jjray's bacteria [at least 200 articles] Export

Recent papers added to jjray's library classified by the tag bacteria. You can also see everyone's bacteria.

	Transcription, Translation, and the Evolution of Specialists and Generalists [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2661-2678. by Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean posted to translation transcription stress_response gene_expression evolution e_coli bacteria by jjray on 2009-11-10 16:14:56 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 3 people JeremyZucker dbikard rsaito
	Experimental evolution of bet hedging [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 90-93. by Hubertus J. E. Beaumont, Jenna Gallie, Christian Kost, Gayle C. Ferguson, Paul B. Rainey posted to stochastic evolution bacteria by jjray on 2009-11-04 19:29:15 as along with 6 people dbikard yyfwuhan Winzer pkm megraw pedrobeltrao
	Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000671. by Daniel M. Stoebel, Karsten Hokamp, Michael S. Last, Charles J. Dorman posted to stress_response sigma_factor evolution e_coli bacteria by jjray on 2009-11-03 23:33:51 as
	Invariant Distribution of Promoter Activities in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (23 October 2009), e1000545. by Alon Zaslaver, Shai Kaplan, Anat Bren, et al.Adrian Jinich, Avi Mayo, Erez Dekel, Uri Alon, Shalev Itzkovitz posted to promoter gene_expression e_coli distribution bacteria by jjray on 2009-11-03 23:28:45 as along with 1 person dbikard
	Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 512-522. by Tolga Çağatay, Marc Turcotte, Michael B. Elowitz, Jordi Garcia-Ojalvo, Gürol M. Süel posted to stochastic robustness noise network gene_regulation dynamics development bacteria by jjray on 2009-11-03 21:37:58 as along with 3 people dbikard samubernard venancio
	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to population_genetics evolution e_coli bacteria adaptation by jjray on 2009-10-21 19:27:03 as along with 26 people and 4 groups kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm djkt treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks BergmanLab
	Bacillus subtilis spreads by surfing on waves of surfactant [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18109-18113. by Thomas E. Angelini, Marcus Roper, Roberto Kolter, David A. Weitz, Michael P. Brenner posted to spatial motility mathematical_model bacteria bacillus_subtilis by jjray on 2009-10-14 15:37:22 as
	Optimal cytoplasmatic density and flux balance model under macromolecular crowding effects [My Copy] (11 Oct 2009) by Alexei Vazquez posted to optimization metabolism e_coli diffusion cytoplasm bacteria by jjray on 2009-10-13 16:45:07 as along with 1 person apocapoc
	Induction Kinetics of a Conditional pH Stress Response System in Escherichia coli [My Copy] Journal of Molecular Biology (21 August 2009) by Georg Fritz, Christiane Koller, Korinna Burdack, et al.Larissa Tetsch, Ina Haneburger, Kirsten Jung, Ulrich Gerland posted to stress_response quantitative_data mathematical_model kinetics gene_expression e_coli bacteria by jjray on 2009-10-01 15:34:58 as
	Maximum likelihood and the single receptor [My Copy] (25 Sep 2009) by Robert G. Endres, Ned S. Wingreen posted to signaling receptor physical_limit chemotaxis bacteria by jjray on 2009-09-28 20:13:34 as
	Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16399-16404. by Maria Valencia-Burton, Ankita Shah, Jason Sutin, et al.Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, Natalia E. Broude posted to transcription spatial mrna kinetics gene_expression bacteria by jjray on 2009-09-27 16:59:03 as along with 1 person OliverHarriman
	Global Analysis of Extracytoplasmic Stress Signaling in Escherichia coli [My Copy] PLoS Genet, Vol. 5, No. 9. (18 September 2009), e1000651. by Stéphanie Bury-Moné, Yanoura Nomane, Nancie Reymond, et al.Romain Barbet, Eric Jacquet, Sandrine Imbeaud, Annick Jacq, Philippe Bouloc posted to stress_response signaling e_coli bacteria by jjray on 2009-09-26 23:21:21 as
