jjray's bacteria [at least 200 articles] Export

Recent papers added to jjray's library classified by the tag bacteria. You can also see everyone's bacteria.

	Control of mRNA processing and decay in prokaryotes [My Copy] Genetica, Vol. 94, No. 2. (1 June 1994), pp. 157-172. by Pietro Alifano, Carmelo B. Bruni, Maria S. Carlomagno posted to stability review mrna degradation bacteria by jjray on 2009-11-19 22:40:02 as
	RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation [My Copy] Nature, Vol. 374, No. 6518. (09 March 1995), pp. 180-183. by Fengfeng Xu, Stanley Cohen, N. posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 22:03:07 as
	MESSENGER RNA STABILITY AND ITS ROLE IN CONTROL OF GENE EXPRESSION IN BACTERIA AND PHAGES [My Copy] Annual Review of Genetics, Vol. 33, No. 1. (1999), pp. 193-227. by Marianne G. Manago posted to stability review mrna gene_expression feedback degradation bacteria by jjray on 2009-11-19 21:46:47 as
	Differential mRNA stability controls relative gene expression within a polycistronic operon [My Copy] Cell, Vol. 51, No. 6. (24 December 1987), pp. 1131-1143. by S. F. Newbury, N. H. Smith, C. F. Higgins posted to stability operon mrna gene_expression e_coli bacteria by jjray on 2009-11-19 20:40:55 as
	Evidence against the physiological role of acetyl phosphate in the phosphorylation of the ArcA response regulator in Escherichia coli. [My Copy] Journal of microbiology (Seoul, Korea), Vol. 47, No. 5. (1 October 2009), pp. 657-662. by Xueqiao Liu, Gabriela R. Peña Sandoval, Barry L. Wanner, Won Seok S. Jung, Dimitris Georgellis, Ohsuk Kwon posted to two-component_system phosphorylation e_coli bacteria by jjray on 2009-11-19 18:15:43 as
	Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. [My Copy] Molecular microbiology, Vol. 58, No. 5. (December 2005), pp. 1421-1429. by Anders Aamann A. Rasmussen, Maiken Eriksen, Kambiz Gilany, et al.Christina Udesen, Thomas Franch, Carsten Petersen, Poul Valentin-Hansen posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:14:28 as
	The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells. [My Copy] Nucleic acids research, Vol. 34, No. 19. (November 2006), pp. 5695-5704. by Bijoy K. Mohanty, Sidney R. Kushner posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:14:12 as
	Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems. [My Copy] Journal of bacteriology, Vol. 185, No. 16. (August 2003), pp. 4956-4972. by Lu Zhou, Xiang-He H. Lei, Barry R. Bochner, Barry L. Wanner posted to two-component_system phenotype e_coli bacteria by jjray on 2009-11-19 18:13:45 as
	The Sm-like protein Hfq regulates polyadenylation dependent mRNA decay in Escherichia coli. [My Copy] Molecular microbiology, Vol. 54, No. 4. (November 2004), pp. 905-920. by Bijoy K. Mohanty, Valerie F. Maples, Sidney R. Kushner posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:13:15 as
	Global analysis of Escherichia coli RNA degradosome function using DNA microarrays. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 9. (2 March 2004), pp. 2758-2763. by Jonathan A. Bernstein, Pei-Hsun H. Lin, Stanley N. Cohen, Sue Lin-Chao posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:12:47 as
	Genomic analysis of mRNA decay in E. coli with DNA microarrays. [My Copy] Methods in enzymology, Vol. 447 (2008), pp. 47-64. by Pei-Hsun H. Lin, Dharam Singh, Jonathan A. Bernstein, Sue Lin-Chao posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 18:11:44 as
	RNase E-based ribonucleoprotein complexes: mechanical basis of mRNA destabilization mediated by bacterial noncoding RNAs. [My Copy] Genes & development, Vol. 19, No. 18. (15 September 2005), pp. 2176-2186. by Teppei Morita, Kimika Maki, Hiroji Aiba posted to stability rnase mrna e_coli bacteria by jjray on 2009-11-19 18:11:11 as along with 2 people sglandt martainn
