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jjray's biochemistry [23 articles]

Recent papers added to jjray's library classified by the tag biochemistry. You can also see everyone's biochemistry.
  • An Introduction to Systems Biology: Design Principles of Biological Circuits (Chapman & Hall/Crc Mathematical and Computational Biology Series)
    (07 July 2006)
    by Uri Alon
    posted to systems_approach synthetic_biology robustness response_time mathematical_model feedback design_principles biochemistry by jjray on 2008-07-16 16:31:47 as ** along with 7 people and 2 groups azazello aalibes balajis balicea mattjb fishtank akastrin ComplexAdaptiveSystems DSTO-CAS
  • Chemical Biophysics: Quantitative Analysis of Cellular Systems (Cambridge Texts in Biomedical Engineering)
    (07 July 2008)
    by Daniel A Beard, Hong Qian
    posted to thermodynamics stochastic reaction-diffusion mathematical_model energy biophysics biochemistry by jjray on 2008-07-16 16:30:43 as **
  • Substrate competition as a source of ultrasensitivity in the inactivation of wee1.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1133-1145.
    by SY Kim, JE Ferrell
    posted to biochemistry mathematical_model signaling substrate_competition zero-order_ultrasensitivity by jjray on 2008-02-18 16:55:50 as ** along with 1 person and 1 group arne dIEMoSIRIS
  • Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system
    Proceedings of the National Academy of Sciences, Vol. 100, No. 2. (21 January 2003), pp. 691-696.
    by Eric Batchelor, Mark Goulian
    posted to bacteria biochemistry mathematical_model robustness two-component_system by jjray on 2008-02-13 23:17:21 as read
  • EnvZ controls the concentration of phosphorylated OmpR to mediate osmoregulation of the porin genes
    Journal of Molecular Biology, Vol. 222, No. 3. (5 December 1991), pp. 567-580.
    by Frank D Russo, Thomas J Silhavy
    posted to bacteria biochemistry two-component_system by jjray on 2008-02-13 23:16:37 as **
  • The essential tension: opposed reactions in bacterial two-component regulatory systems
    Trends in Microbiology, Vol. 1, No. 8. (November 1993), pp. 306-310.
    by Frank D Russo, Thomas J Silhavy
    posted to bacteria biochemistry two-component_system by jjray on 2008-02-13 23:16:10 as **
  • Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects.
    J Biol Chem, Vol. 259, No. 23. (10 December 1984), pp. 14441-14447.
    by A Goldbeter, DE Koshland
    posted to biochemistry mathematical_model sensitivity_analysis zero-order_ultrasensitivity by jjray on 2008-01-15 18:16:06 as **
  • An amplified sensitivity arising from covalent modification in biological systems.
    Proc Natl Acad Sci U S A, Vol. 78, No. 11. (November 1981), pp. 6840-6844.
    by A Goldbeter, DE Koshland
    posted to biochemistry mathematical_model sensitivity_analysis signaling by jjray on 2008-01-11 18:23:22 as read along with 4 people and 1 group rklancer monod jbchang lenov compneur
  • Computational methods for diffusion-influenced biochemical reactions.
    Bioinformatics (30 May 2007)
    by Maciej Dobrzynski, Jordi Vidal Rodríguez, Jaap A A Kaandorp, Joke G G Blom
    posted to biochemistry mathematical_model noise review simulation stochastic by jjray on 2007-06-04 16:47:09 as *** along with 3 people and 1 group jmccammon balabu dagmar McCammon
  • Stochastic fluctuations in metabolic pathways
    PNAS, Vol. 104, No. 22. (29 May 2007), pp. 9224-9229.
    by Erel Levine, Terence Hwa
    posted to biochemistry mathematical_model metabolism noise stochastic by jjray on 2007-05-30 19:20:03 as read along with 2 people dylanwalker balabu
  • New structural insights into the molecular deciphering of mycobacterial lipoglycan binding to C-type lectins: lipoarabinomannan glycoform characterization and quantification by capillary electrophoresis at the subnanomole level
    Journal of Molecular Biology, Vol. 299, No. 5. (23 June 2000), pp. 1353-1362.
    by Jerome Nigou, Alain Vercellone, Germain Puzo
    posted to biochemistry lam mycobacterium_tuberculosis quantitative_data by jjray on 2006-09-21 18:27:58 as read
  • NO suppresses while peroxynitrite sustains NF-[kappa]B: a paradigm to rationalize cytoprotective and cytotoxic actions attributed to NO
    Cardiovascular Research, Vol. 63, No. 1. (1 July 2004), pp. 31-40.
    by Yoshiyuki Hattori, Kikuo Kasai, Steven S Gross
    posted to biochemistry feedback immune_activation network_motifs nf-kappab nitric_oxide by jjray on 2006-09-20 20:52:59 as read
  • A cooperative oxygen-binding hemoglobin from Mycobacterium tuberculosis
    PNAS, Vol. 96, No. 20. (28 September 1999), pp. 11223-11228.
    by Manon Couture, Syun-Ru Yeh, Beatrice A Wittenberg, Jonathan B Wittenberg, Yannick Ouellet, Denis L Rousseau, Michel Guertin
    posted to biochemistry latency mycobacterium_tuberculosis nitric_oxide pathogen_killing rni by jjray on 2006-09-18 20:50:40 as read
  • Toxicity of nitrogen oxides and related oxidants on mycobacteria: M. tuberculosis is resistant to peroxynitrite anion.