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to synthetic_biology gene_expression e_coli bacteria by jjray on 2009-09-26 15:41:38 as along with 6 people and 1 group dbikard RasmusJensen pala0088 Vincent_Rouilly michaelbarton bmduggan Synthetic Biology
	Bacteria as computers making computers [My Copy] FEMS Microbiology Reviews, Vol. 33, No. 1. (January 2009), pp. 3-26. by Antoine Danchin posted to theory information genome evolution computation bacteria by jjray on 2009-09-16 17:01:08 as along with 6 people and 1 group MurphysLab bertelsen marcio druvus Borelli dbikard Synthetic Biology
	Subcellular localization of a bacterial regulatory RNA [My Copy] Proceedings of the National Academy of Sciences (11 September 2009) by Jay H. Russell, Kenneth C. Keiler posted to translation spatial rrna localization gene_regulation bacteria by jjray on 2009-09-13 06:16:46 as
	Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli [My Copy] Genome Biology, Vol. 5, No. 11. (2004), R87. by Brian Peter, Javier Arsuaga, Adam Breier, Arkady Khodursky, Patrick Brown, Nicholas Cozzarelli posted to transcription supercoiling gene_expression e_coli bacteria by jjray on 2009-09-10 17:07:30 as along with 2 people comb supercoiling
	Recombination Speeds Adaptation by Reducing Competition between Beneficial Mutations in Populations of Escherichia coli [My Copy] PLoS Biol, Vol. 5, No. 9. (21 August 2007), e225. by Tim F. Cooper posted to recombination population_genetics evolution e_coli bacteria by jjray on 2009-08-31 18:42:53 as along with 1 person yuhc
	Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000455. by Jing Tang, William P. Hanage, Christophe Fraser, Jukka Corander posted to recombination population_genetics evolution bacteria by jjray on 2009-08-30 18:04:51 as along with 3 people and 1 group operon skembel djkt iSEEM
	Precise Temporal Modulation in the Response of the SOS DNA Repair Network in Individual Bacteria [My Copy] PLoS Biol, Vol. 3, No. 7. (21 June 2005), e238. by Nir Friedman, Shuki Vardi, Michal Ronen, Uri Alon, Joel Stavans posted to stochastic sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:36:15 as along with 9 people and 1 group dbikard balabu yyfwuhan cambray rklancer madhadron nickluscombe comb RyanGray EBI-regulation
	The SOS regulatory system: control of its state by the level of RecA protease. [My Copy] Journal of molecular biology, Vol. 167, No. 4. (15 July 1983), pp. 791-808. by J. W. Little posted to sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:35:17 as
	The bacterial LexA transcriptional repressor. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 1. (January 2009), pp. 82-93. by M. Butala, D. Zgur-Bertok, S. J. Busby posted to sos review feedback bacteria by jjray on 2009-08-29 06:34:56 as
	Autogenous and nonautogenous control of response in a genetic network [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12718-12723. by Francisco M. Camas, Jesús Blázquez, Juan F. Poyatos posted to sos response_time gene_regulation feedback e_coli bacteria by jjray on 2009-08-29 06:21:22 as along with 1 person aalibes
	The Population and Evolutionary Dynamics of Homologous Gene Recombination in Bacteria [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000601. by Bruce R. Levin, Omar E. Cornejo posted to recombination population_genetics evolutionary_dynamics evolution bacteria by jjray on 2009-08-28 20:11:38 as along with 1 person barriot
	Nonlinear protein degradation and the function of genetic circuits. [My Copy] Proc Natl Acad Sci U S A (22 June 2005) by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to nonlinear gene_regulation degradation cooperativity bacteria by jjray on 2009-08-26 19:05:07 as along with 3 people and 1 group rklancer dbikard discreteonyxorb TranscriptionalRegulationWithThermodynamicModels
