jjray's e_coli [114 articles] Export

Recent papers added to jjray's library classified by the tag e_coli. You can also see everyone's e_coli.

	Transcription, Translation, and the Evolution of Specialists and Generalists [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2661-2678. by Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean posted to translation transcription stress_response gene_expression evolution e_coli bacteria by jjray on 2009-11-10 16:14:56 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 3 people JeremyZucker dbikard rsaito
	Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS [My Copy] PLoS Genet, Vol. 5, No. 10. (2 October 2009), e1000671. by Daniel M. Stoebel, Karsten Hokamp, Michael S. Last, Charles J. Dorman posted to stress_response sigma_factor evolution e_coli bacteria by jjray on 2009-11-03 23:33:51 as
	Invariant Distribution of Promoter Activities in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (23 October 2009), e1000545. by Alon Zaslaver, Shai Kaplan, Anat Bren, et al.Adrian Jinich, Avi Mayo, Erez Dekel, Uri Alon, Shalev Itzkovitz posted to promoter gene_expression e_coli distribution bacteria by jjray on 2009-11-03 23:28:45 as along with 1 person dbikard
	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to population_genetics evolution e_coli bacteria adaptation by jjray on 2009-10-21 19:27:03 as along with 26 people and 4 groups kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm djkt treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks BergmanLab
	Optimal cytoplasmatic density and flux balance model under macromolecular crowding effects [My Copy] (11 Oct 2009) by Alexei Vazquez posted to optimization metabolism e_coli diffusion cytoplasm bacteria by jjray on 2009-10-13 16:45:07 as along with 1 person apocapoc
	Induction Kinetics of a Conditional pH Stress Response System in Escherichia coli [My Copy] Journal of Molecular Biology (21 August 2009) by Georg Fritz, Christiane Koller, Korinna Burdack, et al.Larissa Tetsch, Ina Haneburger, Kirsten Jung, Ulrich Gerland posted to stress_response quantitative_data mathematical_model kinetics gene_expression e_coli bacteria by jjray on 2009-10-01 15:34:58 as
	Global Analysis of Extracytoplasmic Stress Signaling in Escherichia coli [My Copy] PLoS Genet, Vol. 5, No. 9. (18 September 2009), e1000651. by Stéphanie Bury-Moné, Yanoura Nomane, Nancie Reymond, et al.Romain Barbet, Eric Jacquet, Sandrine Imbeaud, Annick Jacq, Philippe Bouloc posted to stress_response signaling e_coli bacteria by jjray on 2009-09-26 23:21:21 as
	Design Parameters to Control Synthetic Gene Expression in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 9. (14 September 2009), e7002. by Mark Welch, Sridhar Govindarajan, Jon E. Ness, et al.Alan Villalobos, Austin Gurney, Jeremy Minshull, Claes Gustafsson posted to synthetic_biology gene_expression e_coli bacteria by jjray on 2009-09-26 15:41:38 as along with 6 people and 1 group dbikard RasmusJensen pala0088 Vincent_Rouilly michaelbarton bmduggan Synthetic Biology
	Correlation between gene expression profiles and protein-protein interactions within and across genomes [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2730-2738. by Nitin Bhardwaj, Hui Lu posted to yeast protein_interactions gene_expression e_coli by jjray on 2009-09-10 19:44:28 as along with 2 people and 1 group jperkins lfriedl kdl
	Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli [My Copy] Genome Biology, Vol. 5, No. 11. (2004), R87. by Brian Peter, Javier Arsuaga, Adam Breier, Arkady Khodursky, Patrick Brown, Nicholas Cozzarelli posted to transcription supercoiling gene_expression e_coli bacteria by jjray on 2009-09-10 17:07:30 as along with 2 people comb supercoiling
	Recombination Speeds Adaptation by Reducing Competition between Beneficial Mutations in Populations of Escherichia coli [My Copy] PLoS Biol, Vol. 5, No. 9. (21 August 2007), e225. by Tim F. Cooper posted to recombination population_genetics evolution e_coli bacteria by jjray on 2009-08-31 18:42:53 as along with 1 person yuhc
	Autogenous and nonautogenous control of response in a genetic network [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12718-12723. by Francisco M. Camas, Jesús Blázquez, Juan F. Poyatos posted to sos response_time gene_regulation feedback e_coli bacteria by jjray on 2009-08-29 06:21:22 as along with 1 person aalibes
	On the accessibility of adaptive phenotypes of a bacterial metabolic network [My Copy] (14 Aug 2009) by Wilfred Ndifon, Joshua B. Plotkin, Jonathan Dushoff posted to simulation network metabolism evolutionary_dynamics evolution e_coli bacteria adaptation by jjray on 2009-08-17 17:45:02 as along with 1 person apocapoc
	Relation of Intracellular Signal Levels and Promoter Activities in the gal Regulon of Escherichia coli [My Copy] Journal of Molecular Biology (23 June 2009) by Sandeep Krishna, László Orosz, Kim Sneppen, Sankar Adhya, Szabolcs Semsey posted to bacteria e_coli gene_regulation mathematical_model metabolism operon signaling by jjray on 2009-08-10 17:36:51 as
	High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (15 July 2009), pp. 12412-12417. by Sujay Chattopadhyay, Scott J. Weissman, Vladimir N. Minin, Thomas A. Russo, Daniel E. Dykhuizen, Evgeni V. Sokurenko posted to bacteria e_coli evolution mutation by jjray on 2009-07-16 16:50:55 as along with 2 people jasontsai zwang
	Adaptive prediction of environmental changes by microorganisms [My Copy] Nature, Vol. 460, No. 7252. (17 June 2009), pp. 220-224. by Amir Mitchell, Gal H. Romano, Bella Groisman, et al.Avihu Yona, Erez Dekel, Martin Kupiec, Orna Dahan, Yitzhak Pilpel posted to yeast adaptation bacteria e_coli evolution by jjray on 2009-07-08 19:40:41 as along with 8 people and 1 group yyfwuhan kinestetika biomcgary sriesenfeld timotay izuleta djkt michaelbarton iSEEM
	Self-Organization of the Escherichia coli Chemotaxis Network Imaged with Super-Resolution Light Microscopy [My Copy] PLoS Biol, Vol. 7, No. 6. (23 June 2009), e1000137. by Derek Greenfield, Ann L. McEvoy, Hari Shroff, et al.Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt posted to bacteria chemotaxis e_coli protein_interactions signaling by jjray on 2009-07-01 17:10:58 as along with 4 people tomd66 schmidtm robfsouza dbikard
	Functional Characterization in Vitro of All Two-component Signal Transduction Systems from Escherichia coli [My Copy] J. Biol. Chem., Vol. 280, No. 2. (14 January 2005), pp. 1448-1456. by Kaneyoshi Yamamoto, Kiyo Hirao, Taku Oshima, Hirofumi Aiba, Ryutaro Utsumi, Akira Ishihama posted to bacteria crosstalk e_coli phobr phopq two-component_system by jjray on 2009-06-15 18:47:26 as
	Chaperonin overexpression promotes genetic variation and enzyme evolution. [My Copy] Nature, Vol. 459, No. 7247. (4 June 2009), pp. 668-673. by Nobuhiko Tokuriki, Dan S. Tawfik posted to bacteria e_coli evolution protein_folding stability by jjray on 2009-06-03 21:33:24 as along with 3 people yyfwuhan absterga zwang
