jjray's transcription [56 articles] Export

Recent papers added to jjray's library classified by the tag transcription. You can also see everyone's transcription.

	Kinetics and regulation of transcription of bacteriophage Mu. [My Copy] Virology, Vol. 174, No. 1. (January 1990), pp. 192-203. by C. F. Marrs, M. M. Howe posted to transcription phage kinetics gene_regulation gene_expression bacteria by jjray on 2009-11-23 20:42:25 as
	Transcription, Translation, and the Evolution of Specialists and Generalists [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2661-2678. by Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean posted to translation transcription stress_response gene_expression evolution e_coli bacteria by jjray on 2009-11-10 16:14:56 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 5 people karthikraman venancio JeremyZucker dbikard rsaito
	Cotranscriptionality: The Transcription Elongation Complex as a Nexus for Nuclear Transactions [My Copy] Vol. 36, No. 2. (23 October 2009), pp. 178-191. by Roberto Perales, David Bentley posted to transcription review nucleus gene_expression eukaryote by jjray on 2009-10-22 21:50:12 as
	Spatiotemporal patterns and transcription kinetics of induced RNA in single bacterial cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16399-16404. by Maria Valencia-Burton, Ankita Shah, Jason Sutin, et al.Azra Borogovac, Ron M. McCullough, Charles R. Cantor, Amit Meller, Natalia E. Broude posted to transcription spatial mrna kinetics gene_expression bacteria by jjray on 2009-09-27 16:59:03 as along with 1 person OliverHarriman
	Transcription Dynamics [My Copy] Vol. 35, No. 6. (24 September 2009), pp. 741-753. by Gordon L. Hager, James G. McNally, Tom Misteli posted to transcription review gene_regulation dynamics by jjray on 2009-09-25 15:56:01 as
	The mean frequency of transcriptional bursting and its variation in single cells [My Copy] Journal of Mathematical Biology, Vol. 60, No. 1. (1 January 2010), pp. 27-58. by Moxun Tang posted to transcriptional_burst transcription theory stochastic noise mathematical_model frequency by jjray on 2009-09-25 15:53:16 as
	Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli [My Copy] Genome Biology, Vol. 5, No. 11. (2004), R87. by Brian Peter, Javier Arsuaga, Adam Breier, Arkady Khodursky, Patrick Brown, Nicholas Cozzarelli posted to transcription supercoiling gene_expression e_coli bacteria by jjray on 2009-09-10 17:07:30 as along with 2 people comb supercoiling
	Designing sequential transcription logic: a simple genetic circuit for conditional memory. [My Copy] Systems and synthetic biology, Vol. 1, No. 2. (21 April 2007), pp. 89-98. by Georg Fritz, Nicolas E. Buchler, Terence Hwa, Ulrich Gerland posted to transcription synthetic_biology network gene_regulation bacteria by jjray on 2009-08-26 18:59:08 as along with 1 group Synthetic Biology
	Unstable tandem repeats in promoters confer transcriptional evolvability. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5931. (29 May 2009), pp. 1213-1216. by Marcelo D. Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J. Verstrepen posted to evolution evolvability gene_regulation promoter stability transcription by jjray on 2009-05-29 15:59:12 as along with 14 people and 1 group xianjun absterga orzenil gjuggler bpcusack pkonings cisevol fenghezi cambray APRegier antonkratz JustinCrocker scjparker leliavski cis-regulatory-evolution
	Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of <I>Escherichia coli</I>? [My Copy] BioEssays, Vol. 17, No. 11. (1995), pp. 987-997. by Purnananda Guptasarma posted to bacteria copy_number e_coli stochastic transcription by jjray on 2009-04-27 23:17:26 as