	On schemes of combinatorial transcription logic [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 9. (29 April 2003), pp. 5136-5141. by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to synthetic_biology network gene_regulation bacteria by jjray on 2009-08-26 19:02:45 as along with 6 people and 1 group akraemer dbikard siebert balajis olympos discreteonyxorb Synthetic Biology
	Designing sequential transcription logic: a simple genetic circuit for conditional memory. [My Copy] Systems and synthetic biology, Vol. 1, No. 2. (21 April 2007), pp. 89-98. by Georg Fritz, Nicolas E. Buchler, Terence Hwa, Ulrich Gerland posted to transcription synthetic_biology network gene_regulation bacteria by jjray on 2009-08-26 18:59:08 as along with 1 group Synthetic Biology
	Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway [My Copy] PLoS Biol, Vol. 7, No. 8. (18 August 2009), e1000171. by Linda Løvdok, Kajetan Bentele, Nikita Vladimirov, et al.Anette Müller, Ferencz S. Pop, Dirk Lebiedz, Markus Kollmann, Victor Sourjik posted to signaling robustness evolution chromosome_organization chemotaxis bacteria by jjray on 2009-08-25 17:31:36 as along with 2 people vladimirov biomcgary
	Structure and expression of the ompB operon, the regulatory locus for the outer membrane porin regulon in Salmonella typhimurium LT-21 [My Copy] Journal of Molecular Biology*, Vol. 201, No. 4. (June 1988), pp. 663-673. by P. Liljestrom posted to two-component_system signaling salmonella operon chromosome_organization bacteria by jjray on 2009-08-25 17:29:34 as
	Noisy cell growth rate leads to fluctuating protein concentration in bacteria [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036015. by Saburo Tsuru, Junya Ichinose, Akiko Kashiwagi, Bei-Wen Ying, Kunihiko Kaneko, Tetsuya Yomo posted to noise growth_rate extrinsic_noise bacteria by jjray on 2009-08-23 14:20:17 as
	Switching and growth for microbial populations in catastrophic responsive environments [My Copy] (10 Aug 2009) by Paolo Visco, Rosalind J. Allen, Satya N. Majumdar, Martin R. Evans posted to phenotypic_heterogeneity evolution bacteria by jjray on 2009-08-19 17:35:13 as
	A model for the statistical fluctuations of protein numbers in a microbial population. [My Copy] Journal of theoretical biology, Vol. 71, No. 4. (20 April 1978), pp. 587-603. by O. G. Berg posted to stochastic population mathematical_model biochemistry bacteria by jjray on 2009-08-18 18:07:18 as along with 1 person sjayanthi
	On the accessibility of adaptive phenotypes of a bacterial metabolic network [My Copy] (14 Aug 2009) by Wilfred Ndifon, Joshua B. Plotkin, Jonathan Dushoff posted to simulation network metabolism evolutionary_dynamics evolution e_coli bacteria adaptation by jjray on 2009-08-17 17:45:02 as along with 1 person apocapoc
	Noise effect on persistence of memory in a positive-feedback gene regulatory circuit [My Copy] Physical Review E, Vol. 80, No. 1. (July 2009) by Jun Tang, Xianqing Yang, Jun Ma, Ya Jia posted to positive_feedback noise gene_regulation feedback bacteria by jjray on 2009-08-14 18:02:04 as
	Relation of Intracellular Signal Levels and Promoter Activities in the gal Regulon of Escherichia coli [My Copy] Journal of Molecular Biology (23 June 2009) by Sandeep Krishna, László Orosz, Kim Sneppen, Sankar Adhya, Szabolcs Semsey posted to bacteria e_coli gene_regulation mathematical_model metabolism operon signaling by jjray on 2009-08-10 17:36:51 as
	The two-component network and the general stress sigma factor RpoS (sigma S) in Escherichia coli. [My Copy] Advances in experimental medicine and biology, Vol. 631 (2008), pp. 40-53. by Regine Hengge posted to bacteria gene_regulation review signaling stress_response two-component_system by jjray on 2009-08-07 15:37:37 as
	Evolution of Transcriptional Regulatory Circuits in Bacteria [My Copy] Cell, Vol. 138, No. 2. (23 July 2009), pp. 233-244. by J. Christian Perez, Eduardo A. Groisman posted to bacteria evolution gene_regulation network review transcriptional_regulation by jjray on 2009-07-24 15:49:50 as along with 1 person and 1 group leliavski Gene Regulation
