jmeppley's bacteria [59 articles] Export

Recent papers added to jmeppley's library classified by the tag bacteria. You can also see everyone's bacteria.

	A major clade of prokaryotes with ancient adaptations to life on land [My Copy] Mol Biol Evol (10 November 2008), msn247. by Fabia U. Battistuzzi, Blair S. Hedges posted to bacteria evolution tree-of-life by jmeppley on 2009-02-12 03:08:11 as along with 2 people and 1 group djkt skato_toyaku iSEEM
	Bacterial Programmed Cell Death and Multicellular Behavior in Bacteria [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e135. by Hanna Engelberg-Kulka, Shahar Amitai, Ilana Kolodkin-Gal, Ronen Hazan posted to bacteria biofilm microbial-community microbial-interaction by jmeppley on 2006-10-27 01:48:12 as
	Multilocus Sequence Typing of Bacteria [My Copy] Annual Review of Microbiology, Vol. 60, No. 1. (2006), pp. 561-588. by Martin C. J. Maiden posted to bacteria community-genomics mlst by jmeppley on 2006-09-13 00:26:16 as
	Bacterial Small-Molecule Signaling Pathways [My Copy] Science, Vol. 311, No. 5764. (24 February 2006), pp. 1113-1116. by Andrew Camilli, Bonnie L. Bassler posted to bacteria microorganism quorum-sensing signalling by jmeppley on 2006-07-27 16:58:41 as along with 3 people and 1 group Yanno stevanspringer CareyNadell FAB-lab
	Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. [My Copy] Nature, Vol. 399, No. 6734. (27 May 1999), pp. 323-329. by K. E. Nelson, R. A. Clayton, S. R. Gill, et al.M. L. Gwinn, R. J. Dodson, D. H. Haft, E. K. Hickey, J. D. Peterson, W. C. Nelson, K. A. Ketchum, L. McDonald, T. R. Utterback, J. A. Malek, K. D. Linher, M. M. Garrett, A. M. Stewart, M. D. Cotton, M. S. Pratt, C. A. Phillips, D. Richardson, J. Heidelberg, G. G. Sutton, R. D. Fleischmann, J. A. Eisen, O. White, S. L. Salzberg, H. O. Smith, J. C. Venter, C. M. Fraser posted to archaea bacteria comparative-genomics horizontal-gene-transfer by jmeppley on 2006-03-21 17:24:15 as along with 2 people and 2 groups ana karfunkel structural_bioinformatics Bioinformatics
	The ideal free distribution and bacterial growth on two substrates [My Copy] Theoretical Population Biology, Vol. 69, No. 2. (March 2006), pp. 181-191. by Vlastimil Krivan posted to bacteria model population-growth resource by jmeppley on 2006-01-31 20:09:13 as along with 1 person TheChaoticFlame
	Towards a comprehensive view of the bacterial cell wall [My Copy] Trends in Microbiology, Vol. 13, No. 12. (December 2005), pp. 569-574. by B. Dmitriev, F. Toukach, S. Ehlers posted to bacteria by jmeppley on 2005-11-29 02:00:43 as along with 3 people AdamShaw mbeeby gabrieljoelmitchell
	Design principles of a bacterial signalling network [My Copy] Nature, Vol. 438, No. 7067., pp. 504-507. by Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik posted to bacteria network regulation by jmeppley on 2005-11-28 16:02:01 as along with 13 people rklancer abhik monod chrn bayesian alexg ryang balicea wnpx balabu entropy comb jjray
	New Findings on Evolution of Metal Homeostasis Genes: Evidence from Comparative Genome Analysis of Bacteria and Archaea [My Copy] Appl. Environ. Microbiol., Vol. 71, No. 11. (2005), pp. 7083-7091. by J. M. Coombs, T. Barkay posted to archaea bacteria comparative-genomics evolution horizontal-gene-transfer by jmeppley on 2005-11-09 16:43:08 as
	Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. [My Copy] Appl Environ Microbiol, Vol. 70, No. 8. (August 2004), pp. 4831-4839. by E. Jaspers, J. Overmann posted to 16s-rrna bacteria diversity ecology genomics x-fer2-strains by jmeppley on 2005-10-31 15:52:56 as along with 1 person Stenuite
