CiteULike: jmeppley's 454-sequencing [9 articles]

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

Environmental Microbiology, Vol. 9999, No. 9999. (2009)

by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz

posted to sequencing-error rrna pyrosequencing diversity 454-sequencing 16s-rrna by jmeppley on 2009-09-14 18:28:56 as

along with 3 people and 1 group n00c jgill skembel iSEEM

SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

Bioinformatics (6 January 2009), btp011.

by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg

posted to 454-sequencing assembly bioinformatics population-genetics software by jmeppley on 2009-01-12 15:42:57 as read

along with 5 people semrich druvus felsani jasontsai djkt

Viral population estimation using pyrosequencing.

PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074.

by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel

posted to 454-sequencing metapopulation population-genetics by jmeppley on 2008-09-03 17:36:45 as read

along with 6 people and 2 groups nfparrish ghattem jonilaserson hpaces bmaust djkt SIMR bioinformatics iSEEM

Pyrobayes: an improved base caller for SNP discovery in pyrosequences

Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181.

by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth

posted to 454-sequencing base-calling software by jmeppley on 2008-04-17 21:25:40 as

along with 9 people and 1 group n00c jonilaserson natstreet druvus hpaces orzenil azazello guhjy mariakmejia gatech-compgenomics

Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.

BMC genomics, Vol. 7 (23 August 2006), 216.

by Robert Pinard, Alex de Winter, Gary J. Sarkis, et al.Mark B. Gerstein, Karrie R. Tartaro, Ramona N. Plant, Michael Egholm, Jonathan M. Rothberg, John H. Leamon

posted to 454-sequencing by jmeppley on 2007-03-08 04:05:37 as

along with 6 people songpku floatingpoint brdwilde rabu mcox bozdagd

Using pyrosequencing to shed light on deep mine microbial ecology.

BMC Genomics, Vol. 7 (2006)

by R. A. Edwards, B. Rodriguez-Brito, L. Wegley, et al.M. Haynes, M. Breitbart, D. M. Peterson, M. O. Saar, S. Alexander, E. C. Alexander, F. Rohwer

posted to 454-sequencing by jmeppley on 2007-03-08 04:05:34 as

along with 8 people and 1 group Thaverkamp skembel balicea rabu xingxu mcox darioacha werwiesel iSEEM

Rapid and accurate pyrosequencing of angiosperm plastid genomes

BMC Plant Biology, Vol. 6 (25 August 2006), 17.

by Michael J. Moore, Amit Dhingra, Pamela S. Soltis, et al.Regina Shaw, William G. Farmerie, Kevin M. Folta, Douglas E. Soltis

posted to 454-sequencing by jmeppley on 2007-03-08 04:03:45 as

454 sequencing put to the test using the complex genome of barley

BMC Genomics, Vol. 7, No. 1. (26 October 2006), 275.

by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy Close, Beat Keller, Nils Stein

posted to 454-sequencing by jmeppley on 2007-03-08 04:03:32 as

along with 8 people and 3 groups n00c orzenil GustavoLacerda balicea ghattem azazello cisevol tpreeprem MBLAB BergmanLab gatech-compgenomics

Genome sequencing in microfabricated high-density picolitre reactors

Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380.

by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg

	Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to sequencing-error rrna pyrosequencing diversity 454-sequencing 16s-rrna by jmeppley on 2009-09-14 18:28:56 as along with 3 people and 1 group n00c jgill skembel iSEEM
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted to 454-sequencing assembly bioinformatics population-genetics software by jmeppley on 2009-01-12 15:42:57 as along with 5 people semrich druvus felsani jasontsai djkt
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted to 454-sequencing metapopulation population-genetics by jmeppley on 2008-09-03 17:36:45 as along with 6 people and 2 groups nfparrish ghattem jonilaserson hpaces bmaust djkt SIMR bioinformatics iSEEM
	Pyrobayes: an improved base caller for SNP discovery in pyrosequences [My Copy] Nat Meth, Vol. 5, No. 2. (13 February 2008), pp. 179-181. by Aaron R. Quinlan, Donald A. Stewart, Michael P. Stromberg, Gabor T. Marth posted to 454-sequencing base-calling software by jmeppley on 2008-04-17 21:25:40 as along with 9 people and 1 group n00c jonilaserson natstreet druvus hpaces orzenil azazello guhjy mariakmejia gatech-compgenomics
	Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. [My Copy] BMC genomics, Vol. 7 (23 August 2006), 216. by Robert Pinard, Alex de Winter, Gary J. Sarkis, et al.Mark B. Gerstein, Karrie R. Tartaro, Ramona N. Plant, Michael Egholm, Jonathan M. Rothberg, John H. Leamon posted to 454-sequencing by jmeppley on 2007-03-08 04:05:37 as along with 6 people songpku floatingpoint brdwilde rabu mcox bozdagd
	Using pyrosequencing to shed light on deep mine microbial ecology. [My Copy] BMC Genomics, Vol. 7 (2006) by R. A. Edwards, B. Rodriguez-Brito, L. Wegley, et al.M. Haynes, M. Breitbart, D. M. Peterson, M. O. Saar, S. Alexander, E. C. Alexander, F. Rohwer posted to 454-sequencing by jmeppley on 2007-03-08 04:05:34 as along with 8 people and 1 group Thaverkamp skembel balicea rabu xingxu mcox darioacha werwiesel iSEEM
	Rapid and accurate pyrosequencing of angiosperm plastid genomes [My Copy] BMC Plant Biology, Vol. 6 (25 August 2006), 17. by Michael J. Moore, Amit Dhingra, Pamela S. Soltis, et al.Regina Shaw, William G. Farmerie, Kevin M. Folta, Douglas E. Soltis posted to 454-sequencing by jmeppley on 2007-03-08 04:03:45 as
	454 sequencing put to the test using the complex genome of barley [My Copy] BMC Genomics, Vol. 7, No. 1. (26 October 2006), 275. by Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy Close, Beat Keller, Nils Stein posted to 454-sequencing by jmeppley on 2007-03-08 04:03:32 as along with 8 people and 3 groups n00c orzenil GustavoLacerda balicea ghattem azazello cisevol tpreeprem MBLAB BergmanLab gatech-compgenomics
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454-sequencing community-genomics genetics genomics sequencing by jmeppley on 2007-03-05 18:22:04 as along with 38 people and 5 groups n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM

jmeppley's 454-sequencing [9 articles] Export

jmeppley's tags

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ecology	124
model	120
evolution	117
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