	Transcription factor function and promoter architecture govern the evolution of bacterial regulons [My Copy] Proceedings of the National Academy of Sciences (27 February 2009) by Christian J. Perez, Eduardo A. Groisman posted to bacteria evolution gene_regulation phopq regulon transcription two-component_system by jjray on 2009-03-02 15:42:22 as along with 5 people Sjitprasutwit trfield mstumpf djkt provero
	Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. [My Copy] PLoS biology, Vol. 7, No. 2. (24 February 2009), e44. by Alasdair J. Gordon, Jennifer A. Halliday, Matthew D. Blankschien, Philip A. Burns, Fumio Yatagai, Christophe Herman posted to bistability feedback gene_regulation transcription by jjray on 2009-02-24 19:57:43 as along with 8 people and 1 group Winzer ocs katiejclowers biomcgary margaritis emptyhb bpcusack VGreiff Morgan Lab-KSU
	Elongation dynamics shape bursty transcription and translation [My Copy] Proceedings of the National Academy of Sciences (5 February 2009) by Maciej Dobrzyński, Frank J. Bruggeman posted to biophysics bursting mathematical_model noise stochastic transcription transcriptional_burst translation by jjray on 2009-02-06 17:04:22 as along with 2 people ocs akraemer
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted to eukaryote gene_regulation promoter transcription by jjray on 2008-12-19 17:13:55 as along with 16 people guhjy gdb fenghezi tonamswish emptyhb caseybrown siebert sebastien_vigneau inesdesantiago djkt strands Glires lp2 sandersl diaz0058 jbhiatt
	The regulation of bacterial transcription initiation. [My Copy] Nat Rev Microbiol, Vol. 2, No. 1. (January 2004), pp. 57-65. by D. F. Browning, S. J. Busby posted to bacteria e_coli gene_regulation mode-of-control promoter transcription by jjray on 2008-12-18 20:36:32 as along with 5 people and 1 group mirkocortese monod jstajic nickluscombe dquest EBI-regulation
	Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination [My Copy] Proceedings of the National Academy of Sciences (18 November 2008) by Stefan Klumpp, Terence Hwa posted to mathematical_model rrna stochastic transcription by jjray on 2008-11-19 18:24:51 as along with 2 people stk kshundyak
	Dynamic Organization of Gene Loci and Transcription Compartments in the Cell Nucleus [My Copy] Biophys. J., Vol. 95, No. 11. (1 December 2008), pp. 5003-5004. by James A. Spudich posted to gene_regulation nucleus spatial transcription by jjray on 2008-11-18 22:16:56 as
	Dynamical Analysis on Gene Activity in the Presence of Repressors and an Interfering Promoter [My Copy] Biophys. J., Vol. 95, No. 9. (1 November 2008), pp. 4228-4240. by Hiizu Nakanishi, Namiko Mitarai, Kim Sneppen posted to gene_regulation mathematical_model promoter theory transcription by jjray on 2008-10-17 19:00:37 as
	Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation. [My Copy] Molecular systems biology, Vol. 4 (14 October 2008) by Ophir Shalem, Orna Dahan, Michal Levo, et al.Maria R. Martinez, Itay Furman, Eran Segal, Yitzhak Pilpel posted to yeast degradation mrna stress_response transcription by jjray on 2008-10-15 17:58:49 as along with 1 person schwalb
	The Generation of Promoter-Mediated Transcriptional Noise in Bacteria [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000109. by Namiko Mitarai, Ian B. Dodd, Michael T. Crooks, Kim Sneppen posted to gene_expression noise promoter stochastic transcription by jjray on 2008-07-14 17:20:22 as along with 2 people Ema waszak
	The mean and noise of stochastic gene transcription [My Copy] Journal of Theoretical Biology, Vol. 253, No. 2. (21 July 2008), pp. 271-280. by Moxun Tang posted to gene_expression mathematical_model noise stochastic transcription by jjray on 2008-06-30 16:19:47 as along with 3 people bertelsen ddcttrl balicea
	Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription [My Copy] Cell, Vol. 133, No. 4. (16 May 2008), pp. 716-726. by Hinrich Boeger, Joachim Griesenbeck, Roger D. Kornberg posted to chromatin eukaryote gene_expression gillespie_algorithm mathematical_model nucleosome stochastic transcription by jjray on 2008-05-16 20:34:56 as along with 1 person emptyhb
	A Kinetic Model of Transcription Initiation by RNA Polymerase [My Copy] Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 520-529. by Xiao-Chuan Xue, Fei Liu, Zhong-Can Ou-Yang posted to biophysics energy gibbs mathematical_model promoter transcription by jjray on 2008-05-05 20:46:17 as along with 2 people Vincent_Rouilly ocs
	Crystal structure of the [lgr] repressor and a model for pairwise cooperative operator binding [My Copy] Nature, Vol. 452, No. 7190. (24 April 2008), pp. 1022-1025. by Steven Stayrook, Peera Jaru-Ampornpan, Jenny Ni, Ann Hochschild, Mitchell Lewis posted to 3-dimensional_structure cooperativity dna_binding gene_regulation transcription by jjray on 2008-04-23 23:37:03 as
	Nuclear Receptor-Enhanced Transcription Requires Motor- and LSD1-Dependent Gene Networking in Interchromatin Granules [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 996-1010. by Esperanza Nunez, Young-Soo Kwon, Kasey R. Hutt, et al.Qidong Hu, Maria D. Cardamone, Kenneth A. Ohgi, Ivan Garcia-Bassets, David W. Rose, Christopher K. Glass, Michael G. Rosenfeld, Xiang-Dong Fu posted to chromatin gene_expression gene_network nucleus transcription transcriptional_reprogramming by jjray on 2008-04-23 23:35:16 as along with 1 person dquest
	Energy Constraints on the Evolution of Gene Expression [My Copy] Mol Biol Evol, Vol. 22, No. 6. (1 June 2005), pp. 1365-1374. by Andreas Wagner posted to energy evolution gene_expression transcription translation by jjray on 2008-04-03 16:05:36 as along with 4 people operon michaelbarton jknabe Ema
	Statistical modeling of transcription factor binding affinities predicts regulatory interactions. [My Copy] PLoS Comput Biol, Vol. 4, No. 3. (March 2008) by T. Manke, H. G. Roider, M. Vingron posted to dna_binding gene_regulation statistical_model transcription by jjray on 2008-03-31 21:37:11 as along with 2 people maximilianh eskay
	Transcription and noise in negative feedback loops [My Copy] Biosystems, Vol. 91, No. 1. (January 2008), pp. 76-82. by J. C. Nacher, T. Ochiai posted to feedback gene_regulation noise transcription by jjray on 2008-03-31 18:54:43 as
	Transcriptional control of noise in gene expression [My Copy] Proceedings of the National Academy of Sciences (19 March 2008), 0707904105. by Alvaro Sanchez, Jane Kondev posted to gene_expression noise stochastic transcription by jjray on 2008-03-20 15:18:58 as along with 7 people balabu margaritis lambda ddcttrl austin sbottani inesdesantiago
	Ab initio thermodynamic modeling of distal multisite transcription regulation. [My Copy] Nucleic Acids Res, Vol. 36, No. 3. (February 2008), pp. 726-731. by L. Saiz, J. M. Vilar posted to bacteria biophysics mathematical_model thermodynamics transcription transcriptional_regulation by jjray on 2008-03-14 17:29:29 as along with 1 person maximilianh
	Transcriptional stochasticity in gene expression [My Copy] Journal of Theoretical Biology, Vol. 238, No. 2. (21 January 2006), pp. 348-367. by Tomasz Lipniacki, Pawel Paszek, Anna Marciniak-Czochra, Allan R. Brasier, Marek Kimmel posted to mathematical_model stochastic transcription transcriptional_burst by jjray on 2008-02-27 22:03:27 as along with 5 people bayesian bh2 balabu cottrell klo
	Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different? [My Copy] Mol Microbiol, Vol. 49, No. 1. (July 2003), pp. 1-9. by V. Venturi posted to bacteria bara e_coli sigma_factor transcription by jjray on 2008-02-18 17:53:09 as
	Specificity and robustness in transcription control networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 4. (19 February 2002), pp. 2072-2077. by A. M. Sengupta, M. Djordjevic, B. I. Shraiman posted to mutational_entropy network robustness transcription by jjray on 2008-01-23 21:18:48 as along with 2 people rouault jstajic
	Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development. [My Copy] Proc Natl Acad Sci U S A (25 October 2007) by John E E. Pimanda, Katrin Ottersbach, Kathy Knezevic, et al.Sarah Kinston, Wan Y I Y. Chan, Nicola K K. Wilson, Josette-Renée R. Landry, Andrew D D. Wood, Anja Kolb-Kokocinski, Anthony R R. Green, David Tannahill, Georges Lacaud, Valerie Kouskoff, Berthold Göttgens posted to development gene_regulation stem_cell transcription triad by jjray on 2008-01-16 16:57:07 as along with 2 people maximilianh idonaldson
	Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. [My Copy] Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136. by T. B. Kepler, T. C. Elston posted to biophysics mathematical_model stochastic transcription by jjray on 2007-12-10 17:12:45 as along with 2 people monod margaritis
	Transcription of individual genes in eukaryotic cells occurs randomly and infrequently. [My Copy] Immunol Cell Biol, Vol. 72, No. 2. (April 1994), pp. 177-185. by I. L. Ross, C. M. Browne, D. A. Hume posted to gene_regulation macrophage stochastic transcription by jjray on 2007-10-28 19:51:52 as
	Negative autoregulation speeds the response times of transcription networks. [My Copy] J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793. by N. Rosenfeld, M. B. Elowitz, U. Alon posted to feedback mathematical_model network response_time synthetic_biology transcription by jjray on 2007-09-05 04:09:24 as along with 5 people Antoine_Decrulle balabu rklancer bayesian margaritis
	How gene order is influenced by the biophysics of transcription regulation [My Copy] PNAS (20 August 2007), 0700672104. by Grigory Kolesov, Zeba Wunderlich, Olga N. Laikova, Mikhail S. Gelfand, Leonid A. Mirny posted to biophysics gene_order gene_regulation mathematical_model transcription by jjray on 2007-08-21 15:24:30 as along with 6 people madhadron margaritis zwang Jporci maximilianh lambda
	In vivo dynamics of RNA polymerase II transcription [My Copy] Nat Struct Mol Biol, Vol. 14, No. 9. (5 September 2007), pp. 796-806. by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, et al.Yehuda Brody, Shailesh M. Shenoy, Robert D. Phair, Robert H. Singer posted to gene_expression kinetics mrna single_cell transcription by jjray on 2007-08-13 21:20:53 as along with 5 people and 3 groups dpollard dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
	Diffusion of transcription factors can drastically enhance the noise in gene expression. [My Copy] Biophys J, Vol. 91, No. 12. (15 December 2006), pp. 4350-4367. by J. S. van Zon, M. J. Morelli, S. Tănase-Nicola, P. R. ten Wolde posted to gene_regulation gillespie_algorithm mathematical_model noise stochastic transcription by jjray on 2007-05-30 19:23:39 as along with 3 people balabu margaritis ddcttrl
	Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell [My Copy] Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194. by Johan Elf, Gene-Wei Li, X. Sunney Xie posted to biophysics e_coli gene_regulation transcription by jjray on 2007-05-25 19:47:51 as along with 8 people and 3 groups OliverHarriman dpollard madhadron balabu nickluscombe samjlord austin ras EisenLab EBI-regulation moernerlab