	Partial penetrance facilitates developmental evolution in bacteria [My Copy] Nature, Vol. 460, No. 7254. (05 July 2009), pp. 510-514. by Avigdor Eldar, Vasant K. Chary, Panagiotis Xenopoulos, et al.Michelle E. Fontes, Oliver C. Loson, Jonathan Dworkin, Patrick J. Piggot, Michael B. Elowitz posted to bacillus_subtilis bacteria development evolution sporulation by jjray on 2009-07-22 19:35:25 as along with 8 people and 1 group ellarond bpcusack psique absterga biomcgary maren phoenixzxl jbhiatt Journal picks
	High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (15 July 2009), pp. 12412-12417. by Sujay Chattopadhyay, Scott J. Weissman, Vladimir N. Minin, Thomas A. Russo, Daniel E. Dykhuizen, Evgeni V. Sokurenko posted to bacteria e_coli evolution mutation by jjray on 2009-07-16 16:50:55 as along with 2 people jasontsai zwang
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted to yeast adaptation bacteria e_coli evolution by jjray on 2009-07-08 19:40:41 as along with 8 people and 1 group yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta djkt michaelbarton iSEEM
	Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy [My Copy] PLoS Biol, Vol. 7, No. 6. (23 June 2009), e1000137. by Derek Greenfield, Ann L. McEvoy, Hari Shroff, et al.Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt posted to bacteria chemotaxis e_coli protein_interactions signaling by jjray on 2009-07-01 17:10:58 as along with 4 people tomd66 schmidtm robfsouza dbikard
	Kinetic Buffering of Cross Talk between Bacterial Two-Component Sensors [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 380-393. by Eli S. Groban, Elizabeth J. Clarke, Howard M. Salis, Susan M. Miller, Christopher A. Voigt posted to bacteria crosstalk signaling two-component_system by jjray on 2009-06-30 16:08:58 as along with 1 person and 1 group orr KeatingJClub
	Avoiding dangerous missense: thermophiles display especially low mutation rates. [My Copy] PLoS genetics, Vol. 5, No. 6. (19 June 2009), e1000520. by John W. Drake posted to bacteria evolution mutation by jjray on 2009-06-26 22:09:09 as along with 4 people jasontsai operon michaelbarton bpcusack
	An externally tunable bacterial band-pass filter. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10135-10140. by T. Sohka, R. A. Heins, R. M. Phelan, J. M. Greisler, C. A. Townsend, M. Ostermeier posted to bacteria filter signaling synthetic_biology by jjray on 2009-06-26 17:53:22 as along with 4 people dbikard Vincent_Rouilly austin adampah
	Functional Characterization in Vitro of All Two-component Signal Transduction Systems from Escherichia coli [My Copy] J. Biol. Chem., Vol. 280, No. 2. (14 January 2005), pp. 1448-1456. by Kaneyoshi Yamamoto, Kiyo Hirao, Taku Oshima, Hirofumi Aiba, Ryutaro Utsumi, Akira Ishihama posted to bacteria crosstalk e_coli phobr phopq two-component_system by jjray on 2009-06-15 18:47:26 as
	Chaperonin overexpression promotes genetic variation and enzyme evolution. [My Copy] Nature, Vol. 459, No. 7247. (4 June 2009), pp. 668-673. by Nobuhiko Tokuriki, Dan S. Tawfik posted to bacteria e_coli evolution protein_folding stability by jjray on 2009-06-03 21:33:24 as along with 3 people yyfwuhan absterga zwang
	Toolbox model of evolution of prokaryotic metabolic networks and their regulation [My Copy] Proceedings of the National Academy of Sciences (29 May 2009) by Sergei Maslov, Sandeep Krishna, Tin Y. Pang, Kim Sneppen posted to bacteria evolution metabolism network prokaryote by jjray on 2009-06-01 17:07:29 as along with 3 people deanmalmgren nyyu cmtrent
	Mutual Information between Input and Output Trajectories of Biochemical Networks [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218101. by Filipe Tostevin, Pieter R. ten Wolde posted to bacteria biochemistry chemotaxis e_coli information network signaling by jjray on 2009-05-29 20:33:51 as
	Differential Affinity and Catalytic Activity of CheZ in <italic>E. coli</italic> Chemotaxis [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (8 May 2009), e1000378. by Siebe B. van Albada, Pieter R. ten Wolde edited by Christopher Rao posted to bacteria chemotaxis e_coli phosphorylation signaling two-component_system by jjray on 2009-05-29 16:44:25 as