    Tuber Lung Dis, Vol. 79, No. 4. (1999), pp. 191-198.
    by K Yu, C Mitchell, Y Xing, RS Magliozzo, BR Bloom, J Chan
    posted to biochemistry mycobacterium_tuberculosis nitric_oxide rni roi by jjray on 2005-10-31 21:31:33 as read
  • Kinetic studies of the production of nitric oxide (NO) and tumour necrosis factor-alpha (TNF-alpha) in macrophages stimulated with Burkholderia pseudomallei endotoxin.
    Clin Exp Immunol, Vol. 122, No. 3. (December 2000), pp. 324-329.
    by P Utaisincharoen, N Tangthawornchaikul, W Kespichayawattana, N Anuntagool, P Chaisuriya, S Sirisinha
    posted to biochemistry co-culture dose_response gene_regulation immune_activation lps murine_macrophage nitric_oxide quantitative_data response_time tnf by jjray on 2005-09-16 21:56:45 as read
  • Autocrine/paracrine IFN-alphabeta mediates the lipopolysaccharide-induced activation of transcription factor Stat1alpha in mouse macrophages: pivotal role of Stat1alpha in induction of the inducible nitric oxide synthase gene.
    J Immunol, Vol. 161, No. 9. (1 November 1998), pp. 4803-4810.
    by JJ Gao, MB Filla, MJ Fultz, SN Vogel, SW Russell, WJ Murphy
    posted to autocrine_paracrine biochemistry cytokine gene_regulation ifn-gamma immune_activation murine_macrophage network_motifs nitric_oxide stat1 transcription by jjray on 2005-09-16 21:19:31 as read
  • Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions.
    J Theor Biol, Vol. 25, No. 3. (December 1969), pp. 365-369.
    by MA Savageau
    posted to biochemical_systems_theory biochemistry mathematical_model metabolism network sensitivity_analysis systems_approach theory by jjray on 2005-08-31 20:40:25 as read
  • Michaelis-Menten mechanism reconsidered: implications of fractal kinetics.
    J Theor Biol, Vol. 176, No. 1. (7 September 1995), pp. 115-124.
    by MA Savageau
    posted to biochemical_systems_theory biochemistry fractal mathematical_model power_law quantitative_data rate_saturation theory by jjray on 2005-08-31 20:37:14 as read
  • Multiple functions of a feed-forward-loop gene circuit.
    J Mol Biol, Vol. 349, No. 3. (10 June 2005), pp. 501-514.
    by ME Wall, MJ Dunlop, WS Hlavacek
    posted to biochemistry feedforward gene_regulation mathematical_model mathematically_controlled_comparison network network_motifs systems_approach temporal_response by jjray on 2005-08-30 21:43:41 as read along with 1 person bayesian
  • A new measure of the robustness of biochemical networks.
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2698-2705.
    by BS Chen, YC Wang, WS Wu, WH Li
    posted to biochemical_systems_theory biochemistry fragility mathematical_model robustness sensitivity_analysis systems_approach theory by jjray on 2005-08-30 21:40:32 as read
  • Iron down-regulates macrophage anti-tumour activity by blocking nitric oxide production.
    Clin Exp Immunol, Vol. 137, No. 1. (July 2004), pp. 109-116.
    by L Harhaji, O Vuckovic, D Miljkovic, S Stosic-Grujicic, V Trajkovic
    posted to biochemistry immune_activation iron murine_macrophage nitric_oxide rat_macrophage by jjray on 2005-08-30 21:38:27 as read
  • Improved methods for the mathematically controlled comparison of biochemical systems.
    Theor Biol Med Model, Vol. 1, No. 1. (4 June 2004)
    by John H Schwacke, Eberhard O Voit
    posted to biochemical_systems_theory biochemistry mathematical_model mathematically_controlled_comparison network network_motifs sensitivity_analysis systems_approach theory by jjray on 2005-08-30 21:29:27 as read
  • Computation and analysis of time-dependent sensitivities in Generalized Mass Action systems.
    J Theor Biol, Vol. 236, No. 1. (7 September 2005), pp. 21-38.
    by JH Schwacke, EO Voit
    posted to biochemical_systems_theory biochemistry mathematical_model network sensitivity_analysis theory by jjray on 2005-08-30 21:27:58 as read
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