	The Proteasome Restricts Permissive Transcription at Tissue-Specific Gene Loci in Embryonic Stem Cells [My Copy] Cell, Vol. 127, No. 7. (29 December 2006), pp. 1375-1388. by Henrietta Szutorisz, Andrew Georgiou, Laszlo Tora, Niall Dillon posted to es_cell noise proteasome transcription by jjray on 2007-04-09 15:39:18 as along with 3 people and 1 group inesdesantiago brant tdmckee EisenLab
	Transcriptional Pulsing of a Developmental Gene [My Copy] Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025. by Jonathan R. Chubb, Tatjana Trcek, Shailesh M. Shenoy, Robert H. Singer posted to gene_regulation noise promoter transcription transcriptional_burst by jjray on 2007-02-27 00:49:11 as along with 3 people and 1 group emilyhare qfwills margaritis EisenLab
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to transcription systems_approach microfluidics gene_regulation biophysics by jjray on 2007-01-12 19:57:23 as along with 9 people and 2 groups absterga dpollard emilyhare adepace aswin skoch3 blobbybirdman emptyhb brant EisenLab Koch_Lab
	Variability and memory of protein levels in human cells [My Copy] Nature (19 November 2006) by Alex Sigal, Ron Milo, Ariel Cohen, et al.Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon posted to transcription systems_approach stochastic noise gene_regulation by jjray on 2007-01-10 19:17:14 as along with 4 people and 3 groups icases marcius margaritis cjeans BioinfoCIPF SGU-CIPF TNT
	Promoter Crosstalk Effects on Gene Expression [My Copy] Journal of Molecular Biology, Vol. 365, No. 4. (26 January 2007), pp. 911-920. by Mathias Hampf, Manfred Gossen posted to crosstalk gene_regulation noise promoter systems_approach transcription by jjray on 2007-01-04 16:57:06 as along with 1 person margaritis
	Stochastic mRNA Synthesis in Mammalian Cells [My Copy] PLoS Biology, Vol. 4, No. 10. (1 October 2006), e309. by Arjun Raj, Charles S. Peskin, Daniel Tranchina, Diana Y. Vargas, Sanjay Tyagi posted to gene_regulation mammalian mathematical_model mrna noise stochastic transcription transcriptional_burst by jjray on 2006-09-12 21:07:11 as along with 7 people nirfriedman madhadron balabu cottrell qfwills johncumbers margaritis
	Autocrine/paracrine IFN-alphabeta mediates the lipopolysaccharide-induced activation of transcription factor Stat1alpha in mouse macrophages: pivotal role of Stat1alpha in induction of the inducible nitric oxide synthase gene. [My Copy] J Immunol, Vol. 161, No. 9. (1 November 1998), pp. 4803-4810. by J. J. Gao, M. B. Filla, M. J. Fultz, S. N. Vogel, S. W. Russell, W. J. Murphy posted to autocrine_paracrine biochemistry cytokine gene_regulation ifn-gamma immune_activation murine_macrophage network_motifs nitric_oxide stat1 transcription by jjray on 2005-09-16 21:19:31 as
	Subunit structure of regulator proteins influences the design of gene circuitry: analysis of perfectly coupled and completely uncoupled circuits. [My Copy] J Mol Biol, Vol. 248, No. 4. (12 May 1995), pp. 739-755. by W. S. Hlavacek, M. A. Savageau posted to biochemical_systems_theory evolution feedback gene_regulation mathematical_model mathematically_controlled_comparison network network_motifs robustness systems_approach temporal_response transcription by jjray on 2005-08-31 20:38:54 as

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bacteria	291
mathematical_model	257
gene_regulation	255
stochastic	198
signaling	157
evolution	144
mycobacterium_tuberculosis	139
e_coli	134
two-component_system	134
noise	133
network	131
feedback	129
review	103
biophysics	101
gene_expression	85
t_cell	60
immune_activation	59
method	58
biochemistry	56