	Growth-rate dependent regulation of mRNA stability in Escherichia coli. [My Copy] Nature, Vol. 312, No. 5989. (7 1984), pp. 75-77. by G. Nilsson, J. G. Belasco, S. N. Cohen, A. von Gabain posted to stability mrna growth_rate e_coli bacteria by jjray on 2009-11-19 18:10:08 as
	The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises. [My Copy] Computational biology and chemistry, Vol. 30, No. 6. (December 2006), pp. 438-444. by Jeong-Rae R. Kim, Kwang-Hyun H. Cho posted to two-component_system simulation sensitivity robustness phosphorylation noise mathematical_model e_coli bacteria by jjray on 2009-11-19 18:06:21 as
	Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 15. (23 July 2002), pp. 9697-9702. by Jonathan A. Bernstein, Arkady B. Khodursky, Pei-Hsun Lin, Sue Lin-Chao, Stanley N. Cohen posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 17:41:29 as along with 4 people athma bjorns balajis madhadron
	Structure of deviations from optimality in biological systems [My Copy] Proceedings of the National Academy of Sciences (16 November 2009) by Alfonso PÃ©rez-Escudero, Marta Rivera-Alba, Gonzalo G. de Polavieja posted to optimization metabolism evolution e_coli bacteria by jjray on 2009-11-17 16:55:23 as
	Isolation ofrpoBMutations Causing Rifampicin Resistance inBacillus subtilisSpores Exposed to Simulated Martian Surface Conditions [My Copy] Astrobiology, Vol. 8, No. 6. (December 2008), pp. 1159-1167. by Amy E. Perkins, Andrew C. Schuerger, Wayne L. Nicholson posted to sporulation mutation bacteria bacillus_subtilis astrobiology by jjray on 2009-11-13 20:58:11 as
	Transcription, Translation, and the Evolution of Specialists and Generalists [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2661-2678. by Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean posted to translation transcription stress_response gene_expression evolution e_coli bacteria by jjray on 2009-11-10 16:14:56 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 5 people karthikraman venancio JeremyZucker dbikard rsaito
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted to stochastic evolution bacteria by jjray on 2009-11-04 19:29:15 as along with 6 people dbikard yyfwuhan Winzer pkm megraw pedrobeltrao
	Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000671. by Daniel M. Stoebel, Karsten Hokamp, Michael S. Last, Charles J. Dorman posted to stress_response sigma_factor evolution e_coli bacteria by jjray on 2009-11-03 23:33:51 as
	Invariant Distribution of Promoter Activities in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (23 October 2009), e1000545. by Alon Zaslaver, Shai Kaplan, Anat Bren, et al.Adrian Jinich, Avi Mayo, Erez Dekel, Uri Alon, Shalev Itzkovitz posted to promoter gene_expression e_coli distribution bacteria by jjray on 2009-11-03 23:28:45 as along with 1 person dbikard
	Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 512-522. by Tolga Çağatay, Marc Turcotte, Michael B. Elowitz, Jordi Garcia-Ojalvo, Gürol M. Süel posted to stochastic robustness noise network gene_regulation dynamics development bacteria by jjray on 2009-11-03 21:37:58 as along with 4 people maren dbikard samubernard venancio
	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to population_genetics evolution e_coli bacteria adaptation by jjray on 2009-10-21 19:27:03 as along with 31 people and 5 groups pmalkus dokky samubernard ilyashl biomcgary kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm djkt treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese ronbun_2009au Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks BergmanLab
	Bacillus subtilis spreads by surfing on waves of surfactant [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18109-18113. by Thomas E. Angelini, Marcus Roper, Roberto Kolter, David A. Weitz, Michael P. Brenner posted to spatial motility mathematical_model bacteria bacillus_subtilis by jjray on 2009-10-14 15:37:22 as