	Successional changes in bacterial assemblage structure during epilithic biofilm development [My Copy] Ecology, Vol. 82, No. 2. (FEB 2001), pp. 555-566. by C. R. Jackson, P. F. Churchill, E. E. Roden posted to 16s-rrna abundance assembly bacteria biofilm biofilm-ecology community diversity microbial-ecology x-biofilm-ecology by jmeppley on 2005-10-30 01:57:09 as
	Metal toxicity affects fungal and bacterial activities in soil differently. [My Copy] Appl Environ Microbiol, Vol. 70, No. 5. (May 2004), pp. 2966-2973. by R. M. Rajapaksha, M. A. Tobor-Kapłon, E. Bååth posted to bacteria soil toxic-metal x-amd-model-params by jmeppley on 2005-10-27 15:36:54 as along with 1 person paleorthid
	Reconstructing the metabolic network of a bacterium from its genome. [My Copy] Trends in microbiology, Vol. 13, No. 11. (November 2005), pp. 550-558. by C. Francke, R. J. Siezen, B. Teusink posted to bacteria genomics metabolic-network metabolism by jmeppley on 2005-10-26 19:15:48 as along with 6 people and 2 groups neilswainston kuhn JeremyZucker gurkanbebek bsmagic shung Bioinformatics bioinplant
	The ring of life provides evidence for a genome fusion origin of eukaryotes [My Copy] Nature, Vol. 431, No. 7005. (2004), pp. 152-155. by Maria C. Rivera, James A. Lake posted to archaea bacteria genomics phylogenetics tree-of-life x-genomics by jmeppley on 2005-10-23 04:54:30 as along with 1 person tomhebbron
	The Relationship between Species Diversity and Stability: An Experimental Approach with Protozoa and Bacteria [My Copy] Ecology, Vol. 49, No. 6. (1968), pp. 1091-1101. by N. G. Hairston, J. D. Allan, R. K. Colwell, et al.D. J. Futuyma, J. Howell, M. D. Lubin, J. Mathias, J. H. Vandermeer posted to bacteria diversity diversity-stability ecology microbial-ecology stability x-diversity-stability by jmeppley on 2005-10-20 21:36:10 as
	Nitrogenase gene diversity and microbial community structure: a cross-system comparison [My Copy] Environmental microbiology, Vol. 5, No. 7. (JUL 2003), pp. 539-554. by J. P. Zehr, B. D. Jenkins, S. M. Short, G. F. Steward posted to archaea bacteria community-structure diversity evolution nifh nitrogen-fixation x-community-gene-expression by jmeppley on 2005-08-31 18:42:24 as
	Intergeneric communication in dental plaque biofilms [My Copy] Journal of Bacteriology, Vol. 182, No. 24. (DEC 2000), pp. 7067-7069. by H. Xie, G. S. Cook, J. W. Costerton, G. Bruce, T. M. Rose, R. J. Lamont posted to bacteria biofilm gene-expression refworks-import by jmeppley on 2005-08-31 18:42:24 as
	Multicellular Organization in a Degradative Biofilm Community [My Copy] Applied and Environmental Microbiology, Vol. 60, No. 2. (1994), pp. 434-446. by G. M. Wolfaardt, J. R. Lawrence, R. D. Robarts, S. J. Caldwell, D. E. Caldwell posted to bacteria biofilm biofilm-structure confocal-laser-microscopy growth microbial-community x-biofilm by jmeppley on 2005-08-31 18:42:24 as
	The Role of Interactions, Sessile Growth, and Nutrient Amendments on the Degradative Efficiency of a Microbial Consortium [My Copy] Canadian journal of microbiology, Vol. 40, No. 5. (1994), pp. 331-340. by G. M. Wolfaardt, J. R. Lawrence, R. D. Robarts, D. E. Caldwell posted to bacteria consortia ecological-interaction microbial-interaction microorganism refworks-import system by jmeppley on 2005-08-31 18:42:24 as
	Prokaryotes: The unseen majority [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 12. (JUN 1998), pp. 6578-6583. by W. B. Whitman, D. C. Coleman, W. J. Wiebe posted to anaerobic-bacteria archaea bacteria biosphere microbial-biomass microorganism refworks-import by jmeppley on 2005-08-31 18:42:23 as
