jmeppley's genomics [51 articles] Export

Recent papers added to jmeppley's library classified by the tag genomics. You can also see everyone's genomics.

	Genomics made easier: An introductory tutorial to genome datamining [My Copy] Genomics, Vol. 93, No. 3. (4 March 2009), pp. 187-195. by Peter Schattner posted to genomics by jmeppley on 2009-06-30 16:14:43 as along with 6 people n00c Thaverkamp druvus dullhunk idonaldson guhjy
	Measure of synonymous codon usage diversity among genes in bacteria [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 167. by Haruo Suzuki, Rintaro Saito, Masaru Tomita posted to codon-usage genomics microbiology by jmeppley on 2009-06-02 17:05:24 as along with 3 people codonusage michaelbarton dokky
	Environmental sequence data from the Sargasso Sea reveal that the characteristics of genome reduction in Prochlorococcus are not a harbinger for an escalation in genetic drift. [My Copy] Molecular biology and evolution (8 October 2008) by Jinghua Hu, Jeffrey L L. Blanchard posted to community-genomics genomics prochlorococcus by jmeppley on 2009-04-21 20:16:58 as along with 4 people and 1 group jlgreen Thaverkamp wasmith75 operon iSEEM
	KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1470-1471. by Jitao David D. Zhang, Stefan Wiemann posted to annotation bioinformatics genomics kegg software software-library visualization by jmeppley on 2009-03-31 21:40:31 as along with 16 people jfr Thaverkamp daforerog Vincent_Rouilly kiara coela guhjy dolchan neils VGreiff nuin chrisamiller renatomilani natstreet phoenixzxl druvus
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to genomics visualization by jmeppley on 2009-03-31 21:33:48 as along with 14 people and 1 group jfr jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann idonaldson rdiaz paszkows BergmanLab
	Geographical structure and differential natural selection among North European populations. [My Copy] Genome research, Vol. 19, No. 5. (5 May 2009), pp. 804-814. by B. P. McEvoy, G. W. Montgomery, A. F. McRae, et al.S. Ripatti, M. Perola, T. D. Spector, L. Cherkas, K. R. Ahmadi, D. Boomsma, G. Willemsen, J. J. Hottenga, N. L. Pedersen, P. K. Magnusson, K. O. Kyvik, K. Christensen, J. Kaprio, K. Heikkilä, A. Palotie, E. Widen, J. Muilu, A. C. Syvänen, U. Liljedahl, O. Hardiman, S. Cronin, L. Peltonen, N. G. Martin, P. M. Visscher posted to genomics population-genetics selection by jmeppley on 2009-03-15 00:42:32 as along with 4 people djkt xingxu dbensasson Terkko
	Quantitative Measures for the Management and Comparison of Annotated Genomes [My Copy] BMC Bioinformatics, Vol. 10 (23 February 2009), 67. by Karen, Mark Yandell posted to annotation genomics by jmeppley on 2009-03-05 14:16:58 as along with 3 people and 1 group timflutre stajich druvus Mycology
	AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 5. (1 March 2009), pp. 662-663. by Olivier Martin, Armand Valsesia, Amalio Telenti, Ioannis Xenarios, Brian J. Stevenson posted to bioinformatics genomics software visualization by jmeppley on 2009-01-27 19:46:41 as along with 6 people rdiaz nuin ilyashl guhjy pkonings daforerog
	GenomeGraphs: integrated genomic data visualization with R. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Steffen Durinck, James Bullard, Paul T. Spellman, Sandrine Dudoit posted to annotation genomics r software software-library statistics by jmeppley on 2009-01-06 18:21:04 as along with 18 people and 1 group operon daforerog klo psique rdiaz guhjy nuin lptolik thomaskelder pkonings natstreet polivares Zephyrus druvus barriot cisevol neils GeeSharpMinor BergmanLab