	Optimal cytoplasmatic density and flux balance model under macromolecular crowding effects [My Copy] (11 Oct 2009) by Alexei Vazquez posted to optimization metabolism e_coli diffusion cytoplasm bacteria by jjray on 2009-10-13 16:45:07 as along with 1 person apocapoc
	Induction Kinetics of a Conditional pH Stress Response System in Escherichia coli [My Copy] Journal of Molecular Biology (21 August 2009) by Georg Fritz, Christiane Koller, Korinna Burdack, et al.Larissa Tetsch, Ina Haneburger, Kirsten Jung, Ulrich Gerland posted to stress_response quantitative_data mathematical_model kinetics gene_expression e_coli bacteria by jjray on 2009-10-01 15:34:58 as
	Maximum likelihood and the single receptor [My Copy] (25 Sep 2009) by Robert G. Endres, Ned S. Wingreen posted to signaling receptor physical_limit chemotaxis bacteria by jjray on 2009-09-28 20:13:34 as
	Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16399-16404. by Maria Valencia-Burton, Ankita Shah, Jason Sutin, et al.Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, Natalia E. Broude posted to transcription spatial mrna kinetics gene_expression bacteria by jjray on 2009-09-27 16:59:03 as along with 1 person OliverHarriman
	Global Analysis of Extracytoplasmic Stress Signaling in Escherichia coli [My Copy] PLoS Genet, Vol. 5, No. 9. (18 September 2009), e1000651. by Stéphanie Bury-Moné, Yanoura Nomane, Nancie Reymond, et al.Romain Barbet, Eric Jacquet, Sandrine Imbeaud, Annick Jacq, Philippe Bouloc posted to stress_response signaling e_coli bacteria by jjray on 2009-09-26 23:21:21 as
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to synthetic_biology gene_expression e_coli bacteria by jjray on 2009-09-26 15:41:38 as along with 6 people and 1 group dbikard RasmusJensen pala0088 Vincent_Rouilly michaelbarton bmduggan Synthetic Biology
	Bacteria as computers making computers [My Copy] FEMS Microbiology Reviews, Vol. 33, No. 1. (January 2009), pp. 3-26. by Antoine Danchin posted to theory information genome evolution computation bacteria by jjray on 2009-09-16 17:01:08 as along with 6 people and 1 group MurphysLab bertelsen marcio druvus Borelli dbikard Synthetic Biology
	Subcellular localization of a bacterial regulatory RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16405-16409. by Jay H. Russell, Kenneth C. Keiler posted to translation spatial rrna localization gene_regulation bacteria by jjray on 2009-09-13 06:16:46 as
	Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli [My Copy] Genome Biology, Vol. 5, No. 11. (2004), R87. by Brian Peter, Javier Arsuaga, Adam Breier, Arkady Khodursky, Patrick Brown, Nicholas Cozzarelli posted to transcription supercoiling gene_expression e_coli bacteria by jjray on 2009-09-10 17:07:30 as along with 2 people comb supercoiling
	Recombination Speeds Adaptation by Reducing Competition between Beneficial Mutations in Populations of Escherichia coli [My Copy] PLoS Biol, Vol. 5, No. 9. (21 August 2007), e225. by Tim F. Cooper posted to recombination population_genetics evolution e_coli bacteria by jjray on 2009-08-31 18:42:53 as along with 1 person yuhc
	Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000455. by Jing Tang, William P. Hanage, Christophe Fraser, Jukka Corander posted to recombination population_genetics evolution bacteria by jjray on 2009-08-30 18:04:51 as along with 3 people and 1 group operon skembel djkt iSEEM
	Precise Temporal Modulation in the Response of the SOS DNA Repair Network in Individual Bacteria [My Copy] PLoS Biol, Vol. 3, No. 7. (21 June 2005), e238. by Nir Friedman, Shuki Vardi, Michal Ronen, Uri Alon, Joel Stavans posted to stochastic sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:36:15 as along with 9 people and 1 group dbikard balabu yyfwuhan cambray rklancer madhadron nickluscombe comb RyanGray EBI-regulation
	The SOS regulatory system: control of its state by the level of RecA protease. [My Copy] Journal of molecular biology, Vol. 167, No. 4. (15 July 1983), pp. 791-808. by J. W. Little posted to sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:35:17 as