	Biofilm, city of microbes [My Copy] Journal of Bacteriology, Vol. 182, No. 10. (MAY 2000), pp. 2675-2679. by P. Watnick, R. Kolter posted to bacteria biofilm escherichia-coli exopolysaccharide gene-expression microbial-ecology refworks-import by jmeppley on 2005-08-31 18:42:23 as
	Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea [My Copy] Environmental microbiology, Vol. 6, No. 9. (SEP 2004), pp. 970-980. by A. H. Treusch, A. Kletzin, G. Raddatz, et al.T. Ochsenreiter, A. Quaiser, G. Meurer, S. C. Schuster, C. Schleper posted to archaea bacteria community-structure diversity microbial-diversity refworks-import by jmeppley on 2005-08-31 18:42:21 as
	Metagenomics - the key to the uncultured microbes [My Copy] Current opinion in microbiology, Vol. 7, No. 5. (OCT 2004), pp. 492-498. by W. R. Streit, R. A. Schmitz posted to bacteria community-genomics escherichia-coli nutrient-enrichment refworks-import soil by jmeppley on 2005-08-31 18:42:21 as
	Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers [My Copy] Environmental microbiology, Vol. 6, No. 4. (APR 2004), pp. 347-363. by Stralis N. Pavese, A. Sessitsch, A. Weilharter, et al.T. Reichenauer, J. Riesing, J. Csontos, J. C. Murrell, L. Bodrossy posted to 16s-rrna acidophile bacteria community-structure diversity microarray microbiology nitrogen-fixation refworks-import soil by jmeppley on 2005-08-31 18:42:21 as
	Biofilms as complex differentiated communities [My Copy] Annual Review of Microbiology, Vol. 56 (2002), pp. 187-209. by P. Stoodley, K. Sauer, D. G. Davies, J. W. Costerton posted to bacteria biofilm community escherichia-coli gene-expression intercellular-communication microorganism x-biofilm by jmeppley on 2005-08-31 18:42:21 as
	The effect of Fe-oxidizing bacteria on Fe-silicate mineral dissolution [My Copy] Chemical Geology, Vol. 180, No. 1-4. (OCT 2001), pp. 99-115. by C. M. Santelli, S. A. Welch, H. R. Westrich, J. F. Banfield posted to bacteria biooxidation iron iron-oxidation kinetics ph refworks-import temperature thiobacillus thiobacillus-ferrooxidans by jmeppley on 2005-08-31 18:42:20 as
	Environmental genomics, the big picture? [My Copy] FEMS microbiology letters, Vol. 231, No. 2. (2004), pp. 153-158. by F. Rodriguez-Valera posted to archaea bacteria biodiversity community-genomics diversity evolution genomics horizontal-gene-transfer microorganism x-fer2-strains by jmeppley on 2005-08-31 18:42:19 as
	Phenotypic features of Ferroplasma acidiphilum strains Y-T and Y-2 [My Copy] Microbiology, Vol. 71, No. 6. (2002), pp. 698-706. by T. A. Pivovarova, T. F. Kondrat'eva, S. G. Batrakov, et al.S. E. Esipov, V. I. Sheichenko, S. A. Bykova, A. M. Lysenko, G. I. Karavaiko posted to acidophile archaea bacteria ferroplasma ferroplasma-acidiphilum iron-oxidation refworks-import sp-nov thermoplasma thermoplasma-acidophilum by jmeppley on 2005-08-31 18:42:19 as
	Biofilms 2003: Emerging themes and challenges in studies of surface-associated microbial life [My Copy] Journal of Bacteriology, Vol. 186, No. 14. (JUL 2004), pp. 4427-4440. by M. R. Parsek, C. Fuqua posted to bacteria biofilm escherichia-coli gene-expression quorum-sensing sulfate-reduction x-biofilm by jmeppley on 2005-08-31 18:42:18 as
	Biooxidation of pyrite by defined mixed cultures of moderately thermophilic acidophiles in pH-controlled bioreactors: Significance of microbial interactions [My Copy] Biotechnology and bioengineering, Vol. 87, No. 5. (SEP 2004), pp. 574-583. by N. Okibe, D. B. Johnson posted to acid-mine-drainage acidophile bacteria biodiversity consortia growth iron-oxidation microorganism redox refworks-import sp-nov sulfur thermophile thiobacillus thiobacillus-caldus by jmeppley on 2005-08-31 18:42:18 as
