jjray's thermodynamics [36 articles] Export

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	Statistical mechanical theory for nonequilibrium systems. X. Nonequilibrium phase transitions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 18. (2009), 184509. by Phil Attard posted to thermodynamics theory statistical_mechanics physics phase_transition non-equilibrium entropy by jjray on 2009-11-14 16:54:57 as along with 1 person paulschlesinger
	Toward a quantitative theory of intrinsically disordered proteins and their function [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 47. (24 November 2009), pp. 19819-19823. by Jintao Liu, James R. Faeder, Carlos J. Camacho posted to thermodynamics protein_function intrinsic_protein_disorder biophysics by jjray on 2009-11-11 15:39:55 as along with 4 people TRHvidsten biehl dfdong samubernard
	Thermodynamic Limit of a Nonequilibrium Steady State: Maxwell-Type Construction for a Bistable Biochemical System [My Copy] Physical Review Letters, Vol. 103, No. 14. (2009), 148103. by Hao Ge, Hong Qian posted to thermodynamics steady_state non-equilibrium bistability biophysics biochemistry by jjray on 2009-10-05 19:45:28 as along with 1 person bertelsen
	Statistical Thermodynamics of Nonequilibrium Processes [My Copy] (21 July 1987) by Joel Keizer posted to thermodynamics textbook statistical_physics physics non-equilibrium noise chemical_physics by jjray on 2009-09-09 21:31:40 as
	Asymptotics of work distributions in nonequilibrium systems [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021120. by A. Engel posted to thermodynamics physics non-equilibrium large_deviations by jjray on 2009-08-31 21:58:43 as
	Time-dependent Nonequilibrium Thermodynamics: A Master-equation Approach [My Copy] (15 Apr 2009) by Hao Ge posted to thermodynamics stochastic non-equilibrium biophysics by jjray on 2009-08-31 18:04:02 as along with 2 people joshBerryman scratchmandoo
	Thermodynamic basis for the optimization of binding-induced biomolecular switches and structure-switching biosensors [My Copy] Proceedings of the National Academy of Sciences (5 August 2009) by Alexis Vallée-Bélisle, Francesco Ricci, Kevin W. Plaxco posted to biophysics conformational_dynamics optimization signaling thermodynamics by jjray on 2009-08-10 20:10:20 as along with 1 person kevinchannon
	The combination of transformed and constrained Gibbs energies [My Copy] Mathematical Biosciences, Vol. 220, No. 2. (08 August 2009), pp. 81-88. by Peter B. A. Blomberg, Pertti S. Koukkari posted to biophysics energy gibbs thermodynamics by jjray on 2009-07-24 16:25:39 as
	Transcriptional regulation by the numbers: applications [My Copy] Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 125-135. by L. Bintu, N. Buchler, H. Garcia, et al.U. Gerland, T. Hwa, J. Kondev, T. Kuhlman, R. Phillips posted to gene_regulation mathematical_model promoter review shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 17:02:31 as along with 6 people and 1 group siebert imouthesmp dpollard madhadron dquest discreteonyxorb EisenLab
	Transcriptional regulation by the numbers: models [My Copy] Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 116-124. by L. Bintu, N. Buchler, H. Garcia, et al.U. Gerland, T. Hwa, J. Kondev, R. Phillips posted to gene_regulation mathematical_model promoter review shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:53:46 as along with 5 people siebert imouthesmp madhadron dquest discreteonyxorb
	Quantitative model for gene regulation by lambda phage repressor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 4. (February 1982), pp. 1129-1133. by G. K. Ackers, A. D. Johnson, M. A. Shea posted to gene_regulation mathematical_model promoter shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:52:13 as along with 1 person emptyhb