	The bacterial LexA transcriptional repressor. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 1. (January 2009), pp. 82-93. by M. Butala, D. Zgur-Bertok, S. J. Busby posted to sos review feedback bacteria by jjray on 2009-08-29 06:34:56 as
	Autogenous and nonautogenous control of response in a genetic network [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12718-12723. by Francisco M. Camas, Jesús Blázquez, Juan F. Poyatos posted to sos response_time gene_regulation feedback e_coli bacteria by jjray on 2009-08-29 06:21:22 as along with 1 person aalibes
	The Population and Evolutionary Dynamics of Homologous Gene Recombination in Bacteria [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000601. by Bruce R. Levin, Omar E. Cornejo posted to recombination population_genetics evolutionary_dynamics evolution bacteria by jjray on 2009-08-28 20:11:38 as along with 1 person barriot
	Nonlinear protein degradation and the function of genetic circuits. [My Copy] Proc Natl Acad Sci U S A (22 June 2005) by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to nonlinear gene_regulation degradation cooperativity bacteria by jjray on 2009-08-26 19:05:07 as along with 3 people and 1 group rklancer dbikard discreteonyxorb TranscriptionalRegulationWithThermodynamicModels
	On schemes of combinatorial transcription logic [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 9. (29 April 2003), pp. 5136-5141. by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to synthetic_biology network gene_regulation bacteria by jjray on 2009-08-26 19:02:45 as along with 6 people and 1 group akraemer dbikard siebert balajis olympos discreteonyxorb Synthetic Biology
	Designing sequential transcription logic: a simple genetic circuit for conditional memory. [My Copy] Systems and synthetic biology, Vol. 1, No. 2. (21 April 2007), pp. 89-98. by Georg Fritz, Nicolas E. Buchler, Terence Hwa, Ulrich Gerland posted to transcription synthetic_biology network gene_regulation bacteria by jjray on 2009-08-26 18:59:08 as along with 1 group Synthetic Biology
	Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway [My Copy] PLoS Biol, Vol. 7, No. 8. (18 August 2009), e1000171. by Linda Løvdok, Kajetan Bentele, Nikita Vladimirov, et al.Anette Müller, Ferencz S. Pop, Dirk Lebiedz, Markus Kollmann, Victor Sourjik posted to signaling robustness evolution chromosome_organization chemotaxis bacteria by jjray on 2009-08-25 17:31:36 as along with 2 people vladimirov biomcgary
	Structure and expression of the ompB operon, the regulatory locus for the outer membrane porin regulon in Salmonella typhimurium LT-21 [My Copy] Journal of Molecular Biology*, Vol. 201, No. 4. (June 1988), pp. 663-673. by P. Liljestrom posted to two-component_system signaling salmonella operon chromosome_organization bacteria by jjray on 2009-08-25 17:29:34 as
	Noisy cell growth rate leads to fluctuating protein concentration in bacteria [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036015. by Saburo Tsuru, Junya Ichinose, Akiko Kashiwagi, Bei-Wen Ying, Kunihiko Kaneko, Tetsuya Yomo posted to noise growth_rate extrinsic_noise bacteria by jjray on 2009-08-23 14:20:17 as
	Switching and growth for microbial populations in catastrophic responsive environments [My Copy] (10 Aug 2009) by Paolo Visco, Rosalind J. Allen, Satya N. Majumdar, Martin R. Evans posted to phenotypic_heterogeneity evolution bacteria by jjray on 2009-08-19 17:35:13 as
	A model for the statistical fluctuations of protein numbers in a microbial population. [My Copy] Journal of theoretical biology, Vol. 71, No. 4. (20 April 1978), pp. 587-603. by O. G. Berg posted to stochastic population mathematical_model biochemistry bacteria by jjray on 2009-08-18 18:07:18 as along with 1 person sjayanthi