	Mutual Information between Input and Output Trajectories of Biochemical Networks [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218101. by Filipe Tostevin, Pieter R. ten Wolde posted to bacteria biochemistry chemotaxis e_coli information network signaling by jjray on 2009-05-29 20:33:51 as
	Differential Affinity and Catalytic Activity of CheZ in <italic>E. coli</italic> Chemotaxis [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (8 May 2009), e1000378. by Siebe B. van Albada, Pieter R. ten Wolde edited by Christopher Rao posted to bacteria chemotaxis e_coli phosphorylation signaling two-component_system by jjray on 2009-05-29 16:44:25 as
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted to bacteria e_coli gene_network mathematical_model synthetic_biology by jjray on 2009-05-29 16:01:17 as along with 15 people dbikard pyjamashark abhishek_tiwari mjoach myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt dswan
	Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000115. by Károly Kovács, Laurence D. Hurst, Balázs Papp posted to bacteria chromosome_organization e_coli gene_order metabolism stochastic by jjray on 2009-05-27 17:52:56 as along with 6 people elifsu emptyhb trfield dipenps pinney kentsis
	A coordinated network of transporters with overlapping specificities provides a robust survival strategy [My Copy] Proceedings of the National Academy of Sciences (18 May 2009) by Nir Tal, Shimon Schuldiner posted to antibiotics bacteria crosstalk e_coli robustness by jjray on 2009-05-22 23:20:11 as along with 2 people viktor21614 trfield
	Probing the Roles of the Two Different Dimers Mediated by the Receiver Domain of the Response Regulator PhoB [My Copy] Journal of Molecular Biology (14 April 2009) by Timothy R. Mack, Rong Gao, Ann M. Stock posted to bacteria e_coli gene_regulation phobr phosphorylation protein_binding two-component_system by jjray on 2009-05-18 20:11:39 as
	Synthesis of orthogonal transcription-translation networks [My Copy] Proceedings of the National Academy of Sciences (14 May 2009) by Wenlin An, Jason W. Chin posted to bacteria e_coli feedforward network synthetic_biology translation by jjray on 2009-05-15 17:37:24 as
	Predictions from a stochastic polymer model for the MinDE dynamics in E.coli [My Copy] (13 May 2009) by Peter Borowski, Eric N. Cytrynbaum posted to bacteria biophysics e_coli oscillation polymer spatial stochastic by jjray on 2009-05-14 17:10:34 as
	Stochastic Analysis of the SOS Response in Escherichia coli [My Copy] PloS one, Vol. 4, No. 5. (8 May 2009), e5363. by Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham posted to stochastic sos network mixed_feedback mathematical_model gillespie_algorithm gene_regulation feedback e_coli bacteria by jjray on 2009-05-13 21:51:38 as
	Mutual information between in- and output trajectories of biochemical networks [My Copy] (4 Jan 2009) by Filipe Tostevin, Pieter posted to bacteria biochemistry e_coli information mutual_information network signaling by jjray on 2009-05-07 16:22:56 as along with 1 person akraemer
	Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters [My Copy] Nucl. Acids Res. (16 October 2007), gkm720. by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C. Mueller posted to bacteria dna e_coli energy gene_regulation promoter sigma_factor by jjray on 2009-04-28 19:05:32 as along with 3 people and 1 group operon dpollard maximilianh EisenLab
	Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of <I>Escherichia coli</I>? [My Copy] BioEssays, Vol. 17, No. 11. (1995), pp. 987-997. by Purnananda Guptasarma posted to bacteria copy_number e_coli stochastic transcription by jjray on 2009-04-27 23:17:26 as
	Coding-sequence determinants of gene expression in Escherichia coli. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to bacteria codon_bias e_coli evolution gene_expression mutation translation by jjray on 2009-04-10 17:39:19 as along with 32 people and 1 group balabu yyfwuhan dbikard kinestetika samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares rpatward lizbiogen jdbowes operon jasontsai absterga jbhiatt kshundyak zwang friendpine BergmanLab
	Phosphorylation of nitrogen regulator I (NRI) of Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 23. (December 1988), pp. 8919-8923. by V. Weiss, B. Magasanik posted to bacteria e_coli phosphorylation signaling two-component_system by jjray on 2009-03-18 20:26:17 as
	Metabolic switching in the sugar phosphotransferase system of Escherichia coli. [My Copy] Biophys J, Vol. 85, No. 2. (August 2003), pp. 744-754. by M. Thattai, B. I. Shraiman posted to bacteria bistability e_coli mathematical_model metabolism by jjray on 2009-03-03 20:51:47 as along with 1 person Norlins
	Multistability in the lactose utilization network of Escherichia coli [My Copy] Nature, Vol. 427, No. 6976. (19 February 2004), pp. 737-740. by Ertugrul M. Ozbudak, Mukund Thattai, Han N. Lim, Boris I. Shraiman, Alexander van Oudenaarden posted to bacteria bistability e_coli gene_regulation network by jjray on 2009-03-03 17:13:28 as along with 7 people ajitkumar22 rklancer monod Norlins ner25 madhadron jporternj
	Characterization of the Escherichia coli araFGH and araJ promoters [My Copy] Journal of Molecular Biology, Vol. 215, No. 4. (20 October 1990), pp. 497-510. by W. Hendrickson, C. Stoner, R. Schleif posted to bacteria e_coli gene_regulation by jjray on 2009-02-26 18:05:06 as
	In vivo induction kinetics of the arabinose promoters in Escherichia coli. [My Copy] Journal of bacteriology, Vol. 177, No. 12. (June 1995), pp. 3438-3442. by C. M. Johnson, R. F. Schleif posted to bacteria e_coli feedback gene_regulation kinetics by jjray on 2009-02-26 18:04:52 as
	From scratch to value: engineering Escherichia coli wild type cells to the production of l -phenylalanine and other fine chemicals derived from chorismate [My Copy] Applied Microbiology and Biotechnology, Vol. 75, No. 4. (1 June 2007), pp. 739-749. by Georg Sprenger posted to bacteria e_coli feedback metabolism by jjray on 2009-02-19 23:29:17 as
	Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by David Kentner, Victor Sourjik posted to bacteria chemotaxis e_coli protein_binding signaling by jjray on 2009-02-18 17:46:08 as along with 1 person brianb
	A kinetic model of oxygen regulation of cytochrome production in Escherichia coli. [My Copy] Journal of theoretical biology, Vol. 242, No. 3. (7 October 2006), pp. 547-563. by B. E. Peercy, S. J. Cox, S. Shalel-Levanon, K. Y. San, G. Bennett posted to bacteria e_coli feedback hysteresis mathematical_model two-component_system by jjray on 2009-02-12 21:59:47 as
	Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000344. by Marie Touchon, Claire Hoede, Olivier Tenaillon, et al.Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem E. Karoui, Eric Frapy, Louis Garry, Jean M. Ghigo, Anne M. Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie A. Petit, Christophe Pichon, Zoé Rouy, Claude S. Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. C. Rocha, Erick Denamur posted to bacteria e_coli evolution genetics genome phylogeny by jjray on 2009-02-03 17:34:53 as along with 3 people and 1 group calderonv katholt djkt iSEEM