	A Standard MIGS/MIMS Compliant XML Schema: Toward the Development of the Genomic Contextual Data Markup Language (GCDML) [My Copy] OMICS: A Journal of Integrative Biology, Vol. 12, No. 2. (2008), pp. 115-121. by Renzo Kottmann, Tanya Gray, Sean Murphy, et al.Leonid Kagan, Saul Kravitz, Thierry Lombardot, Dawn Field, Frank O. Glockner posted to bioinformatics genomics software by jmeppley on 2008-09-05 13:30:24 as along with 2 people idoerg sconlan
	Toward a standards-compliant genomic and metagenomic publication record. [My Copy] Omics : a journal of integrative biology, Vol. 12, No. 2. (June 2008), pp. 157-160. by G. M. Garrity, D. Field, N. Kyrpides, et al.L. Hirschman, S. A. Sansone, S. Angiuoli, J. R. Cole, F. O. Glöckner, E. Kolker, G. Kowalchuk, M. A. Moran, D. Ussery, O. White posted to genomics bioinformatics by jmeppley on 2008-09-02 02:37:23 as
	The minimum information about a genome sequence (MIGS) specification. [My Copy] Nature biotechnology, Vol. 26, No. 5. (08 May 2008), pp. 541-547. by Dawn Field, George Garrity, Tanya Gray, et al.Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Claude DePamphilis, Robert Edwards, Nadeem Faruque, Robert Feldman, Jack Gilbert, Paul Gilna, Frank Oliver O. Glöckner, Philip Goldstein, Robert Guralnick, Dan Haft, David Hancock, Henning Hermjakob, Christiane Hertz-Fowler, Phil Hugenholtz, Ian Joint, Leonid Kagan, Matthew Kane, Jessie Kennedy, George Kowalchuk, Renzo Kottmann, Eugene Kolker, Saul Kravitz, Nikos Kyrpides, Jim Leebens-Mack, Suzanna E. Lewis, Kelvin Li, Allyson L. Lister, Phillip Lord, Natalia Maltsev, Victor Markowitz, Jennifer Martiny, Barbara Methe, Ilene Mizrachi, Richard Moxon, Karen Nelson, Julian Parkhill, Lita Proctor, Owen White, Susanna-Assunta A. Sansone, Andrew Spiers, Robert Stevens, Paul Swift, Chris Taylor, Yoshio Tateno, Adrian Tett, Sarah Turner, David Ussery, Bob Vaughan, Naomi Ward, Trish Whetzel, Ingio San Gil, Gareth Wilson, Anil Wipat posted to genomics software bioinformatics by jmeppley on 2008-09-02 02:36:44 as along with 14 people and 1 group barriot balajis thegoose2 idoerg Thaverkamp sconlan Katje allysonlister dullhunk guhjy tharris jamselem neils jfr microbiology_nijmegen
	PALEONTOLOGY: New Tricks with Old Bones [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 211-212. by Rachel Mackelprang, Edward M. Rubin posted to amplification genomics by jmeppley on 2008-07-17 14:53:17 as along with 1 person balicea
	Integrated data analysis for genome-wide research. [My Copy] EXS, Vol. 97 (2007), pp. 309-329. by M. Steinfath, D. Repsilber, M. Scholz, D. Walther, J. Selbig posted to comparative-genomics genomics statistics by jmeppley on 2008-05-14 18:15:46 as along with 1 person lh1
	Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3787-3793. by Xizeng Mao, Tao Cai, Liping Wei posted to annotation bioinformatics genomics software by jmeppley on 2008-04-30 19:26:05 as along with 1 person dullhunk
	Ecological annotation of genes and genomes through ecological genomics [My Copy] Molecular Ecology, Vol. 16, No. 21. (November 2007), pp. 4419-4421. by Christian R. Landry, Nadia Aubin-Horth posted to ecology functional-genomics function-prediction genomics by jmeppley on 2008-04-09 13:39:41 as along with 2 people yife aubinhon
