CiteULike: jjray's gene_network [14 articles]

Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda

Journal of Molecular Biology, Vol. 394, No. 4. (11 December 2009), pp. 681-693.

by M. Avlund, Ian B. Dodd, K. Sneppen, S. Krishna

posted to phage gene_network feedback bistability by jjray on 2009-11-23 17:32:41 as

Optimizing information flow in small genetic networks

Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 3. (2009), 031920.

by Gašper Tkačik, Aleksandra M. Walczak, William Bialek

posted to optimization noise information gene_network gene_expression by jjray on 2009-09-30 22:00:57 as

Synthetic Gene Networks That Count

Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202.

by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins

posted to bacteria e_coli gene_network mathematical_model synthetic_biology by jjray on 2009-05-29 16:01:17 as

along with 15 people dbikard pyjamashark abhishek_tiwari mjoach myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt dswan

Optimizing genetic circuits by global sensitivity analysis.

Biophys J, Vol. 87, No. 4. (October 2004), pp. 2195-2202.

by X. J. Feng, S. Hooshangi, D. Chen, G. Li, R. Weiss, H. Rabitz

posted to gene_network optimization sensitivity_analysis by jjray on 2009-04-30 20:37:44 as

along with 3 people ClaireFB rklancer dbikard

Summing up the noise in gene networks.

Nature, Vol. 427, No. 6973. (29 January 2004), pp. 415-418.

by J. Paulsson

posted to feedback fluctuation-dissipation gene_network gene_regulation mathematical_model network noise review stochastic by jjray on 2009-04-08 20:36:09 as read

along with 10 people ddcttrl pkm bayesian balabu jiyu mhucka timflutre margaritis marcio dylanwalker

Critical behavior of a model for catalyzed autoamplification

The Journal of Chemical Physics, Vol. 130, No. 13. (2009), 134906.

by Martin Tchernookov, Aryeh Warmflash, Aaron R. Dinner

posted to biophysics criticality dynamical_system feedback gene_network mathematical_model network by jjray on 2009-04-07 22:55:03 as

Optimizing information flow in small genetic networks. I

(26 Mar 2009)

by Gasper Tkacik, Aleksandra M. Walczak, William Bialek

posted to gene_network information mathematical_model optimization by jjray on 2009-03-27 22:20:44 as

A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression

Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.

by Joel Smith, Christina Theodoris, Eric H. Davidson

posted to development feedback gene_network gene_regulation by jjray on 2009-01-14 18:53:41 as

along with 8 people and 2 groups leemond31 joseph_x_zhou cwbrown lshaw shigepong zwang heliopais hpaces bioNetwork_sysBio EisenLab

Sexual reproduction selects for robustness and negative epistasis in artificial gene networks

Nature, Vol. 440, No. 7080. (2006), pp. 87-90.

by Ricardo B. R. Azevedo, Rolf Lohaus, Suraj Srinivasan, Kristen K. Dang, Christina L. Burch

posted to evolution gene_network robustness by jjray on 2009-01-08 20:17:27 as read

along with 4 people and 2 groups adamnellis eldan cmm mjoach GEB FAB-lab

Extinction and resurrection in gene networks

Proceedings of the National Academy of Sciences (25 November 2008)

by Daniel Schultz, Aleksandra M. Walczak, José N. Onuchic, Peter G. Wolynes

posted to biophysics dynamical_system gene_network mathematical_model stochastic by jjray on 2008-11-26 17:39:15 as

along with 3 people akraemer kshundyak stk

Noise in genetic and neural networks.

Chaos, Vol. 16, No. 2. (June 2006)

by P. S. Swain, A. Longtin

posted to gene_network mathematical_model neural_network noise by jjray on 2008-07-01 18:09:49 as

along with 3 people and 2 groups bayesian cudmore suizan APprecision 8_01

Rate constants rather than biochemical mechanism determine behaviour of genetic clocks

Journal of The Royal Society Interface, Vol. 5, No. Suppl 1. (6 August 2008), pp. S9-S15.

by Emery Conrad, Avraham E. Mayo, Alexander J. Ninfa, Daniel B. Forger

posted to feedback gene_network gene_regulation kinetics mathematical_model oscillation parameter by jjray on 2008-06-23 20:00:00 as

along with 1 person abhishek_tiwari

Nuclear Receptor-Enhanced Transcription Requires Motor- and LSD1-Dependent Gene Networking in Interchromatin Granules

Cell, Vol. 132, No. 6. (21 March 2008), pp. 996-1010.

by Esperanza Nunez, Young-Soo Kwon, Kasey R. Hutt, et al.Qidong Hu, Maria D. Cardamone, Kenneth A. Ohgi, Ivan Garcia-Bassets, David W. Rose, Christopher K. Glass, Michael G. Rosenfeld, Xiang-Dong Fu

posted to chromatin gene_expression gene_network nucleus transcription transcriptional_reprogramming by jjray on 2008-04-23 23:35:16 as

along with 1 person dquest

Global regulatory logic for specification of an embryonic cell lineage

Proceedings of the National Academy of Sciences (14 April 2008), 0711220105.