	Information processing and signal integration in bacterial quorum sensing [My Copy] (25 May 2009) by Pankaj Mehta, Sidhartha Goyal, Tao Long, Bonnie Bassler, Ned S. Wingreen posted to bacteria information mathematical_model quorum_sensing signaling by jjray on 2009-05-29 16:18:09 as

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bacteria	259
mathematical_model	255
gene_regulation	251
stochastic	198
signaling	153
evolution	141
mycobacterium_tuberculosis	139
noise	131
network	129
feedback	127
two-component_system	127
e_coli	114
biophysics	99
review	99
gene_expression	73
t_cell	60
immune_activation	59
biochemistry	55
method	55
transcription	55
bacillus_subtilis	53
tnf	53
murine_macrophage	51
chemokine	50
physics	49
chemotaxis	48
theory	47
robustness	43
network_motifs	38
nitric_oxide	38
metabolism	37
quantitative_data	37
systems_approach	37
sporulation	36
thermodynamics	35
bistability	33
spo0	33
dynamical_system	32
simulation	32
ifn-gamma	30
phopq	30
phosphorylation	30
regulatory_t_cell	30
development	29
human_macrophage	29
information	29
promoter	29
oscillation	28
granuloma	27
kinetics	27
synthetic_biology	26
transcriptional_regulation	26
nf-kappab	25
spatial	25
eukaryote	22
macrophage	22
dynamics	21
gillespie_algorithm	21
salmonella	21
yeast	21
biochemical_systems_theory	20
complexity	20
sigma_factor	20
cytokine	19
growth_rate	19
iron	19
positive_feedback	19
statistical_mechanics	18
apoptosis	17
evolutionary_dynamics	17
gene_order	17
mrna	17
non-equilibrium	17
opinion	17
sensitivity_analysis	17
toll-like_receptor	17
history	16
host-pathogen_interaction	16
human_monocyte	16
inos	16
bara	15
chromosome_organization	15
diffusion	15
mathematically_controlled_comparison	15
phenotypic_heterogeneity	15
adaptation	14
feedforward	14
game_theory	14
chemical_reaction	13
computation	13
crosstalk	13
design_principles	13
dna_binding	13
gene_network	13
immune_cell_kinetics	13
quantum_mechanics	13
csra	12
response_time	12
stability	12
translation	12
ccl5	11
energy	11
genetics	11
macrophage_activation	11
sensitivity	11
transcriptional_burst	11
ccl2	10
distribution	10
ecology	10
langevin	10
mathematics	10
neutrophil	10
optimization	10
stress_response	10
textbook	10
3-dimensional_structure	9
atp	9
lam	9
lps	9
modularity	9
mouse	9
mutation	9
population_genetics	9
recruitment	9
statistical_method	9
statistical_physics	9
brownian_motion	8
cooperativity	8
criticality	8
dna	8
frequency	8
human	8
hysteresis	8
immunology	8
lung	8
mathematical_biology	8
monte_carlo	8
neuroscience	8
operon	8
parameter	8
quorum_sensing	8
recombination	8
statistics	8
temporal_response	8
chaos	7
delay	7
entropy	7
enzyme	7
fokker-planck	7
intracellular	7
phagocytosis	7
protein_interactions	7
stem_cell	7
agent_based	6
bifurcation	6
canalization	6
conformational_dynamics	6
data_fitting	6
detailed_balance	6
drosophila	6
economics	6
evolvability	6
graph_theory	6
jf	6
large_deviations	6
macrophage_deactivation	6
multiscale	6
mycobacterium_bovis	6
phagosome	6
phenotype	6
philosophy_of_science	6
population	6
power_law	6
protein_folding	6
socs1	6
synergistic_signals	6
timescale	6
transcriptional_reprogramming	6
algorithm	5
biology_as_engineering	5
ergodic	5
fluid_flow	5
geometric	5
inflammation	5
mechanism	5
necrosis	5
pattern_formation	5
prokaryote	5
ratchet	5
receptor	5
rni	5
signaling_cascade	5
sos	5
stat1	5
tor	5
antagonist	4
bursting	4
cell_polarization	4
chemical_physics	4
commentary	4
cxcl9	4
cxcr3	4
degradation	4
dose_response	4
dynamic_range	4
editorial	4
epistasis	4
fitness_landscape	4
fluctuation-dissipation	4
genome	4
irf-1	4
kinetic_proofreading	4
latency	4
markov_chain	4
mutual_information	4
network_inference	4
pathogen_killing	4
persister	4
phylogeny	4
protein_binding	4
repressilator	4
shea-ackers	4
steady_state	4
synergistic	4
tau_leap	4
zero-order_ultrasensitivity	4
analysis	3
antibiotics	3
bayesian_inference	3
b_cell	3
book	3
ccr5	3
cell_cycle	3
cell_division	3