	CASE: Complex adaptive systems ecology [My Copy] Advances in Microbial Ecology, Vol 15, Vol. 15 (1997), pp. 27-79. by J. Molin, S. Molin posted to automated-image-analysis bacteria confocal-laser-microscopy escherichia-coli fluorescent-in-situ-hybridization microbial-ecology nutrient-starvation perturbation refworks-import stress-resistance by jmeppley on 2005-08-31 18:42:18 as
	Channel Structures in Aerobic Biofilms of Fixed-Film Reactors Treating Contaminated Groundwater [My Copy] Applied and Environmental Microbiology, Vol. 61, No. 2. (FEB 1995), pp. 769-777. by A. A. Massoldeya, J. Whallon, R. F. Hickey, J. M. Tiedje posted to bacteria biofilm biofilm-structure bioremediation microbial-community refworks-import sulfate-reduction by jmeppley on 2005-08-31 18:42:17 as
	Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater [My Copy] Applied and Environmental Microbiology, Vol. 63, No. 1. (JAN 1997), pp. 270-276. by A. Massoldeya, R. Weller, L. Rioshernandez, J. Z. Zhou, R. F. Hickey, J. M. Tiedje posted to bacteria biofilm bioremediation competition microbial-ecology refworks-import succession by jmeppley on 2005-08-31 18:42:17 as
	Biofilms promote altruism [My Copy] Microbiology-Sgm, Vol. 150 (2004), pp. 2751-2760. by J. U. Kreft posted to bacteria biofilm coexistence community-ecology ecological-interaction escherichia-coli evolution growth individual-based-model microorganism model mutualism x-individual-based-model by jmeppley on 2005-08-31 18:42:14 as
	High-rate ferric sulfate generation by a Leptospirillum ferriphilum-dominated biofilm and the role of jarosite in Biomass retainment in a fluidized-bed reactor [My Copy] Biotechnology and bioengineering, Vol. 85, No. 7. (MAR 2004), pp. 697-705. by P. H. M. Kinnunen, J. A. Puhakka posted to acid-mine-drainage bacteria biofilm biooxidation ferriphilum fluorescent-in-situ-hybridization iron iron-oxidation kinetics leptospirillum redox refworks-import thiobacillus thiobacillus-ferrooxidans by jmeppley on 2005-08-31 18:42:14 as
	The microbiology of acidic mine waters [My Copy] Research in microbiology, Vol. 154, No. 7. (SEP 2003), pp. 466-473. by D. B. Johnson, K. B. Hallberg posted to acid-mine-drainage acidiphilium acidophile bacteria ferroplasma iron iron-oxidation leptospirillum microorganism refworks-import seasonal-variation sulfur thiobacillus by jmeppley on 2005-08-31 18:42:13 as
	The microbiology of acid mine drainage: genesis and biotreatment [My Copy] South African Journal of Science, Vol. 98, No. 5-6. (MAY 2002), pp. 249-255. by D. B. Johnson, M. A. Dziurla, A. Kolmert, K. B. Hallberg posted to acid-mine-drainage acidophile bacteria iron iron-oxidation pyrite redox refworks-import sulfate-reducing-bacteria sulfur thiobacillus thiobacillus-ferrooxidans by jmeppley on 2005-08-31 18:42:13 as
	Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray [My Copy] Applied and Environmental Microbiology, Vol. 70, No. 3. (MAR 2004), pp. 1767-1776. by B. D. Jenkins, G. F. Steward, S. M. Short, B. B. Ward, J. P. Zehr posted to bacteria diversity gene-expression microarray microbial-community nitrogen-fixation phylogenetics x-community-gene-expression by jmeppley on 2005-08-31 18:42:12 as
	Quorum sensing in Rhizobium sp strain NGR234 regulates conjugal transfer (tra) gene expression and influences growth rate [My Copy] Journal of Bacteriology, Vol. 185, No. 3. (FEB 2003), pp. 809-822. by X. S. He, W. Chang, D. L. Pierce, L. O. Seib, J. Wagner, C. Fuqua posted to bacteria biofilm biofilm-formation gene-expression growth-rate quorum-sensing refworks-import by jmeppley on 2005-08-31 18:42:11 as