by Paola Oliveri, Qiang Tu, Eric H. Davidson

posted to gene_network gene_regulation stem_cell by jjray on 2008-04-15 18:25:49 as

along with 2 people Minty brant

	Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda [My Copy] Journal of Molecular Biology, Vol. 394, No. 4. (11 December 2009), pp. 681-693. by M. Avlund, Ian B. Dodd, K. Sneppen, S. Krishna posted to phage gene_network feedback bistability by jjray on 2009-11-23 17:32:41 as
	Optimizing information flow in small genetic networks [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 3. (2009), 031920. by Gašper Tkačik, Aleksandra M. Walczak, William Bialek posted to optimization noise information gene_network gene_expression by jjray on 2009-09-30 22:00:57 as
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted to bacteria e_coli gene_network mathematical_model synthetic_biology by jjray on 2009-05-29 16:01:17 as along with 15 people dbikard pyjamashark abhishek_tiwari mjoach myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt dswan
	Optimizing genetic circuits by global sensitivity analysis. [My Copy] Biophys J, Vol. 87, No. 4. (October 2004), pp. 2195-2202. by X. J. Feng, S. Hooshangi, D. Chen, G. Li, R. Weiss, H. Rabitz posted to gene_network optimization sensitivity_analysis by jjray on 2009-04-30 20:37:44 as along with 3 people ClaireFB rklancer dbikard
	Summing up the noise in gene networks. [My Copy] Nature, Vol. 427, No. 6973. (29 January 2004), pp. 415-418. by J. Paulsson posted to feedback fluctuation-dissipation gene_network gene_regulation mathematical_model network noise review stochastic by jjray on 2009-04-08 20:36:09 as along with 10 people ddcttrl pkm bayesian balabu jiyu mhucka timflutre margaritis marcio dylanwalker
	Critical behavior of a model for catalyzed autoamplification [My Copy] The Journal of Chemical Physics, Vol. 130, No. 13. (2009), 134906. by Martin Tchernookov, Aryeh Warmflash, Aaron R. Dinner posted to biophysics criticality dynamical_system feedback gene_network mathematical_model network by jjray on 2009-04-07 22:55:03 as
	Optimizing information flow in small genetic networks. I [My Copy] (26 Mar 2009) by Gasper Tkacik, Aleksandra M. Walczak, William Bialek posted to gene_network information mathematical_model optimization by jjray on 2009-03-27 22:20:44 as
	A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression [My Copy] Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797. by Joel Smith, Christina Theodoris, Eric H. Davidson posted to development feedback gene_network gene_regulation by jjray on 2009-01-14 18:53:41 as along with 8 people and 2 groups leemond31 joseph_x_zhou cwbrown lshaw shigepong zwang heliopais hpaces bioNetwork_sysBio EisenLab
	Sexual reproduction selects for robustness and negative epistasis in artificial gene networks [My Copy] Nature, Vol. 440, No. 7080. (2006), pp. 87-90. by Ricardo B. R. Azevedo, Rolf Lohaus, Suraj Srinivasan, Kristen K. Dang, Christina L. Burch posted to evolution gene_network robustness by jjray on 2009-01-08 20:17:27 as along with 4 people and 2 groups adamnellis eldan cmm mjoach GEB FAB-lab
	Extinction and resurrection in gene networks [My Copy] Proceedings of the National Academy of Sciences (25 November 2008) by Daniel Schultz, Aleksandra M. Walczak, José N. Onuchic, Peter G. Wolynes posted to biophysics dynamical_system gene_network mathematical_model stochastic by jjray on 2008-11-26 17:39:15 as along with 3 people akraemer kshundyak stk
	Noise in genetic and neural networks. [My Copy] Chaos, Vol. 16, No. 2. (June 2006) by P. S. Swain, A. Longtin posted to gene_network mathematical_model neural_network noise by jjray on 2008-07-01 18:09:49 as along with 3 people and 2 groups bayesian cudmore suizan APprecision 8_01
	Rate constants rather than biochemical mechanism determine behaviour of genetic clocks [My Copy] Journal of The Royal Society Interface, Vol. 5, No. Suppl 1. (6 August 2008), pp. S9-S15. by Emery Conrad, Avraham E. Mayo, Alexander J. Ninfa, Daniel B. Forger posted to feedback gene_network gene_regulation kinetics mathematical_model oscillation parameter by jjray on 2008-06-23 20:00:00 as along with 1 person abhishek_tiwari
	Nuclear Receptor-Enhanced Transcription Requires Motor- and LSD1-Dependent Gene Networking in Interchromatin Granules [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 996-1010. by Esperanza Nunez, Young-Soo Kwon, Kasey R. Hutt, et al.Qidong Hu, Maria D. Cardamone, Kenneth A. Ohgi, Ivan Garcia-Bassets, David W. Rose, Christopher K. Glass, Michael G. Rosenfeld, Xiang-Dong Fu posted to chromatin gene_expression gene_network nucleus transcription transcriptional_reprogramming by jjray on 2008-04-23 23:35:16 as along with 1 person dquest
	Global regulatory logic for specification of an embryonic cell lineage [My Copy] Proceedings of the National Academy of Sciences (14 April 2008), 0711220105. by Paola Oliveri, Qiang Tu, Eric H. Davidson posted to gene_network gene_regulation stem_cell by jjray on 2008-04-15 18:25:49 as along with 2 people Minty brant

jjray's gene_network [14 articles] Export

jjray's tags

bacteria	295
gene_regulation	258
mathematical_model	257
stochastic	198
signaling	157
evolution	145
mycobacterium_tuberculosis	139
e_coli	134
noise	134
two-component_system	134
network	133
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review	104
biophysics	102
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