transcription	56
bacillus_subtilis	54
tnf	53
theory	52
murine_macrophage	51
physics	51
chemokine	50
chemotaxis	48
robustness	44
metabolism	38
network_motifs	38
nitric_oxide	38
quantitative_data	37
sporulation	37
systems_approach	37
thermodynamics	36
bistability	34
simulation	34
dynamical_system	33
phopq	33
spo0	33
phosphorylation	32
ifn-gamma	30
regulatory_t_cell	30
development	29
human_macrophage	29
information	29
kinetics	29
mrna	29
promoter	29
salmonella	29
oscillation	28
granuloma	27
spatial	26
synthetic_biology	26
transcriptional_regulation	26
nf-kappab	25
stability	25
eukaryote	23
macrophage	22
dynamics	21
gillespie_algorithm	21
yeast	21
biochemical_systems_theory	20
complexity	20
growth_rate	20
sigma_factor	20
cytokine	19
iron	19
positive_feedback	19
statistical_mechanics	19
evolutionary_dynamics	18
non-equilibrium	18
apoptosis	17
gene_order	17
opinion	17
sensitivity_analysis	17
toll-like_receptor	17
diffusion	16
history	16
host-pathogen_interaction	16
human_monocyte	16
inos	16
bara	15
chromosome_organization	15
mathematically_controlled_comparison	15
phenotypic_heterogeneity	15
adaptation	14
feedforward	14
game_theory	14
gene_network	14
chemical_reaction	13
computation	13
crosstalk	13
degradation	13
design_principles	13
dna_binding	13
immune_cell_kinetics	13
quantum_mechanics	13
csra	12
response_time	12
sensitivity	12
translation	12
ccl5	11
energy	11
genetics	11
macrophage_activation	11
optimization	11
transcriptional_burst	11
ccl2	10
distribution	10
ecology	10
langevin	10
mathematics	10
modularity	10
mutation	10
neutrophil	10
stress_response	10
textbook	10
3-dimensional_structure	9
atp	9
dna	9
immunology	9
lam	9
lps	9
mouse	9
operon	9
polarity	9
population_genetics	9
recruitment	9
statistical_method	9
statistical_physics	9
brownian_motion	8
cooperativity	8
criticality	8
entropy	8
fokker-planck	8
frequency	8
human	8
hysteresis	8
large_deviations	8
lung	8
mathematical_biology	8
monte_carlo	8
neuroscience	8
parameter	8
phage	8
quorum_sensing	8
recombination	8
statistics	8
temporal_response	8
agent_based	7
chaos	7
delay	7
enzyme	7
graph_theory	7
intracellular	7
phagocytosis	7
phenotype	7
protein_interactions	7
stem_cell	7
bifurcation	6
canalization	6
conformational_dynamics	6
data_fitting	6
detailed_balance	6
drosophila	6
economics	6
evolvability	6
jf	6
macrophage_deactivation	6
multiscale	6
mycobacterium_bovis	6
phagosome	6
philosophy_of_science	6
population	6
power_law	6
protein_folding	6
socs1	6
synergistic_signals	6
timescale	6
transcriptional_reprogramming	6
algorithm	5
biology_as_engineering	5
ergodic	5
fluid_flow	5
geometric	5
inflammation	5
mechanism	5
necrosis	5
pattern_formation	5
prokaryote	5
ratchet	5
receptor	5
rni	5
signaling_cascade	5
sos	5
stat1	5
tor	5
antagonist	4
bursting	4
cell_polarization	4
chemical_physics	4
commentary	4
cxcl9	4
cxcr3	4
dose_response	4
dynamic_range	4
editorial	4
epistasis	4
fitness_landscape	4
fluctuation-dissipation	4
genome	4
irf-1	4
kinetic_proofreading	4
latency	4
markov_chain	4
mutual_information	4
network_inference	4
pathogen_killing	4
persister	4
phylogeny	4
protein_binding	4
rare_events	4
rate	4
repressilator	4
shea-ackers	4
steady_state	4
synergistic	4
tau_leap	4
zero-order_ultrasensitivity	4
analysis	3
antibiotics	3
bayesian_inference	3
b_cell	3
book	3
ccr5	3
cell_cycle	3
cell_division	3
co-culture	3
competence	3
correlation	3
ctl	3
data	3
demand_theory	3
differential_equations	3
early_immunity	3
endothelium	3
extrinsic_noise	3
ferritin	3
flow_cytometry	3
foxp3	3
fractal	3
gibbs	3
hamiltonian	3
heat_shock	3
historical_contingency	3
lymphocyte	3
mode-of-control	3
mutational_entropy	3
neural_network	3
nucleus	3
phobr	3
physical_limit	3
potential	3
probability	3