	Dinucleotide relative abundance extremes: a genomic signature [My Copy] Trends in Genetics, Vol. 11, No. 7. (July 1995), pp. 283-290. by Samuel Kariin, Chris Burge posted to genomics microbial-species by jmeppley on 2008-04-04 13:26:58 as along with 2 people azazello karfunkel
	eggNOG: automated construction and annotation of orthologous groups of genes. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (16 January 2008), gkm796. by Lars Juhl J. Jensen, Philippe Julien, Michael Kuhn, et al.Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork posted to clustering genomics by jmeppley on 2007-10-24 22:58:40 as along with 8 people sjcockell yas johanviklund guhjy maximilianh Thaverkamp hplatero larsjuhljensen
	Viral Evolution in the Genomic Age [My Copy] PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278. by Edward C. Holmes posted to evolution genomics by jmeppley on 2007-10-16 04:00:37 as
	Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland [My Copy] Science, Vol. 317, No. 5834. (6 July 2007), pp. 111-114. by Eske Willerslev, Enrico Cappellini, Wouter Boomsma, et al.Rasmus Nielsen, Martin B. Hebsgaard, Tina B. Brand, Michael Hofreiter, Michael Bunce, Hendrik N. Poinar, Dorthe Dahl-Jensen, Sigfus Johnsen, Jorgen P. Steffensen, Ole Bennike, Jean-Luc Schwenninger, Roger Nathan, Simon Armitage, Cees-Jan de Hoog, Vasily Alfimov, Marcus Christl, Juerg Beer, Raimund Muscheler, Joel Barker, Martin Sharp, Kirsty E. Penkman, James Haile, Pierre Taberlet, Gilbert, Antonella Casoli, Elisa Campani, Matthew J. Collins posted to genomics by jmeppley on 2007-07-06 13:45:16 as along with 1 person dchughes
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454-sequencing community-genomics genetics genomics sequencing by jmeppley on 2007-03-05 18:22:04 as along with 38 people and 5 groups n00c rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Genomic and Metabolic Studies of the Impact of Probiotics on a Model Gut Symbiont and Host [My Copy] PLoS Biology, Vol. 4, No. 12. (1 December 2006), e413. by Justin L. Sonnenburg, Christina T. Chen, Jeffrey I. Gordon posted to genomics human-microbiology probiotics by jmeppley on 2006-12-13 18:11:13 as along with 1 person aswin
	Ecological Genomics [My Copy] Annual Review of Ecology, Evolution, and Systematics, Vol. 38, No. 1. (2007) by John Colbourne posted to ecology genomics by jmeppley on 2006-10-15 18:37:42 as
	Insights into extreme thermoacidophily based on genome analysis of Picrophilus torridus and other thermoacidophilic archaea [My Copy] Journal of Biotechnology In Aspects of Prokaryotic Genome Research, Vol. 126, No. 1. (20 October 2006), pp. 3-10. by A. Angelov, W. Liebl posted to acidophile archaea extremophile genomics horizontal-gene-transfer by jmeppley on 2006-09-29 17:09:27 as along with 1 person aangelo
	Translation control: bridging the gap between genomics and proteomics? [My Copy] Trends Biochem Sci, Vol. 26, No. 4. (April 2001), pp. 225-229. by B. Pradet-Balade, F. Boulmé, H. Beug, E. W. Müllner, J. A. Garcia-Sanz posted to genomics microarray proteomics by jmeppley on 2006-08-18 03:06:11 as
	Where there's muck there's microbes [My Copy] Nature Reviews Microbiology, Vol. 4, No. 9. (2006), pp. 646-647. by Helena Seth-Smith, Stephen Bentley posted to genomics microbial-ecology microbiology by jmeppley on 2006-08-16 19:24:24 as