	Fundamental Dynamic Units: Feedforward Networks and Adjustable Gates [My Copy] (12 Jul 2009) by Herbert Sauro, Song Yang posted to feedforward gene_regulation mathematical_model promoter shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:49:11 as
	Roots of diversity relations [My Copy] (1 Jun 2009) by Peter Wurtz, Arto Annila posted to ecology thermodynamics by jjray on 2009-06-02 20:31:42 as
	Nonequilibrium thermodynamics in field theory: Transport coefficients [My Copy] Annals of Physics, Vol. 154, No. 1. (15 April 1984), pp. 229-252. by A. Hosoya, M. Sakagami, M. Takao posted to correlation non-equilibrium physics thermodynamics by jjray on 2009-05-27 20:49:45 as along with 1 person NitinCR
	Thermodynamic constraints on neural dimensions, firing rates, brain temperature and size [My Copy] (22 May 2009) by Jan Karbowski posted to evolution mathematical_model neuroscience thermodynamics by jjray on 2009-05-25 20:17:32 as along with 1 person Scis0000002
	Thermodynamics of feedback controlled systems [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 4. (2009), 041118. by F. J. Cao, M. Feito posted to entropy feedback physics thermodynamics by jjray on 2009-04-30 23:20:27 as along with 1 person jeevanjyoti
	Nonergodic activated kinetics in polar media [My Copy] The Journal of Chemical Physics, Vol. 130, No. 16. (2009), 164522. by Dmitry V. Matyushov posted to biophysics chemistry ergodic kinetics thermodynamics by jjray on 2009-04-30 19:55:53 as along with 1 person dlimmer
	Non-equilibrium thermodynamics of gene expression and transcriptional regulation [My Copy] (3 Apr 2009) by Enrique Hernandez-Lemus posted to biophysics gene_expression gene_regulation non-equilibrium thermodynamics by jjray on 2009-04-13 18:31:01 as
	Relaxation phenomena at criticality [My Copy] (7 Dec 2007) by Andrea Gambassi posted to criticality dynamics non-equilibrium physics thermodynamics by jjray on 2008-08-20 19:11:15 as along with 2 people misha pak
	Lectures on Probability, Entropy, and Statistical Physics [My Copy] (31 Jul 2008) by Ariel Caticha posted to induction information probability statistical_physics thermodynamics by jjray on 2008-08-18 15:57:15 as along with 12 people egcavalcanti janpaniev makni hmk pdlug gniebler travieso petr cager ansobol Borelli sbarthelme
	Verschraenkung versus Stosszahlansatz: Disappearance of the Thermodynamic Arrow in a High-Correlation Environment [My Copy] (19 Aug 2007) by Hossein M. Partovi posted to physics thermodynamics by jjray on 2008-08-18 15:55:16 as along with 1 person pak
	Are DNA Transcription Factor Proteins Maxwellian Demons? [My Copy] Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1151-1156. by Longhua Hu, Alexander Y. Grosberg, Robijn Bruinsma posted to biophysics mathematical_model thermodynamics transcriptional_regulation by jjray on 2008-07-21 23:02:47 as
	Thermodynamics of natural selection III: Landauer's principle in computation and chemistry [My Copy] Journal of Theoretical Biology, Vol. 252, No. 2. (21 May 2008), pp. 213-220. by Eric Smith posted to energy evolution information theory thermodynamics by jjray on 2008-07-18 21:49:13 as
	Thermodynamics of natural selection II: Chemical Carnot cycles [My Copy] Journal of Theoretical Biology, Vol. 252, No. 2. (21 May 2008), pp. 198-212. by Eric Smith posted to energy evolution information theory thermodynamics by jjray on 2008-07-18 21:49:09 as
	Thermodynamics of natural selection I: Energy flow and the limits on organization [My Copy] Journal of Theoretical Biology, Vol. 252, No. 2. (21 May 2008), pp. 185-197. by Eric Smith posted to energy evolution information theory thermodynamics by jjray on 2008-07-18 21:48:45 as