random_walk	3
reaction-diffusion	3
receptor_binding	3
replicator_equation	3
roi	3
scale-free	3
shannon_entropy	3
siderophore	3
signal_specificity	3
single_cell	3
spin_glass	3
threshold_signal	3
timing	3
trade-off	3
tsc	3
adhesion_molecules	2
adiabatic_elimination	2
artificial_evolution	2
autocrine_paracrine	2
binding_constant	2
biological_uncertainty_principle	2
bliss_independence	2
boolean_network	2
bottleneck	2
brownian_dynamics	2
ccr2	2
cell_size	2
chemistry	2
chemokine_paradox	2
chromatin	2
convergent_evolution	2
cooperation	2
copy_number	2
cost-benefit	2
cytoplasm	2
database	2
deconvolution	2
dense_overlapping_regulon	2
dimerization	2
dual_feedback_motif	2
endothelial_cell	2
es_cell	2
flexibility	2
fluorescence	2
fragility	2
genetic_linkage	2
global_regulator	2
goldbeter-koshland	2
hierarchy	2
horizontal_gene_transfer	2
ider	2
intrinsic_protein_disorder	2
in_vitro	2
labile_iron_pool	2
macrodomain	2
macrophage_mtb_moi_upper_limit	2
mammalian	2
microarray	2
microenvironment	2
molecular_crowding	2
motif_compositions	2
mutational_robustness	2
nadph_phagocyte_oxidase	2
nonlinear	2
notes	2
nucleosome	2
numerical_methods	2
ornsteinuhlenbeck	2
overexpression	2
pde	2
periodic	2
photosynthesis	2
physical_chemistry	2
piecewise_power-law	2
poisson_process	2
polymer	2
proportion	2
rat	2
rate_saturation	2
rat_macrophage	2
regulon	2
rrna	2
secretion	2
spectral	2
statistical_model	2
statistical_sensitivity	2
strong_inference	2
survival_strategy	2
systems_biology	2
time_series	2
tumor	2
turbulence	2
type-1_ifn	2
ultrasensitivity	2
uncertainty_principle	2
writing	2
antibody	1
approximation	1
astrobiology	1
behavior	1
branching_process	1
causality	1
c_elegans	1
cell_turn_angle	1
cellular_automaton	1
clinical	1
codon_bias	1
coherent_coupling	1
component_relevance_ranking	1
convolution	1
cxcl11	1
cytochrome_oxidase	1
cytotoxic	1
dendritic_cell	1
deterministic	1
dna_replication	1
drift	1
eigenworm	1
elongation	1
endoplasmic_reticulum	1
equilibrium	1
ess	1
estimation	1
falsification	1
fasl	1
fdr	1
filter	1
focal_secretion	1
formyl_peptides	1
free_energy	1
genetic_variation	1
gfp	1
gradient	1
granular_dynamics	1
group_selection	1
half-life	1
hilbert_space	1
hiv	1
homeostatic_circuit	1
hormesis	1
il-10	1
il-12	1
il-2	1
induction	1
infliximab	1
inhertiance	1
intron	1
iron_percent_acquisition	1
islets_of_langerhans	1
just-in-time	1
kinetic_insulation	1
kolmogorov_complexity	1
kolmogorov-smirnov	1
laplace_transform	1
lattice	1
leishmania_major	1
lhs	1
limit_cycle	1
lip	1
lipid_domain	1
localization	1
lymph_node	1
manhattan_project	1
mass-action	1
maximum_likelihood	1
memristor	1
met-leu-phe	1
metropolis-hastings	1
metropolis_rule	1
michaelis-menten	1
microfluidics	1
migration	1
mitochondria	1
mixed_feedback	1
molecular_dynamics	1
motility	1
mtsa-10	1
multimerization	1
mycobacteria	1
mycobacterium_marinum	1
mycobacterium_smegmatis	1
myd88	1
myosin	1
myxobacteria	1
neutral_evolution	1
nkt	1
non-human_primate	1
organization	1
overshoot	1
oxidative_stress	1
percolation	1
phase_coherence	1
phase_transition	1
phenotypic_mutation	1
philosophy	1
pleiotropy	1
potts_model	1
ppar-gamma	1
propensity	1
proteasome	1
protein_export	1
protein_function	1
proteome	1
quantitative_response	1
quantum_field_theory	1
rapamycin	1
reciprocal_adaptation	1
refseq	1
relativity	1
ribosome	1
rna	1
rnase	1
sampling	1
sde	1
series	1
siphon	1
sirna	1
smoluchowski_diffusion	1
speculation	1
stochastic_resonance	1
stoichiometry	1
substrate_competition	1
supercoiling	1
superoxide	1
superstatistics	1
symbolic_dynamics	1
szilard	1
tgfbeta	1
th1	1
time	1
transcriptional_attentuation	1
transendothelial_migration	1
triad	1
volume	1

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