	Microbial ecology of an extreme acidic environment, the Tinto River [My Copy] Applied and Environmental Microbiology, Vol. 69, No. 8. (AUG 2003), pp. 4853-4865. by Gonzalez E. Toril, Llobet E. Brossa, E. O. Casamayor, R. Amann, R. Amils posted to 16s-rrna acid-mine-drainage archaea bacteria biooxidation iron iron-oxidation leptospirillum leptospirillum-ferrooxidans microbial-ecology phylogenetics pyrite refworks-import thiobacillus thiobacillus-ferrooxidans by jmeppley on 2005-08-31 18:42:11 as
	Ferroplasma acidiphilum gen. nov., sp nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea [My Copy] International Journal of Systematic and Evolutionary Microbiology, Vol. 50 (2000), pp. 997-1006. by O. V. Golyshina, T. A. Pivovarova, G. I. Karavaiko, et al.T. F. Kondrat'eva, E. R. B. Moore, W. R. Abraham, H. Lunsdorf, K. N. Timmis, M. M. Yakimov, P. N. Golyshin posted to 16s-rrna acidophile archaea bacteria ferroplasma ferroplasma-acidiphilum iron-oxidation refworks-import sulfolobus by jmeppley on 2005-08-31 18:42:11 as
	Ecological strategy of bacteria: Specific nature of the problem [My Copy] Microbiology, Vol. 70, No. 4. (2001), pp. 379-383. by E. L. Golovlev posted to bacteria coaggregation coevolution ecology k-selection microbiology refworks-import selection soil by jmeppley on 2005-08-31 18:42:10 as
	Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm [My Copy] Applied and Environmental Microbiology, Vol. 67, No. 3. (MAR 2001), pp. 1351-1362. by A. Gieseke, U. Purkhold, M. Wagner, R. Amann, A. Schramm posted to bacteria biofilm community-structure diversity fluorescent-in-situ-hybridization microbial-community refworks-import by jmeppley on 2005-08-31 18:42:06 as
	Testing a simple rule for dominance in resource competition [My Copy] American Naturalist, Vol. 159, No. 3. (MAR 2002), pp. 305-319. by J. W. Fox posted to bacteria coexistence community-structure competition ecological-interaction food-web microbial-ecology microcosm population-dynamics predator-prey productivity refworks-import by jmeppley on 2005-08-31 18:42:05 as
	Seasonal variations in microbial populations and environmental conditions in an extreme acid mine drainage environment [My Copy] Applied and Environmental Microbiology, Vol. 65, No. 8. (AUG 1999), pp. 3627-3632. by K. J. Edwards, T. M. Gihring, J. F. Banfield posted to acid-mine-drainage acidophile bacteria biogeochemistry community-composition iron-mountain leptospirillum leptospirillum-ferrooxidans thiobacillus thiobacillus-ferrooxidans x-amd-model-params by jmeppley on 2005-08-31 18:42:04 as
	Characterization of Ferroplasma isolates and Ferroplasma acidarmanus sp nov., extreme acidophiles from acid mine drainage and industrial bioleaching environments [My Copy] Applied and Environmental Microbiology, Vol. 70, No. 4. (APR 2004), pp. 2079-2088. by M. Dopson, Baker C. Austin, A. Hind, J. P. Bowman, P. L. Bond posted to archaea bacteria dna gen-nov iron-mountain refworks-import rrna thiobacillus-caldus by jmeppley on 2005-08-31 18:42:02 as
	Role of Thiobacillus ferrooxidans and sulphur (sulphide)-dependent ferric-ion-reducing activity in the oxidation of sulphide minerals [My Copy] Applied Microbiology and Biotechnology, Vol. 45, No. 3. (APR 1996), pp. 377-382. by A. Das, A. K. Mishra posted to bacteria iron oxidation oxidoreductase purification reduction sulfur refworks-import by jmeppley on 2005-08-31 18:42:01 as
	Biofilms, the Customized Microniche [My Copy] Journal of Bacteriology, Vol. 176, No. 8. (APR 1994), pp. 2137-2142. by J. W. Costerton, Z. Lewandowski, D. Debeer, D. Caldwell, D. Korber, G. James posted to bacteria biofilm microbial-ecology x-biofilm z-paper-quals-modelling-proposal by jmeppley on 2005-08-31 18:41:58 as
