria biochemistry chemotaxis e_coli information network signaling by jjray on 2009-05-29 20:33:51 as
	Differential Affinity and Catalytic Activity of CheZ in <italic>E. coli</italic> Chemotaxis [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (8 May 2009), e1000378. by Siebe B. van Albada, Pieter R. ten Wolde edited by Christopher Rao posted to bacteria chemotaxis e_coli phosphorylation signaling two-component_system by jjray on 2009-05-29 16:44:25 as
	Diffusion of transcription factors can drastically enhance the noise in gene expression. [My Copy] Biophys J, Vol. 91, No. 12. (15 December 2006), pp. 4350-4367. by J. S. van Zon, M. J. Morelli, S. Tănase-Nicola, P. R. ten Wolde posted to gene_regulation gillespie_algorithm mathematical_model noise stochastic transcription by jjray on 2007-05-30 19:23:39 as along with 3 people balabu margaritis ddcttrl

bacteria	295
gene_regulation	258
mathematical_model	257
stochastic	198
signaling	157
evolution	146
mycobacterium_tuberculosis	139
noise	135
e_coli	134
two-component_system	134
network	133
feedback	131
review	104
biophysics	102
gene_expression	85
t_cell	60
immune_activation	59
method	58
biochemistry	58
transcription	56
bacillus_subtilis	55
tnf	53
theory	52
murine_macrophage	51
physics	51
chemokine	50
chemotaxis	48
robustness	45
metabolism	38
network_motifs	38
nitric_oxide	38
sporulation	37
systems_approach	37
quantitative_data	37
thermodynamics	36
bistability	35
simulation	34
phopq	34
spo0	33
dynamical_system	33
phosphorylation	32
regulatory_t_cell	30
ifn-gamma	30
salmonella	30
promoter	29
information	29
kinetics	29
mrna	29
human_macrophage	29
development	29
oscillation	28
spatial	27
granuloma	27
synthetic_biology	26
transcriptional_regulation	26
nf-kappab	25
stability	25
eukaryote	23
macrophage	22
sigma_factor	21
gillespie_algorithm	21
dynamics	21
yeast	21
complexity	21
growth_rate	20
biochemical_systems_theory	20
statistical_mechanics	20
cytokine	19
evolutionary_dynamics	19
iron	19
positive_feedback	19
non-equilibrium	18
gene_order	17
apoptosis	17
sensitivity_analysis	17
opinion	17
toll-like_receptor	17
chromosome_organization	16
host-pathogen_interaction	16
inos	16
human_monocyte	16
diffusion	16
history	16
phenotypic_heterogeneity	15
bara	15
mathematically_controlled_comparison	15
game_theory	14
gene_network	14
feedforward	14
adaptation	14
immune_cell_kinetics	13
design_principles	13
quantum_mechanics	13
dna_binding	13
chemical_reaction	13
degradation	13
computation	13
crosstalk	13
sensitivity	12
response_time	12
csra	12
translation	12
optimization	11
genetics	11
energy	11
macrophage_activation	11
transcriptional_burst	11
mutation	11
ccl5	11
ccl2	10
langevin	10
modularity	10
neutrophil	10
distribution	10
textbook	10
stress_response	10
mathematics	10
ecology	10
lam	9
lps	9
atp	9
3-dimensional_structure	9
dna	9
mouse	9
polarity	9
recruitment	9
immunology	9
operon	9
population_genetics	9
statistical_method	9
statistical_physics	9
human	8
mathematical_biology	8
statistics	8
criticality	8
large_deviations	8
parameter	8
brownian_motion	8
phage	8
cooperativity	8
lung	8
hysteresis	8
quorum_sensing	8
fokker-planck	8
monte_carlo	8
frequency	8
neuroscience	8
entropy	8
recombination	8
temporal_response	8
protein_interactions	7
enzyme	7
phagocytosis	7
delay	7
stem_cell	7
intracellular	7
graph_theory	7
phenotype	7
chaos	7
agent_based	7
transcriptional_reprogramming	6
detailed_balance	6
bifurcation	6
evolvability	6
socs1	6
jf	6
mycobacterium_bovis	6
economics	6
philosophy_of_science	6
timescale	6
conformational_dynamics	6
population	6
synergistic_signals	6
drosophila	6
protein_folding	6
power_law	6
data_fitting	6
multiscale	6
phagosome	6
macrophage_deactivation	6
canalization	6
fluid_flow	5
pattern_formation	5
inflammation	5
ratchet	5
signaling_cascade	5
stat1	5
tor	5
ergodic	5
geometric	5
algorithm	5
rni	5
prokaryote	5
receptor	5
sos	5
biology_as_engineering	5
mechanism	5
necrosis	5
protein_binding	4
repressilator	4
cxcl9	4
fluctuation-dissipation	4
mutual_information	4
network_inference	4
persister	4
genome	4
irf-1	4
phylogeny	4
steady_state	4
rare_events	4
dynamic_range	4
tau_leap	4
kinetic_proofreading	4
bursting	4
cell_polarization	4
cxcr3	4
rate	4
markov_chain	4
fitness_landscape	4
latency	4
pathogen_killing	4
chemical_physics	4
editorial	4
spin_glass	4