	On the accessibility of adaptive phenotypes of a bacterial metabolic network [My Copy] (14 Aug 2009) by Wilfred Ndifon, Joshua B. Plotkin, Jonathan Dushoff posted to simulation network metabolism evolutionary_dynamics evolution e_coli bacteria adaptation by jjray on 2009-08-17 17:45:02 as along with 1 person apocapoc

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bacteria	276
mathematical_model	257
gene_regulation	251
stochastic	198
signaling	153
evolution	143
mycobacterium_tuberculosis	139
noise	132
network	130
two-component_system	130
e_coli	128
feedback	128
review	103
biophysics	101
gene_expression	75
t_cell	60
immune_activation	59
method	57
biochemistry	56
transcription	55
bacillus_subtilis	54
tnf	53
murine_macrophage	51
physics	51
chemokine	50
theory	50
chemotaxis	48
robustness	44
metabolism	38
network_motifs	38
nitric_oxide	38
quantitative_data	37
sporulation	37
systems_approach	37
thermodynamics	36
simulation	34
bistability	33
dynamical_system	33
spo0	33
phosphorylation	32
ifn-gamma	30
phopq	30
regulatory_t_cell	30
development	29
human_macrophage	29
information	29
mrna	29
promoter	29
kinetics	28
oscillation	28
granuloma	27
synthetic_biology	26
transcriptional_regulation	26
nf-kappab	25
spatial	25
stability	25
eukaryote	23
macrophage	22
dynamics	21
gillespie_algorithm	21
salmonella	21
yeast	21
biochemical_systems_theory	20
complexity	20
growth_rate	20
sigma_factor	20
cytokine	19
iron	19
positive_feedback	19
statistical_mechanics	19
non-equilibrium	18
apoptosis	17
evolutionary_dynamics	17
gene_order	17
opinion	17
sensitivity_analysis	17
toll-like_receptor	17
diffusion	16
history	16
host-pathogen_interaction	16
human_monocyte	16
inos	16
bara	15
chromosome_organization	15
mathematically_controlled_comparison	15
phenotypic_heterogeneity	15
adaptation	14
feedforward	14
game_theory	14
chemical_reaction	13
computation	13
crosstalk	13
degradation	13
design_principles	13
dna_binding	13
gene_network	13
immune_cell_kinetics	13
quantum_mechanics	13
csra	12
response_time	12
sensitivity	12
translation	12
ccl5	11
energy	11
genetics	11
macrophage_activation	11
optimization	11
transcriptional_burst	11
ccl2	10
distribution	10
ecology	10
langevin	10
mathematics	10
mutation	10
neutrophil	10
stress_response	10
textbook	10
3-dimensional_structure	9
atp	9
dna	9
immunology	9
lam	9
lps	9
modularity	9
mouse	9
operon	9
population_genetics	9
recruitment	9
statistical_method	9
statistical_physics	9
brownian_motion	8
cooperativity	8
criticality	8
entropy	8
frequency	8
human	8
hysteresis	8
large_deviations	8
lung	8
mathematical_biology	8
monte_carlo	8
neuroscience	8
parameter	8
quorum_sensing	8
recombination	8
statistics	8
temporal_response	8
chaos	7
delay	7
enzyme	7
fokker-planck	7
intracellular	7
phagocytosis	7
phenotype	7
protein_interactions	7
stem_cell	7
agent_based	6
bifurcation	6
canalization	6
conformational_dynamics	6
data_fitting	6
detailed_balance	6
drosophila	6
economics	6
evolvability	6
graph_theory	6
jf	6
macrophage_deactivation	6
multiscale	6
mycobacterium_bovis	6
phagosome	6
philosophy_of_science	6
population	6
power_law	6
protein_folding	6
socs1	6
synergistic_signals	6
timescale	6
transcriptional_reprogramming	6
algorithm	5
biology_as_engineering	5
ergodic	5
fluid_flow	5
geometric	5
inflammation	5
mechanism	5
necrosis	5
pattern_formation	5
prokaryote	5
ratchet	5
receptor	5
rni	5
signaling_cascade	5
sos	5
stat1	5
tor	5
antagonist	4
bursting	4
cell_polarization	4
chemical_physics	4
commentary	4
cxcl9	4
cxcr3	4
dose_response	4
dynamic_range	4
editorial	4
epistasis	4
fitness_landscape	4
fluctuation-dissipation	4
genome	4
irf-1	4
kinetic_proofreading	4
latency	4
markov_chain	4
mutual_information	4
network_inference	4
pathogen_killing	4
persister	4
phylogeny	4
protein_binding	4
rare_events	4
rate	4
repressilator	4
shea-ackers	4
steady_state	4
synergistic	4
tau_leap	4
zero-order_ultrasensitivity	4
analysis	3
antibiotics	3
bayesian_inference	3
b_cell	3
book	3
ccr5	3
cell_cycle	3
cell_division	3
co-culture	3
competence	3
correlation	3
ctl	3
data	3
demand_theory	3
differential_equations	3
early_immunity	3
endothelium	3