	Microbial Biofilms [My Copy] Annual Review of Microbiology, Vol. 49 (1995), pp. 711-745. by J. W. Costerton, Z. Lewandowski, D. E. Caldwell, D. R. Korber, H. M. Lappinscott posted to bacteria biofilm exopolysaccharide microbial-community refworks-import by jmeppley on 2005-08-31 18:41:58 as
	Establishment of new genetic traits in a microbial biofilm community [My Copy] Applied and Environmental Microbiology, Vol. 64, No. 6. (JUN 1998), pp. 2247-2255. by B. B. Christensen, C. Sternberg, J. B. Andersen, et al.L. Eberl, S. Moller, M. Givskov, S. Molin posted to bacteria biofilm freshwater-ecology gene-expression horizontal-gene-transfer refworks-import by jmeppley on 2005-08-31 18:41:57 as

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refworks-import	173
community-genomics	134
ecology	124
model	120
evolution	117
software	96
horizontal-gene-transfer	91
diversity	83
microbial-ecology	72
bacteria	59
stability	57
genomics	51
bioinformatics	50
biofilm	48
food-web	48
microbial-diversity	48
ecosystem	47
z-paper-background	44
microbial-species	42
phylogenetics	42
statistics	40
genetics	39
population-genetics	39
community-structure	36
z-paper-fer1-fer2-species	35
acid-mine-drainage	34
marine-microbiology	34
recombination	34
comparative-genomics	32
microbial-community	31
iron-oxidation	30
community-ecology	29
hgt-detection	28
proteomics	28
archaea	26
kinetics	26
thiobacillus-ferrooxidans	26
visualization	26
ecological-interaction	25
population-dynamics	25
trophic-level	25
16s-rrna	24
microorganism	24
predator-prey	24
complexity	23
biodiversity	22
microbiology	22
thiobacillus	22
biooxidation	21
escherichia-coli	21
gene-expression	21
iron	21
microcosm	21
network	21
scale	21
simulation	21
community	19
human-microbiology	19
microarray	18
population-structure	18
competition	17
pyrite	17
selection	17
tree-of-life	17
acidophile	16
coexistence	16
ecoclassics	16
metabolism	16
redox	16
x-models	16
annotation	15
leptospirillum	15
productivity	15
speciation	15
assembly	14
classification	14
microbial-genomics	14
adaptation	13
clustering	13
diversity-stability	13
ecological-statistics	13
leptospirillum-ferrooxidans	13
regulation	13
comparative-metagenomics	12
x-amd-model-params	12
biogeochemistry	11
delong-lab	11
marine-ecosystem	11
mutualism	11
principal-components-analysis	11
sequence-alignment	11
sulfur	11
x-bioinf-software	11
z-paper-quals-modelling-proposal	11
bayesian	10
parameters	10
rrna	10
systems-biology	10
454-sequencing	9
coevolution	9
connectance	9
environment	9
environmental-public-health	9
ferroplasma	9
growth	9
hgt-mosaic-genome	9
individual-based-model	9
model-discrimination	9
r	9
soil	9
x-biofilm	9
x-diversity-stability	9
x-fer2-strains	9
x-ib-153-papers	9
canonical-correlation-analysis	8
control	8
density-dependence	8
disturbance	8
experimental-design	8
fluorescent-in-situ-hybridization	8
model-fitting	8
second-generation-sequencing	8
sequence-assembly	8
sequencing	8
x-microbial-species	8
x-microcosm	8
x-recomb-frequency	8
x-stability	8
z-paper-strainer	8
climate-change	7
community-composition	7
diversity-heterogeneity	7
gene-flow	7
metabolic-control-analysis	7
recombination-divergence	7
software-library	7
x-exp-design	7
z-class-evoeco	7
chaos	6
confocal-laser-microscopy	6
evolution-experiment	6
gos	6
growth-rate	6
host-parasite	6
hydronephrosis	6
iron-mountain	6
model-validation	6
model-verification	6
niche	6
perturbation	6
phylogenetic-tree	6
population	6
pyrosequencing	6
quasispecies	6
sp-nov	6
sulfate-reducing-bacteria	6
system	6
transcriptomics	6
x-community-structure	6
x-evolutionary-ecology	6
x-individual-based-model	6