shea-ackers	4
synergistic	4
dose_response	4
zero-order_ultrasensitivity	4
epistasis	4
commentary	4
antagonist	4
potential	3
competence	3
analysis	3
siderophore	3
endothelium	3
reaction-diffusion	3
historical_contingency	3
extrinsic_noise	3
receptor_binding	3
gibbs	3
lymphocyte	3
book	3
mutational_entropy	3
heat_shock	3
neural_network	3
trade-off	3
ccr5	3
threshold_signal	3
single_cell	3
antibiotics	3
timing	3
probability	3
data	3
random_walk	3
ctl	3
flexibility	3
scale-free	3
replicator_equation	3
shannon_entropy	3
cell_division	3
tsc	3
fractal	3
cell_cycle	3
phobr	3
b_cell	3
correlation	3
mode-of-control	3
foxp3	3
roi	3
hamiltonian	3
bayesian_inference	3
demand_theory	3
nucleus	3
signal_specificity	3
flow_cytometry	3
physical_limit	3
early_immunity	3
differential_equations	3
co-culture	3
ferritin	3
hierarchy	2
copy_number	2
genetic_linkage	2
binding_constant	2
microenvironment	2
spectral	2
periodic	2
molecular_crowding	2
boolean_network	2
localization	2
time_series	2
endothelial_cell	2
mutational_robustness	2
rat	2
dimerization	2
physical_chemistry	2
poisson_process	2
global_regulator	2
bottleneck	2
adhesion_molecules	2
proportion	2
convergent_evolution	2
database	2
pde	2
polymer	2
type-1_ifn	2
deconvolution	2
turbulence	2
microarray	2
horizontal_gene_transfer	2
dense_overlapping_regulon	2
ultrasensitivity	2
photosynthesis	2
notes	2
brownian_dynamics	2
uncertainty_principle	2
nucleosome	2
labile_iron_pool	2
ider	2
systems_biology	2
nonlinear	2
cytoplasm	2
goldbeter-koshland	2
fragility	2
chemistry	2
neutral_evolution	2
in_vitro	2
motif_compositions	2
macrodomain	2
cell_size	2
survival_strategy	2
es_cell	2
regulon	2
rat_macrophage	2
ccr2	2
mammalian	2
autocrine_paracrine	2
macrophage_mtb_moi_upper_limit	2
rate_saturation	2
statistical_sensitivity	2
statistical_model	2
chemokine_paradox	2
chromatin	2
artificial_evolution	2
overexpression	2
rrna	2
adiabatic_elimination	2
fluorescence	2
writing	2
intrinsic_protein_disorder	2
piecewise_power-law	2
ornsteinuhlenbeck	2
strong_inference	2
bliss_independence	2
secretion	2
dual_feedback_motif	2
cooperation	2
biological_uncertainty_principle	2
tumor	2
nadph_phagocyte_oxidase	2
numerical_methods	2
cost-benefit	2
proteome	1
transcriptional_attentuation	1
induction	1
symbolic_dynamics	1
percolation	1
pleiotropy	1
cell_turn_angle	1
homeostatic_circuit	1
microfluidics	1
metropolis-hastings	1
il-12	1
laplace_transform	1
myd88	1
granular_dynamics	1
mitochondria	1
convolution	1
protein_export	1
cytotoxic	1
refseq	1
inhertiance	1
volume	1
phenotypic_mutation	1
phase_transition	1
lattice	1
intron	1
potts_model	1
phase_coherence	1
il-2	1
siphon	1
gfp	1
coherent_coupling	1
amino_acid	1
kolmogorov-smirnov	1
memristor	1
fasl	1
ess	1
rapamycin	1
series	1
group_selection	1
myxobacteria	1
transendothelial_migration	1
overshoot	1
genetic_variation	1
astrobiology	1
proteasome	1
metropolis_rule	1
tgfbeta	1
lip	1
mass-action	1
kinetic_insulation	1
free_energy	1
dna_replication	1
just-in-time	1
quantum_field_theory	1
fdr	1
nkt	1
myosin	1
mixed_feedback	1
hilbert_space	1
michaelis-menten	1
szilard	1
leishmania_major	1
cxcl11	1
mycobacterium_marinum	1
reciprocal_adaptation	1
manhattan_project	1
falsification	1
superoxide	1
ppar-gamma	1
rna	1
hiv	1
migration	1
deterministic	1
rnase	1
infliximab	1
sampling	1
lipid_domain	1
speculation	1
multimerization	1
organization	1
lhs	1
antibody	1
causality	1
c_elegans	1
behavior	1
formyl_peptides	1
stoichiometry	1
oxidative_stress	1
codon_bias	1
th1	1
sde	1
mtsa-10	1
mycobacterium_smegmatis	1
relativity	1
focal_secretion	1
superstatistics	1
supercoiling	1
endoplasmic_reticulum	1
iron_percent_acquisition	1
propensity	1
philosophy	1
lymph_node	1
motility	1
clinical	1
mycobacteria	1
eigenworm	1
cytochrome_oxidase	1
equilibrium	1
protein_function	1
il-10	1
component_relevance_ranking	1
stochastic_resonance	1
met-leu-phe	1
cellular_automaton	1
gradient	1
kolmogorov_complexity	1
branching_process	1
hormesis	1
approximation	1
maximum_likelihood	1
smoluchowski_diffusion	1
ribosome	1
sirna	1
drift	1
molecular_dynamics	1
time	1
estimation	1
limit_cycle	1
quantitative_response	1
dendritic_cell	1
substrate_competition	1
islets_of_langerhans	1
elongation	1
filter	1
non-human_primate	1
triad	1
half-life	1

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