	The genomic code: inferring Vibrionaceae niche specialization [My Copy] Nature Reviews Microbiology, Vol. 4, No. 9. (07 August 2006), pp. 697-704. by Jerry F. Reen, Salvador Almagro-Moreno, David Ussery, Fidelma E. Boyd posted to genomics microbial-community microbial-diversity microbial-ecology niche by jmeppley on 2006-08-16 19:23:41 as along with 1 person skembel
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to assembly genomics software z-paper-fer1-fer2-species by jmeppley on 2006-08-09 03:12:00 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Genomic Islands and the Ecology and Evolution of Prochlorococcus [My Copy] Science, Vol. 311, No. 5768. (24 March 2006), pp. 1768-1770. by Maureen L. Coleman, Matthew B. Sullivan, Adam C. Martiny, et al.Claudia Steglich, Kerrie Barry, Edward F. DeLong, Sallie W. Chisholm posted to ecology evolution genomics microbial-species prochlorococcus z-paper-fer1-fer2-species by jmeppley on 2006-08-03 22:21:29 as along with 8 people and 4 groups hwright Stenuite michC bluto jdelcampo cckan beatrizfernandez jlgreen African_Lakes_Limnology Microbial-Ecology Green Lab iSEEM
	Caryoscope: an Open Source Java application for viewing microarray data in a genomic context. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (15 October 2004) by I. A. Awad, C. A. Rees, T. Hernandez-Boussard, C. A. Ball, G. Sherlock posted to genomics microarray software x-bioinf-software by jmeppley on 2006-07-11 00:20:50 as along with 1 person and 1 group macowell BUiGEM
	Comparative Genomic Analysis of Archaeal Genotypic Variants in a Single Population and in Two Different Oceanic Provinces [My Copy] Appl. Environ. Microbiol., Vol. 68, No. 1. (1 January 2002), pp. 335-345. by Oded Beja, Eugene V. Koonin, L. Aravind, et al.Lance T. Taylor, Heidi Seitz, Jefferey L. Stein, Daniel C. Bensen, Robert A. Feldman, Ronald V. Swanson, Edward F. Delong posted to community-genomics comparative-genomics diversity genomics microbial-genomics variability by jmeppley on 2006-07-05 17:50:08 as
	Comparative Metagenomics of Microbial Communities [My Copy] Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557. by Susannah G. Tringe, Christian von Mering, Arthur Kobayashi, et al.Asaf A. Salamov, Kevin Chen, Hwai W. Chang, Mircea Podar, Jay M. Short, Eric J. Mathur, John C. Detter, Peer Bork, Philip Hugenholtz, Edward M. Rubin posted to community-genomics genomics microbial-genomics z-paper-fer1-fer2-species by jmeppley on 2006-06-19 05:40:20 as along with 18 people and 5 groups hwright skembel Thaverkamp Scis0000002 idoerg jbhiatt kozo-ni AaronDarling azazello wenhan sgoetz bluto vrich sanchezbuelna mcox mjetten jlgreen djkt Microbial-Ecology anammox microbiology_nijmegen Green Lab iSEEM
	Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. [My Copy] Genetics, Vol. 123, No. 3. (November 1989), pp. 585-595. by F. Tajima posted to genetics genomics neutral-mutation-hypothesis by jmeppley on 2006-03-23 22:46:34 as
	Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA. [My Copy] Science (20 December 2005) by Hendrik N N. Poinar, Carsten Schwarz, Ji Qi, et al.Beth Shapiro, Ross D E D. Macphee, Bernard Buigues, Alexei Tikhonov, Daniel Huson, Lynn P P. Tomsho, Alexander Auch, Markus Rampp, Webb Miller, Stephan C C. Schuster posted to community-genomics evolution genomics by jmeppley on 2006-01-31 20:25:56 as along with 4 people usagi-kirin jbhiatt balajis carpi
	Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands [My Copy] PLoS Genetics, Vol. 1, No. 5. (2005) by William W. L. Hsiao, Korine Ung, Dana Aeschliman, Jenny Bryan, Brett B. Finlay, Fiona S. L. Brinkman posted to genomics horizontal-gene-transfer novel-gene by jmeppley on 2005-12-16 16:15:03 as