x-mca-tca	6
alternative-stable-states	5
dynamics	5
epidemiology	5
gen-nov	5
geomicrobiology	5
gradient	5
heterogeneity	5
metagenomics	5
metapopulation	5
mutation-rate	5
nitrogen	5
parameter-estimation	5
persistence	5
population-growth	5
recombination-detection	5
review	5
significance	5
succession	5
thermodynamics	5
validation	5
x-coalescence-model	5
x-nonequilibrium	5
x-recomb-evidence	5
x-recombination-detection	5
biofilm-ecology	4
bioremediation	4
cladistic-analysis	4
comparative-ecology	4
economics-ecology	4
evolutionary-ecology	4
extremophile	4
ferroplasma-acidarmanus	4
ferroplasma-acidiphilum	4
freshwater-ecology	4
general-equivalence-theorem	4
group-selection	4
habitat	4
hgt-detection-software	4
intercellular-communication	4
invasive-species	4
metabolic-network	4
metaproteomics	4
microbial-genetics	4
model-selection	4
network-structure	4
nitrogen-fixation	4
oxidation	4
phylogeny	4
prochlorococcus	4
quorum-sensing	4
sequence-clusters	4
spatial-scale	4
station-aloha	4
statistical-model	4
sulfate-reduction	4
thermophile	4
t-optimum	4
variability	4
x-biofilm-ecology	4
x-genomics	4
x-multiple-stable-states	4
x-oxidation-models	4
bacillus	3
biofilm-structure	3
cellular-automaton	3
consortia	3
cooperation	3
diffusion	3
diversity-productivity	3
economics	3
extinction	3
hgt-archaea	3
information-techonology	3
interaction-strength	3
metagenomics-binning	3
microbial-interaction	3
microbial-populations	3
mitochondrial-dna	3
multi-variable	3
neural-network	3
neutral-model	3
nutrient-enrichment	3
optimal-design	3
parallel-processing	3
pcr	3
phage	3
primary-production	3
proteins	3
recombination-rrna	3
resource	3
response-surface	3
sampling	3
scaling	3
sexual-reproduction	3
spatial-pattern	3
species-area-relationship	3
stochastic	3
sustainability	3
x-community-gene-expression	3
x-disturbance	3
x-espm	3
x-iron-mountain-mine	3
x-marine-nitrogen	3
x-oscillations	3
abundance	2
biofilm-formation	2
blast	2
canonical-discriminant-analysis	2
cellular-differentiation	2
chemolithoautotroph	2
community-metabolism	2
community-stability	2
communtiy-genomics	2
compute-clusters	2
conservation	2
correlation	2
correlative-coherence	2
differential-equation	2
dispersal	2
diversity-gradient	2
ecosystem-health	2
ecosystem-size	2
electron-transfer	2
envvironmetal-heterogeneity	2
eukaryote	2
exopolysaccharide	2
feedback	2
fisher	2
flux-analysis	2
fosmid-libraries	2
functional-genomics	2
functional-response	2
function-prediction	2
fundamental-concepts-in-genetics	2
fuzzy-logic	2
generalist	2
genomic-islands	2
geochemical-cycles	2
habitat-fragmentation	2
habitat-heterogeneity	2
hgt-mechanism	2
hmm	2
hyperthermophile	2
internet	2
intestinal-fauna	2
iron-reduction	2
marine-ecology	2
maximum-likelihood	2
microbial-biomass	2
mlst	2
nested-clade-analysis	2
neutral-mutation-hypothesis	2
niche-construction	2
nitrogen-uptake	2
noise	2
nonequilibrium-thermodynamics	2
oscillations	2
oxidoreductase	2
perturbation-experiments	2
ph	2
physics	2
population-divergence	2
population-model	2
probiotics	2
public-health	2
python	2
ratio-dependence	2
recombination-mechanism	2
reduction	2
sar11	2
seasonal-variation	2
sequencing-bias	2
shotgun-sequencing	2
single-nucleotide-polymorphisms	2
snp	2
specialist-generalist	2
sulfolobus	2
sulfur-oxidation	2
symbiosis	2
synteny	2
synthetic-biology	2
tandem-mass-spectrometry	2
temporal-scale	2
temporal-variation	2
thermoplasma	2
thermoplasma-acidophilum	2
thiobacillus-caldus	2
threshold	2
toxic-metal	2
transcriptome	2
transposons	2
x-community-genomics	2
x-microbial-diversity	2
z-paper-quals-proposal	2
acidiphilium	1
adaptive-surface	1
aerobic-biofilms	1
algorithm	1
aligment	1
alignment	1
allee-effect	1