co-culture	3
competence	3
correlation	3
ctl	3
data	3
demand_theory	3
differential_equations	3
early_immunity	3
endothelium	3
extrinsic_noise	3
ferritin	3
flow_cytometry	3
foxp3	3
fractal	3
gibbs	3
hamiltonian	3
heat_shock	3
historical_contingency	3
lymphocyte	3
mode-of-control	3
mutational_entropy	3
neural_network	3
nucleus	3
phobr	3
physical_limit	3
potential	3
probability	3
random_walk	3
rate	3
reaction-diffusion	3
receptor_binding	3
replicator_equation	3
roi	3
scale-free	3
shannon_entropy	3
siderophore	3
signal_specificity	3
single_cell	3
spin_glass	3
threshold_signal	3
timing	3
trade-off	3
tsc	3
adhesion_molecules	2
adiabatic_elimination	2
artificial_evolution	2
autocrine_paracrine	2
binding_constant	2
biological_uncertainty_principle	2
bliss_independence	2
boolean_network	2
bottleneck	2
brownian_dynamics	2
ccr2	2
cell_size	2
chemistry	2
chemokine_paradox	2
chromatin	2
convergent_evolution	2
cooperation	2
copy_number	2
cost-benefit	2
cytoplasm	2
database	2
deconvolution	2
dense_overlapping_regulon	2
dimerization	2
dual_feedback_motif	2
endothelial_cell	2
es_cell	2
flexibility	2
fluorescence	2
fragility	2
genetic_linkage	2
global_regulator	2
goldbeter-koshland	2
hierarchy	2
horizontal_gene_transfer	2
ider	2
intrinsic_protein_disorder	2
in_vitro	2
labile_iron_pool	2
macrodomain	2
macrophage_mtb_moi_upper_limit	2
mammalian	2
microarray	2
microenvironment	2
molecular_crowding	2
motif_compositions	2
mutational_robustness	2
nadph_phagocyte_oxidase	2
nonlinear	2
notes	2
nucleosome	2
numerical_methods	2
ornsteinuhlenbeck	2
overexpression	2
pde	2
periodic	2
photosynthesis	2
physical_chemistry	2
piecewise_power-law	2
poisson_process	2
polymer	2
proportion	2
rare_events	2
rat	2
rate_saturation	2
rat_macrophage	2
regulon	2
rrna	2
secretion	2
spectral	2
statistical_model	2
statistical_sensitivity	2
strong_inference	2
survival_strategy	2
systems_biology	2
time_series	2
tumor	2
turbulence	2
type-1_ifn	2
ultrasensitivity	2
uncertainty_principle	2
writing	2
antibody	1
approximation	1
behavior	1
branching_process	1
causality	1
c_elegans	1
cell_turn_angle	1
cellular_automaton	1
clinical	1
codon_bias	1
coherent_coupling	1
component_relevance_ranking	1
convolution	1
cxcl11	1
cytochrome_oxidase	1
cytotoxic	1
dendritic_cell	1
deterministic	1
drift	1
eigenworm	1
elongation	1
endoplasmic_reticulum	1
equilibrium	1
ess	1
estimation	1
falsification	1
fasl	1
fdr	1
filter	1
focal_secretion	1
formyl_peptides	1
free_energy	1
genetic_variation	1
gfp	1
gradient	1
granular_dynamics	1
group_selection	1
half-life	1
hilbert_space	1
hiv	1
homeostatic_circuit	1
hormesis	1
il-10	1
il-12	1
il-2	1
induction	1
infliximab	1
inhertiance	1
iron_percent_acquisition	1
islets_of_langerhans	1
just-in-time	1
kinetic_insulation	1
kolmogorov_complexity	1
kolmogorov-smirnov	1
laplace_transform	1
lattice	1
leishmania_major	1
lhs	1
limit_cycle	1
lip	1
lipid_domain	1
localization	1
lymph_node	1
manhattan_project	1
mass-action	1
maximum_likelihood	1
memristor	1
met-leu-phe	1
metropolis-hastings	1
metropolis_rule	1
michaelis-menten	1
microfluidics	1
migration	1
mitochondria	1
mixed_feedback	1
molecular_dynamics	1
motility	1
mtsa-10	1
multimerization	1
mycobacteria	1
mycobacterium_marinum	1
mycobacterium_smegmatis	1
myd88	1
myosin	1
myxobacteria	1
neutral_evolution	1
nkt	1
non-human_primate	1
organization	1
overshoot	1
oxidative_stress	1
percolation	1
phase_coherence	1
phenotypic_mutation	1
philosophy	1
pleiotropy	1
potts_model	1
ppar-gamma	1
propensity	1
proteasome	1
protein_export	1
protein_function	1
proteome	1
quantitative_response	1
quantum_field_theory	1
rapamycin	1
reciprocal_adaptation	1
refseq	1
relativity	1
ribosome	1
rna	1
sampling	1
sde	1
series	1
siphon	1
sirna	1
smoluchowski_diffusion	1
speculation	1
stochastic_resonance	1
stoichiometry	1
substrate_competition	1
supercoiling	1
superoxide	1
superstatistics	1
symbolic_dynamics	1
szilard	1
tgfbeta	1
th1	1
time	1
transcriptional_attentuation	1
transendothelial_migration	1
triad	1
volume	1

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