	Insights on biology and evolution from microbial genome sequencing [My Copy] Genome Research, Vol. 15, No. 12. (1 December 2005), pp. 1603-1610. by Claire M. Fraser-Liggett posted to community-genomics comparative-genomics evolution genomics horizontal-gene-transfer microbial-diversity microbial-genomics by jmeppley on 2005-12-16 06:19:43 as along with 3 people katholt Retchless operon
	Combining microarray and genomic data to predict DNA binding motifs. [My Copy] Microbiology, Vol. 151, No. Pt 10. (October 2005), pp. 3197-3213. by L. Mao, C. Mackenzie, J. H. Roh, J. M. Eraso, S. Kaplan, H. Resat posted to genomics microarray regulation by jmeppley on 2005-11-03 17:07:28 as
	Exploiting the genome: DNA motifs [My Copy] Nat Rev Micro, Vol. 3, No. 11. (November 2005), pp. 830-830. by David O'Connell posted to genomics microarray regulation by jmeppley on 2005-11-03 17:05:43 as
	SNPs in ecology, evolution and conservation [My Copy] Trends in Ecology & Evolution, Vol. 19, No. 4. (April 2004), pp. 208-216. by Phillip A. Morin, Gordon Luikart, Robert K. Wayne, The_snp_workshop_group posted to ecology evolution genetics genomics snp x-fer2-strains by jmeppley on 2005-10-31 16:02:38 as along with 2 people alonexiu sunye
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to genomics sequence-assembly x-fer2-strains by jmeppley on 2005-10-31 16:01:40 as along with 14 people and 2 groups aheilbut jengeldk n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. [My Copy] Appl Environ Microbiol, Vol. 70, No. 8. (August 2004), pp. 4831-4839. by E. Jaspers, J. Overmann posted to 16s-rrna bacteria diversity ecology genomics x-fer2-strains by jmeppley on 2005-10-31 15:52:56 as along with 1 person Stenuite
	Reconstructing the metabolic network of a bacterium from its genome. [My Copy] Trends in microbiology, Vol. 13, No. 11. (November 2005), pp. 550-558. by C. Francke, R. J. Siezen, B. Teusink posted to bacteria genomics metabolic-network metabolism by jmeppley on 2005-10-26 19:15:48 as along with 6 people and 2 groups neilswainston kuhn JeremyZucker gurkanbebek bsmagic shung Bioinformatics bioinplant
	The ring of life provides evidence for a genome fusion origin of eukaryotes [My Copy] Nature, Vol. 431, No. 7005. (2004), pp. 152-155. by Maria C. Rivera, James A. Lake posted to archaea bacteria genomics phylogenetics tree-of-life x-genomics by jmeppley on 2005-10-23 04:54:30 as along with 1 person tomhebbron
	CVTree: a phylogenetic tree reconstruction tool based on whole genomes. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004) by Ji Qi, Hong Luo, Bailin Hao posted to evolution genomics phylogenetics refworks-import software tree-of-life by jmeppley on 2005-10-04 23:56:48 as along with 1 person druvus
	Horizontal gene transfer and phylogenetics [My Copy] Current Opinion in Microbiology, Vol. 6, No. 5. (October 2003), pp. 498-505. by Herve Philippe, Christophe J. Douady posted to archaea classification comparative-genomics evolution genomics horizontal-gene-transfer microbial-genomics phylogenetics proteins sequence-alignment tree-of-life by jmeppley on 2005-10-04 23:44:45 as
	Phylogenomics of hyperthermophilic Archaea and Bacteria. [My Copy] Biochem Soc Trans, Vol. 32, No. Pt 2. (April 2004), pp. 175-178. by H. P. Klenk, M. Spitzer, T. Ochsenreiter, G. Fuellen posted to community-genomics evolution genomics phylogenetics thermophile tree-of-life by jmeppley on 2005-10-04 23:13:51 as