allelopathy	1
amplification	1
anaerobic-bacteria	1
ants	1
aquatic-ecosystem	1
atpase	1
autocorrelation	1
automated-image-analysis	1
bacteriophage	1
base-calling	1
biocontrol	1
biofuels	1
bioreactors	1
biosphere	1
biplot	1
c	1
cdna	1
chemotaxis	1
chimerism	1
cladogenesis	1
cloud-computing	1
coaggregation	1
codon-usage	1
collaboration	1
community-matrix	1
community-microbiology	1
complex-system-dynamics	1
contact-process	1
convergent-evolgution	1
cosmology	1
covariance-effect	1
covariation	1
crispr	1
culture	1
cytochrom	1
data-sharing	1
developmental-biology	1
directional-selection	1
discrete-time	1
dissolved-oxygen-concentration	1
distance-measures	1
distributed-computing	1
distributed-control	1
dna	1
ecological-communities	1
ecological-systems	1
effective-population-size	1
einstein	1
empirical-evidence	1
endosymbiosis	1
epigenetics	1
eutrophication	1
evolution-and-sex	1
evolutionary-stable-strategy	1
evolution-of-sex	1
evoultion	1
exploratory-experimentation	1
exponential-fitting	1
ferriphilum	1
file-format	1
forecasting	1
game-theory	1
gene-frequency	1
gene-interaction	1
gene-order	1
general-relativity	1
gene-regulation	1
genetic-correlation	1
genetic-diversity	1
genetic-drift	1
gpu	1
gut-microbes	1
habitat-change	1
habitat-destruction	1
halorubrum	1
hermaphrodite	1
hot-aloha	1
hypercycles	1
hypothesis-testing	1
incomplete-data	1
indicator-species	1
indirect-effects	1
in-situ-detection	1
intermediate-disturbance-hypothesis	1
island-biogeography	1
kegg	1
keystone-species	1
kin-selection	1
k-selection	1
laboratory	1
low-oxygen	1
management	1
mass-spectrometry	1
mass-transfer	1
mechanistic-model	1
metabolic-pathways	1
metal-organic-complexes	1
metal-reduction	1
methylation	1
microbes	1
microbial-ecosytems	1
microbially-influenced-corrosion	1
mismatch-repair	1
mitrogen	1
molecular-mechanismms	1
monte-carlo-estimation	1
mrna	1
mutation	1
natural-communities	1
natural-selection	1
neisseria	1
nifh	1
non-coding-dna	1
nonlinear-spline-model	1
novel-gene	1
null-model	1
nutrient-starvation	1
nutrient-uptake	1
omz	1
origin-of-life	1
origin-of-replication	1
overcrowding-effect	1
partial-differential-equations	1
partially-specified-model	1
pathway-analysis	1
perl	1
phenotypic-plasticity	1
phlogenetics	1
phlogenetic-tree	1
phosphorus	1
phylogenies	1
phylogenitics	1
phylogeography	1
phynotypic-plasticity	1
plankton	1
population-ecology	1
prisoners-dilemma	1
punctuation	1
purification	1
qualitative	1
radio-observations	1
reaction-kinetics	1
recruitment	1
regression	1
resampling	1
rescue-effect	1
resilience	1
rhodopsin	1
sability	1
sampling_bias	1
saturation	1
scientific-method	1
seed	1
self-organization	1
semi-mechanistic-model	1
semiparametric-model	1
sensitivity-analysis	1
sequence-visualization	1
sequencing-error	1
shake-flask	1
short-reads	1
signalling	1
signal-transduction	1
single-cell-sequencing	1
small-rna	1
small-world	1
small-world-network	1
sociobiology	1
space-time-continuum	1
spatial-dynamics	1
special-relativity	1
species-distribution	1
spline	1
stabilizing-selection	1
stabillity	1
stable-isotope-tagging	1
staistical-analysis	1
stoichiometry	1
stress-resistance	1
sulfite-reductase	1
sulfolobales	1
sup05	1
superspreader	1
switching-model	1
synechoccus	1
systematic-formulation	1
technology	1
temperature	1
terminology	1
thermotoga	1
thiooxidans	1
topology	1
tree-balance	1
tree-symmetry	1
trpohic-control-analysis	1
uce	1
variable-population	1
vertebrate	1
web-service	1
wright	1
x-evolutionary-ecoloty	1
x-intra-species-diversity	1
x-microarray	1
x-models-generic	1
x-recomb-mechanism	1
x-spatial-scale	1
yield-effort-curve	1
z-talk-mgsem	1

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