NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results Export

@article{citeulike:4001428, abstract = {Summary: NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria. Availability: A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST. Contact: lagnel@her.hcmr.gr; ioannis@iti.gr Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp067}, author = {Lagnel, Jacques and Tsigenopoulos, Costas S. and Iliopoulos, Ioannis}, citeulike-article-id = {4001428}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp067}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/6/824}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19181685}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19181685}, day = {15}, doi = {10.1093/bioinformatics/btp067}, issn = {1460-2059}, journal = {Bioinformatics}, keywords = {bioinformatics, blast, sequence-alignment, visualization}, month = {March}, number = {6}, pages = {824--826}, posted-at = {2009-02-10 21:07:29}, priority = {2}, title = {NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results}, url = {http://dx.doi.org/10.1093/bioinformatics/btp067}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4001428 L3 - citeulike-article-id:4001428 N2 - Summary: NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria. Availability: A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST. Contact: lagnel@her.hcmr.gr; ioannis@iti.gr Supplementary information: Supplementary data are available at Bioinformatics online. 10.1093/bioinformatics/btp067 IS - 6 JF - Bioinformatics SN - 1460-2059 EP - 826 TI - NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results VL - 25 SP - 824 KW - bioinformatics KW - blast KW - sequence-alignment KW - visualization AU - Lagnel, Jacques AU - Tsigenopoulos, Costas AU - Iliopoulos, Ioannis PY - 2009/03/15/ UR - http://dx.doi.org/10.1093/bioinformatics/btp067 ER -