	Barriers to horizontal gene transfer by natural transformation in soil bacteria. [My Copy] APMIS Suppl, Vol. 84 (1998), pp. 77-84. by K. M. Nielsen posted to evolution genomics horizontal-gene-transfer microorganism by jmeppley on 2005-09-01 21:05:46 as
	Environmental genomics, the big picture? [My Copy] FEMS microbiology letters, Vol. 231, No. 2. (2004), pp. 153-158. by F. Rodriguez-Valera posted to archaea bacteria biodiversity community-genomics diversity evolution genomics horizontal-gene-transfer microorganism x-fer2-strains by jmeppley on 2005-08-31 18:42:19 as
	Arsenic resistance in the archaeon "Ferroplasma acidarmanus": new insights into the structure and evolution of the ars genes [My Copy] Extremophiles, Vol. 7, No. 2. (APR 2003), pp. 123-130. by T. M. Gihring, P. L. Bond, S. C. Peters, J. F. Banfield posted to acidophile atpase biooxidation escherichia-coli evolution ferroplasma ferroplasma-acidarmanus genomics iron-oxidation microorganism phylogenetics refworks-import by jmeppley on 2005-08-31 18:42:06 as
	Metagenomics: from acid mine to shining sea [My Copy] Environmental microbiology, Vol. 6, No. 6. (JUN 2004), pp. 543-545. by M. Y. Galperin posted to acid-mine-drainage community-genomics genomics x-fer2-strains by jmeppley on 2005-08-31 18:42:05 as

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refworks-import	173
community-genomics	134
ecology	124
model	120
evolution	117
software	96
horizontal-gene-transfer	91
diversity	83
microbial-ecology	72
bacteria	59
stability	57
genomics	51
bioinformatics	50
biofilm	48
food-web	48
microbial-diversity	48
ecosystem	47
z-paper-background	44
microbial-species	42
phylogenetics	42
statistics	40
genetics	39
population-genetics	39
community-structure	36
z-paper-fer1-fer2-species	35
acid-mine-drainage	34
marine-microbiology	34
recombination	34
comparative-genomics	32
microbial-community	31
iron-oxidation	30
community-ecology	29
hgt-detection	28
proteomics	28
archaea	26
kinetics	26
thiobacillus-ferrooxidans	26
visualization	26
ecological-interaction	25
population-dynamics	25
trophic-level	25
16s-rrna	24
microorganism	24
predator-prey	24
complexity	23
biodiversity	22
microbiology	22
thiobacillus	22
biooxidation	21
escherichia-coli	21
gene-expression	21
iron	21
microcosm	21
network	21
scale	21
simulation	21
community	19
human-microbiology	19
microarray	18
population-structure	18
competition	17
pyrite	17
selection	17
tree-of-life	17
acidophile	16
coexistence	16
ecoclassics	16
metabolism	16
redox	16
x-models	16
annotation	15
leptospirillum	15
productivity	15
speciation	15
assembly	14
classification	14
microbial-genomics	14
adaptation	13
clustering	13
diversity-stability	13
ecological-statistics	13
leptospirillum-ferrooxidans	13
regulation	13
comparative-metagenomics	12
x-amd-model-params	12
biogeochemistry	11
delong-lab	11
marine-ecosystem	11
mutualism	11
principal-components-analysis	11
sequence-alignment	11
sulfur	11
x-bioinf-software	11
z-paper-quals-modelling-proposal	11
bayesian	10
parameters	10
rrna	10
systems-biology	10
454-sequencing	9
coevolution	9
connectance	9
environment	9
environmental-public-health	9
ferroplasma	9
growth	9
hgt-mosaic-genome	9
individual-based-model	9
model-discrimination	9
r	9
soil	9
x-biofilm	9
x-diversity-stability	9
x-fer2-strains	9
x-ib-153-papers	9
canonical-correlation-analysis	8
control	8
density-dependence	8
disturbance	8