	From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. [My Copy] Bioessays, Vol. 20, No. 5. (May 1998), pp. 433-440. by D. Thieffry, A. M. Huerta, E. Pérez-Rueda, J. Collado-Vides posted to bacteria e_coli feedback gene_regulation network transcriptional_regulation by jjray on 2009-01-26 20:46:03 as along with 2 people stk lmichan
	Amplification of the tryptophan operon gene in Escherichia coli chromosome to increase l-tryptophan biosynthesis [My Copy] Applied Microbiology and Biotechnology, Vol. 40, No. 2. (1 November 1993), pp. 301-305. by Err-Cheng Chan, Hsiu-Lan Tsai, Shih-Lin Chen, Due-Gang Mou posted to bacteria e_coli gene_regulation metabolism operon by jjray on 2009-01-20 22:15:30 as along with 1 person dbikard
	RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 8. (August 2007), pp. 1141-1154. by C. Yanofsky posted to bacillus_subtilis bacteria e_coli metabolism review by jjray on 2009-01-07 20:59:35 as along with 1 person stk
	Genetic regulatory mechanisms in the synthesis of proteins. [My Copy] J Mol Biol, Vol. 3 (June 1961), pp. 318-356. by F. JACOB, J. MONOD posted to bacteria e_coli feedback gene_regulation by jjray on 2009-01-06 18:15:57 as along with 2 people nikkiwithers tkmaia
	The regulation of bacterial transcription initiation. [My Copy] Nat Rev Microbiol, Vol. 2, No. 1. (January 2004), pp. 57-65. by D. F. Browning, S. J. Busby posted to bacteria e_coli gene_regulation mode-of-control promoter transcription by jjray on 2008-12-18 20:36:32 as along with 5 people and 1 group mirkocortese monod jstajic nickluscombe dquest EBI-regulation
	Invariance of the Nucleoside Triphosphate Pools of Escherichia coli with Growth Rate [My Copy] J. Biol. Chem., Vol. 275, No. 6. (11 February 2000), pp. 3931-3935. by Carsten Petersen, Lisbeth B. Moller posted to atp bacteria e_coli growth_rate by jjray on 2008-12-18 17:45:44 as along with 1 person westoll
	Bacterial DNA supercoiling and [ATP]/[ADP] ratio: changes associated with salt shock. [My Copy] Journal of bacteriology, Vol. 173, No. 12. (June 1991), pp. 3914-3917. by L. S. Hsieh, J. Rouviere-Yaniv, K. Drlica posted to atp bacteria e_coli by jjray on 2008-12-18 17:31:49 as
	Repression of Escherichia coli PhoP-PhoQ signaling by acetate reveals a regulatory role for acetyl coenzyme A. [My Copy] Journal of bacteriology, Vol. 185, No. 8. (April 2003), pp. 2563-2570. by J. A. Lesley, C. D. Waldburger posted to bacteria e_coli phopq signaling two-component_system by jjray on 2008-12-08 18:31:48 as along with 1 person Sjitprasutwit

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bacteria	259
mathematical_model	255
gene_regulation	251
stochastic	198
signaling	153
evolution	141
mycobacterium_tuberculosis	139
noise	131
network	129
feedback	127
two-component_system	127
e_coli	114
biophysics	100
review	99
gene_expression	73
t_cell	60
immune_activation	59
biochemistry	55
method	55
transcription	55
bacillus_subtilis	53
tnf	53
murine_macrophage	51
chemokine	50
physics	49
chemotaxis	48
theory	47
robustness	43
network_motifs	38
nitric_oxide	38
metabolism	37
quantitative_data	37
systems_approach	37
sporulation	36
thermodynamics	35
bistability	33
spo0	33
dynamical_system	32
simulation	32
ifn-gamma	30
phopq	30