	Chemical Biophysics: Quantitative Analysis of Cellular Systems (Cambridge Texts in Biomedical Engineering) [My Copy] (07 July 2008) by Daniel A. Beard, Hong Qian posted to biochemistry biophysics energy mathematical_model reaction-diffusion stochastic thermodynamics by jjray on 2008-07-16 16:30:43 as
	Thermal fluctuations biased for directional motion in molecular motors [My Copy] Biosystems In Selected Papers presented at the International Conference "Collective Dynamics: Topics on Competition and Cooperation in the Biosciences - BIOCOMP2007, Vol. 93, No. 1-2. ( 2008), pp. 34-38. by Yoshiharu Ishii, Yuichi Taniguchi, Mitsuhiro Iwaki, Toshio Yanagida posted to brownian_motion kinetics ratchet signaling thermodynamics by jjray on 2008-07-16 16:25:24 as
	Geometric Foundation of Thermo-Statistics, Phase Transitions, Second Law of Thermodynamics, but without Thermodynamic Limit [My Copy] (15 Jan 2002) by D. H. E. Gross posted to fractal geometric statistical_physics thermodynamics by jjray on 2008-07-11 17:29:18 as along with 1 person ansobol
	Nonequilibrium generation of information in copolymerization processes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (7 July 2008) by David Andrieux, Pierre Gaspard posted to dna non-equilibrium polymer statistical_mechanics thermodynamics by jjray on 2008-07-10 21:13:23 as
	Shannon Meets Carnot: Mutual Information Via Thermodynamics [My Copy] (19 Jun 2008) by Ori Shental, Ido Kanter posted to information thermodynamics by jjray on 2008-06-24 15:23:32 as along with 3 people and 1 group brothers A_Olympia ansobol logics of knowledge
	On the specificity of DNA-protein interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 83, No. 6. (March 1986), pp. 1608-1612. by P. H. von Hippel, O. G. Berg posted to dna_binding gene_regulation thermodynamics by jjray on 2008-04-01 20:34:15 as along with 3 people and 2 groups cisevol lambda stsaft TranscriptionalRegulationWithThermodynamicModels cis-regulatory-evolution
	The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation. [My Copy] J Mol Biol, Vol. 181, No. 2. (20 January 1985), pp. 211-230. by M. A. Shea, G. K. Ackers posted to biophysics gene_regulation statistical_mechanics thermodynamics by jjray on 2008-03-31 18:42:35 as along with 1 person lambda
	On the Relationship between Genomic Regulatory Element Organization and Gene Regulatory Dynamics [My Copy] Journal of Theoretical Biology, Vol. 195, No. 2. (21 November 1998), pp. 167-186. by Denise M. Wolf, Frank H. Eeckman posted to gene_regulation mathematical_model statistical_mechanics thermodynamics by jjray on 2008-03-31 18:33:46 as
	Failure of the work-Hamiltonian connection for free-energy calculations. [My Copy] Phys Rev Lett, Vol. 100, No. 2. (18 January 2008) by J. M. Vilar, J. M. Rubi posted to free_energy hamiltonian physics statistical_mechanics thermodynamics by jjray on 2008-03-14 17:31:10 as
	Ab initio thermodynamic modeling of distal multisite transcription regulation. [My Copy] Nucleic Acids Res, Vol. 36, No. 3. (February 2008), pp. 726-731. by L. Saiz, J. M. Vilar posted to bacteria biophysics mathematical_model thermodynamics transcription transcriptional_regulation by jjray on 2008-03-14 17:29:29 as along with 1 person maximilianh
	Towards a physics of evolution: Existence of gales of creative deconstruction in evolving technological networks [My Copy] (8 Mar 2007) by Rudolf Hanel, Stuart A. Kauffman, Stefan Thurner posted to evolution mathematical_model thermodynamics by jjray on 2007-03-19 17:53:45 as along with 1 person madhadron

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bacteria	292
mathematical_model	257
gene_regulation	256
stochastic	198
signaling	157
evolution	145
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e_coli	134
two-component_system	134
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volume	1

jjray's thermodynamics [36 articles] Export

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