experimental-design	8
fluorescent-in-situ-hybridization	8
model-fitting	8
second-generation-sequencing	8
sequence-assembly	8
sequencing	8
x-microbial-species	8
x-microcosm	8
x-recomb-frequency	8
x-stability	8
z-paper-strainer	8
climate-change	7
community-composition	7
diversity-heterogeneity	7
gene-flow	7
metabolic-control-analysis	7
recombination-divergence	7
software-library	7
x-exp-design	7
z-class-evoeco	7
chaos	6
confocal-laser-microscopy	6
evolution-experiment	6
gos	6
growth-rate	6
host-parasite	6
hydronephrosis	6
iron-mountain	6
model-validation	6
model-verification	6
niche	6
perturbation	6
phylogenetic-tree	6
population	6
pyrosequencing	6
quasispecies	6
sp-nov	6
sulfate-reducing-bacteria	6
system	6
transcriptomics	6
x-community-structure	6
x-evolutionary-ecology	6
x-individual-based-model	6
x-mca-tca	6
alternative-stable-states	5
dynamics	5
epidemiology	5
gen-nov	5
geomicrobiology	5
gradient	5
heterogeneity	5
metagenomics	5
metapopulation	5
mutation-rate	5
nitrogen	5
parameter-estimation	5
persistence	5
population-growth	5
recombination-detection	5
review	5
significance	5
succession	5
thermodynamics	5
validation	5
x-coalescence-model	5
x-nonequilibrium	5
x-recomb-evidence	5
x-recombination-detection	5
biofilm-ecology	4
bioremediation	4
cladistic-analysis	4
comparative-ecology	4
economics-ecology	4
evolutionary-ecology	4
extremophile	4
ferroplasma-acidarmanus	4
ferroplasma-acidiphilum	4
freshwater-ecology	4
general-equivalence-theorem	4
group-selection	4
habitat	4
hgt-detection-software	4
intercellular-communication	4
invasive-species	4
metabolic-network	4
metaproteomics	4
microbial-genetics	4
model-selection	4
network-structure	4
nitrogen-fixation	4
oxidation	4
phylogeny	4
prochlorococcus	4
quorum-sensing	4
sequence-clusters	4
spatial-scale	4
station-aloha	4
statistical-model	4
sulfate-reduction	4
thermophile	4
t-optimum	4
variability	4
x-biofilm-ecology	4
x-genomics	4
x-multiple-stable-states	4
x-oxidation-models	4
bacillus	3
biofilm-structure	3
cellular-automaton	3
consortia	3
cooperation	3
diffusion	3
diversity-productivity	3
economics	3
extinction	3
hgt-archaea	3
information-techonology	3
interaction-strength	3
metagenomics-binning	3
microbial-interaction	3
microbial-populations	3
mitochondrial-dna	3
multi-variable	3
neural-network	3
neutral-model	3
nutrient-enrichment	3
optimal-design	3
parallel-processing	3
pcr	3
phage	3
primary-production	3
proteins	3
recombination-rrna	3
resource	3
response-surface	3
sampling	3
scaling	3
sexual-reproduction	3
spatial-pattern	3
species-area-relationship	3
stochastic	3
sustainability	3
x-community-gene-expression	3
x-disturbance	3
x-espm	3
x-iron-mountain-mine	3
x-marine-nitrogen	3
x-oscillations	3
abundance	2
biofilm-formation	2
blast	2
canonical-discriminant-analysis	2
cellular-differentiation	2
chemolithoautotroph	2
community-metabolism	2
community-stability	2
communtiy-genomics	2
compute-clusters	2
conservation	2
correlation	2
correlative-coherence	2
differential-equation	2
dispersal	2
diversity-gradient	2
ecosystem-health	2
ecosystem-size	2
electron-transfer	2
envvironmetal-heterogeneity	2
eukaryote	2
exopolysaccharide	2
feedback	2
fisher	2
flux-analysis	2
fosmid-libraries	2
functional-genomics	2
functional-response	2
function-prediction	2
fundamental-concepts-in-genetics	2
fuzzy-logic	2
generalist	2
genomic-islands	2
geochemical-cycles	2
habitat-fragmentation	2
habitat-heterogeneity	2
hgt-mechanism	2
hmm	2
hyperthermophile	2
internet	2