phosphorylation	30
regulatory_t_cell	30
development	29
human_macrophage	29
information	29
promoter	29
kinetics	28
oscillation	28
granuloma	27
synthetic_biology	26
transcriptional_regulation	26
nf-kappab	25
spatial	25
eukaryote	22
macrophage	22
dynamics	21
gillespie_algorithm	21
salmonella	21
yeast	21
biochemical_systems_theory	20
complexity	20
sigma_factor	20
cytokine	19
growth_rate	19
iron	19
positive_feedback	19
statistical_mechanics	18
apoptosis	17
evolutionary_dynamics	17
gene_order	17
mrna	17
non-equilibrium	17
opinion	17
sensitivity_analysis	17
toll-like_receptor	17
history	16
host-pathogen_interaction	16
human_monocyte	16
inos	16
bara	15
chromosome_organization	15
diffusion	15
mathematically_controlled_comparison	15
phenotypic_heterogeneity	15
adaptation	14
feedforward	14
game_theory	14
chemical_reaction	13
computation	13
crosstalk	13
design_principles	13
dna_binding	13
gene_network	13
immune_cell_kinetics	13
quantum_mechanics	13
csra	12
response_time	12
stability	12
translation	12
ccl5	11
energy	11
genetics	11
macrophage_activation	11
sensitivity	11
transcriptional_burst	11
ccl2	10
distribution	10
ecology	10
langevin	10
mathematics	10
neutrophil	10
optimization	10
stress_response	10
textbook	10
3-dimensional_structure	9
atp	9
dna	9
lam	9
lps	9
modularity	9
mouse	9
mutation	9
population_genetics	9
recruitment	9
statistical_method	9
statistical_physics	9
brownian_motion	8
cooperativity	8
criticality	8
frequency	8
human	8
hysteresis	8
immunology	8
lung	8
mathematical_biology	8
monte_carlo	8
neuroscience	8
operon	8
parameter	8
quorum_sensing	8
recombination	8
statistics	8
temporal_response	8
chaos	7
delay	7
entropy	7
enzyme	7
fokker-planck	7
intracellular	7
phagocytosis	7
protein_interactions	7
stem_cell	7
agent_based	6
bifurcation	6
canalization	6
conformational_dynamics	6
data_fitting	6
detailed_balance	6
drosophila	6
economics	6
evolvability	6
graph_theory	6
jf	6
large_deviations	6
macrophage_deactivation	6
multiscale	6
mycobacterium_bovis	6
phagosome	6
phenotype	6
philosophy_of_science	6
population	6
power_law	6
protein_folding	6
socs1	6
synergistic_signals	6
timescale	6
transcriptional_reprogramming	6
algorithm	5
biology_as_engineering	5
ergodic	5
fluid_flow	5
geometric	5
inflammation	5
mechanism	5
necrosis	5
pattern_formation	5
prokaryote	5
ratchet	5
receptor	5
rni	5
signaling_cascade	5
sos	5
stat1	5
tor	5
antagonist	4
bursting	4
cell_polarization	4
chemical_physics	4
commentary	4
cxcl9	4
cxcr3	4
degradation	4
dose_response	4
dynamic_range	4
editorial	4
epistasis	4
fitness_landscape	4
fluctuation-dissipation	4
genome	4
irf-1	4
kinetic_proofreading	4
latency	4
markov_chain	4
mutual_information	4
network_inference	4
pathogen_killing	4
persister	4
phylogeny	4
protein_binding	4
rate	4
repressilator	4
shea-ackers	4
steady_state	4
synergistic	4
tau_leap	4
zero-order_ultrasensitivity	4
analysis	3
antibiotics	3
bayesian_inference	3
b_cell	3
book	3
ccr5	3
cell_cycle	3
cell_division	3
co-culture	3
competence	3
correlation	3
ctl	3
data	3
demand_theory	3
differential_equations	3
early_immunity	3
endothelium	3
extrinsic_noise	3
ferritin	3
flow_cytometry	3
foxp3	3
fractal	3
gibbs	3
hamiltonian	3
heat_shock	3
historical_contingency	3
lymphocyte	3
mode-of-control	3
mutational_entropy	3
neural_network	3
nucleus	3
phobr	3
physical_limit	3
potential	3
probability	3
random_walk	3
reaction-diffusion	3
receptor_binding	3
replicator_equation	3
roi	3
scale-free	3
shannon_entropy	3
siderophore	3
signal_specificity	3
single_cell	3