extrinsic_noise	3
ferritin	3
flow_cytometry	3
foxp3	3
fractal	3
gibbs	3
hamiltonian	3
heat_shock	3
historical_contingency	3
lymphocyte	3
mode-of-control	3
mutational_entropy	3
neural_network	3
nucleus	3
phobr	3
physical_limit	3
potential	3
probability	3
random_walk	3
reaction-diffusion	3
receptor_binding	3
replicator_equation	3
roi	3
scale-free	3
shannon_entropy	3
siderophore	3
signal_specificity	3
single_cell	3
spin_glass	3
threshold_signal	3
timing	3
trade-off	3
tsc	3
adhesion_molecules	2
adiabatic_elimination	2
artificial_evolution	2
autocrine_paracrine	2
binding_constant	2
biological_uncertainty_principle	2
bliss_independence	2
boolean_network	2
bottleneck	2
brownian_dynamics	2
ccr2	2
cell_size	2
chemistry	2
chemokine_paradox	2
chromatin	2
convergent_evolution	2
cooperation	2
copy_number	2
cost-benefit	2
cytoplasm	2
database	2
deconvolution	2
dense_overlapping_regulon	2
dimerization	2
dual_feedback_motif	2
endothelial_cell	2
es_cell	2
flexibility	2
fluorescence	2
fragility	2
genetic_linkage	2
global_regulator	2
goldbeter-koshland	2
hierarchy	2
horizontal_gene_transfer	2
ider	2
intrinsic_protein_disorder	2
in_vitro	2
labile_iron_pool	2
macrodomain	2
macrophage_mtb_moi_upper_limit	2
mammalian	2
microarray	2
microenvironment	2
molecular_crowding	2
motif_compositions	2
mutational_robustness	2
nadph_phagocyte_oxidase	2
nonlinear	2
notes	2
nucleosome	2
numerical_methods	2
ornsteinuhlenbeck	2
overexpression	2
pde	2
periodic	2
photosynthesis	2
physical_chemistry	2
piecewise_power-law	2
poisson_process	2
polymer	2
proportion	2
rat	2
rate_saturation	2
rat_macrophage	2
regulon	2
rrna	2
secretion	2
spectral	2
statistical_model	2
statistical_sensitivity	2
strong_inference	2
survival_strategy	2
systems_biology	2
time_series	2
tumor	2
turbulence	2
type-1_ifn	2
ultrasensitivity	2
uncertainty_principle	2
writing	2
antibody	1
approximation	1
astrobiology	1
behavior	1
branching_process	1
causality	1
c_elegans	1
cell_turn_angle	1
cellular_automaton	1
clinical	1
codon_bias	1
coherent_coupling	1
component_relevance_ranking	1
convolution	1
cxcl11	1
cytochrome_oxidase	1
cytotoxic	1
dendritic_cell	1
deterministic	1
dna_replication	1
drift	1
eigenworm	1
elongation	1
endoplasmic_reticulum	1
equilibrium	1
ess	1
estimation	1
falsification	1
fasl	1
fdr	1
filter	1
focal_secretion	1
formyl_peptides	1
free_energy	1
genetic_variation	1
gfp	1
gradient	1
granular_dynamics	1
group_selection	1
half-life	1
hilbert_space	1
hiv	1
homeostatic_circuit	1
hormesis	1
il-10	1
il-12	1
il-2	1
induction	1
infliximab	1
inhertiance	1
intron	1
iron_percent_acquisition	1
islets_of_langerhans	1
just-in-time	1
kinetic_insulation	1
kolmogorov_complexity	1
kolmogorov-smirnov	1
laplace_transform	1
lattice	1
leishmania_major	1
lhs	1
limit_cycle	1
lip	1
lipid_domain	1
localization	1
lymph_node	1
manhattan_project	1
mass-action	1
maximum_likelihood	1
memristor	1
met-leu-phe	1
metropolis-hastings	1
metropolis_rule	1
michaelis-menten	1
microfluidics	1
migration	1
mitochondria	1
mixed_feedback	1
molecular_dynamics	1
motility	1
mtsa-10	1
multimerization	1
mycobacteria	1
mycobacterium_marinum	1
mycobacterium_smegmatis	1
myd88	1
myosin	1
myxobacteria	1
neutral_evolution	1
nkt	1
non-human_primate	1
organization	1
overshoot	1
oxidative_stress	1
percolation	1
phase_coherence	1
phase_transition	1
phenotypic_mutation	1
philosophy	1
pleiotropy	1
potts_model	1
ppar-gamma	1
propensity	1
proteasome	1
protein_export	1
protein_function	1
proteome	1
quantitative_response	1
quantum_field_theory	1
rapamycin	1
reciprocal_adaptation	1
refseq	1
relativity	1
ribosome	1
rna	1
rnase	1
sampling	1
sde	1
series	1
siphon	1
sirna	1
smoluchowski_diffusion	1
speculation	1
stochastic_resonance	1
stoichiometry	1
substrate_competition	1
supercoiling	1
superoxide	1
superstatistics	1
symbolic_dynamics	1
szilard	1
tgfbeta	1
th1	1
time	1
transcriptional_attentuation	1
transendothelial_migration	1
triad	1
volume	1

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