spin_glass	3
threshold_signal	3
timing	3
trade-off	3
tsc	3
adhesion_molecules	2
adiabatic_elimination	2
artificial_evolution	2
autocrine_paracrine	2
binding_constant	2
biological_uncertainty_principle	2
bliss_independence	2
boolean_network	2
bottleneck	2
brownian_dynamics	2
ccr2	2
cell_size	2
chemistry	2
chemokine_paradox	2
chromatin	2
convergent_evolution	2
cooperation	2
copy_number	2
cost-benefit	2
cytoplasm	2
database	2
deconvolution	2
dense_overlapping_regulon	2
dimerization	2
dual_feedback_motif	2
endothelial_cell	2
es_cell	2
flexibility	2
fluorescence	2
fragility	2
genetic_linkage	2
global_regulator	2
goldbeter-koshland	2
hierarchy	2
horizontal_gene_transfer	2
ider	2
intrinsic_protein_disorder	2
in_vitro	2
labile_iron_pool	2
macrodomain	2
macrophage_mtb_moi_upper_limit	2
mammalian	2
microarray	2
microenvironment	2
molecular_crowding	2
motif_compositions	2
mutational_robustness	2
nadph_phagocyte_oxidase	2
nonlinear	2
notes	2
nucleosome	2
numerical_methods	2
ornsteinuhlenbeck	2
overexpression	2
pde	2
periodic	2
photosynthesis	2
physical_chemistry	2
piecewise_power-law	2
poisson_process	2
polymer	2
proportion	2
rare_events	2
rat	2
rate_saturation	2
rat_macrophage	2
regulon	2
rrna	2
secretion	2
spectral	2
statistical_model	2
statistical_sensitivity	2
strong_inference	2
survival_strategy	2
systems_biology	2
time_series	2
tumor	2
turbulence	2
type-1_ifn	2
ultrasensitivity	2
uncertainty_principle	2
writing	2
antibody	1
approximation	1
behavior	1
branching_process	1
causality	1
c_elegans	1
cell_turn_angle	1
cellular_automaton	1
clinical	1
codon_bias	1
coherent_coupling	1
component_relevance_ranking	1
convolution	1
cxcl11	1
cytochrome_oxidase	1
cytotoxic	1
dendritic_cell	1
deterministic	1
dna_replication	1
drift	1
eigenworm	1
elongation	1
endoplasmic_reticulum	1
equilibrium	1
ess	1
estimation	1
falsification	1
fasl	1
fdr	1
filter	1
focal_secretion	1
formyl_peptides	1
free_energy	1
genetic_variation	1
gfp	1
gradient	1
granular_dynamics	1
group_selection	1
half-life	1
hilbert_space	1
hiv	1
homeostatic_circuit	1
hormesis	1
il-10	1
il-12	1
il-2	1
induction	1
infliximab	1
inhertiance	1
iron_percent_acquisition	1
islets_of_langerhans	1
just-in-time	1
kinetic_insulation	1
kolmogorov_complexity	1
kolmogorov-smirnov	1
laplace_transform	1
lattice	1
leishmania_major	1
lhs	1
limit_cycle	1
lip	1
lipid_domain	1
localization	1
lymph_node	1
manhattan_project	1
mass-action	1
maximum_likelihood	1
memristor	1
met-leu-phe	1
metropolis-hastings	1
metropolis_rule	1
michaelis-menten	1
microfluidics	1
migration	1
mitochondria	1
mixed_feedback	1
molecular_dynamics	1
motility	1
mtsa-10	1
multimerization	1
mycobacteria	1
mycobacterium_marinum	1
mycobacterium_smegmatis	1
myd88	1
myosin	1
myxobacteria	1
neutral_evolution	1
nkt	1
non-human_primate	1
organization	1
overshoot	1
oxidative_stress	1
percolation	1
phase_coherence	1
phenotypic_mutation	1
philosophy	1
pleiotropy	1
potts_model	1
ppar-gamma	1
propensity	1
proteasome	1
protein_export	1
protein_function	1
proteome	1
quantitative_response	1
quantum_field_theory	1
rapamycin	1
reciprocal_adaptation	1
refseq	1
relativity	1
ribosome	1
rna	1
sampling	1
sde	1
series	1
siphon	1
sirna	1
smoluchowski_diffusion	1
speculation	1
stochastic_resonance	1
stoichiometry	1
substrate_competition	1
supercoiling	1
superoxide	1
superstatistics	1
symbolic_dynamics	1
szilard	1
tgfbeta	1
th1	1
time	1
transcriptional_attentuation	1
transendothelial_migration	1
triad	1
volume	1

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