intestinal-fauna	2
iron-reduction	2
marine-ecology	2
maximum-likelihood	2
microbial-biomass	2
mlst	2
nested-clade-analysis	2
neutral-mutation-hypothesis	2
niche-construction	2
nitrogen-uptake	2
noise	2
nonequilibrium-thermodynamics	2
oscillations	2
oxidoreductase	2
perturbation-experiments	2
ph	2
physics	2
population-divergence	2
population-model	2
probiotics	2
public-health	2
python	2
ratio-dependence	2
recombination-mechanism	2
reduction	2
sar11	2
seasonal-variation	2
sequencing-bias	2
shotgun-sequencing	2
single-nucleotide-polymorphisms	2
snp	2
specialist-generalist	2
sulfolobus	2
sulfur-oxidation	2
symbiosis	2
synteny	2
synthetic-biology	2
tandem-mass-spectrometry	2
temporal-scale	2
temporal-variation	2
thermoplasma	2
thermoplasma-acidophilum	2
thiobacillus-caldus	2
threshold	2
toxic-metal	2
transcriptome	2
transposons	2
x-community-genomics	2
x-microbial-diversity	2
z-paper-quals-proposal	2
acidiphilium	1
adaptive-surface	1
aerobic-biofilms	1
algorithm	1
aligment	1
alignment	1
allee-effect	1
allelopathy	1
amplification	1
anaerobic-bacteria	1
ants	1
aquatic-ecosystem	1
atpase	1
autocorrelation	1
automated-image-analysis	1
bacteriophage	1
base-calling	1
biocontrol	1
biofuels	1
bioreactors	1
biosphere	1
biplot	1
c	1
cdna	1
chemotaxis	1
chimerism	1
cladogenesis	1
cloud-computing	1
coaggregation	1
codon-usage	1
collaboration	1
community-matrix	1
community-microbiology	1
complex-system-dynamics	1
contact-process	1
convergent-evolgution	1
cosmology	1
covariance-effect	1
covariation	1
crispr	1
culture	1
cytochrom	1
data-sharing	1
developmental-biology	1
directional-selection	1
discrete-time	1
dissolved-oxygen-concentration	1
distance-measures	1
distributed-computing	1
distributed-control	1
dna	1
ecological-communities	1
ecological-systems	1
effective-population-size	1
einstein	1
empirical-evidence	1
endosymbiosis	1
epigenetics	1
eutrophication	1
evolution-and-sex	1
evolutionary-stable-strategy	1
evolution-of-sex	1
evoultion	1
exploratory-experimentation	1
exponential-fitting	1
ferriphilum	1
file-format	1
forecasting	1
game-theory	1
gene-frequency	1
gene-interaction	1
gene-order	1
general-relativity	1
gene-regulation	1
genetic-correlation	1
genetic-diversity	1
genetic-drift	1
gpu	1
gut-microbes	1
habitat-change	1
habitat-destruction	1
halorubrum	1
hermaphrodite	1
hot-aloha	1
hypercycles	1
hypothesis-testing	1
incomplete-data	1
indicator-species	1
indirect-effects	1
in-situ-detection	1
intermediate-disturbance-hypothesis	1
island-biogeography	1
kegg	1
keystone-species	1
kin-selection	1
k-selection	1
laboratory	1
low-oxygen	1
management	1
mass-spectrometry	1
mass-transfer	1
mechanistic-model	1
metabolic-pathways	1
metal-organic-complexes	1
metal-reduction	1
methylation	1
microbes	1
microbial-ecosytems	1
microbially-influenced-corrosion	1
mismatch-repair	1
mitrogen	1
molecular-mechanismms	1
monte-carlo-estimation	1
mrna	1
mutation	1
natural-communities	1
natural-selection	1
neisseria	1
nifh	1
non-coding-dna	1
nonlinear-spline-model	1
novel-gene	1
null-model	1
nutrient-starvation	1
nutrient-uptake	1
omz	1
origin-of-life	1
origin-of-replication	1
overcrowding-effect	1
partial-differential-equations	1
partially-specified-model	1
pathway-analysis	1
perl	1
phenotypic-plasticity	1
phlogenetics	1
phlogenetic-tree	1
phosphorus	1
phylogenies	1
phylogenitics	1
phylogeography	1
phynotypic-plasticity	1
plankton	1
population-ecology	1
prisoners-dilemma	1
punctuation	1
purification	1
qualitative	1
radio-observations	1
reaction-kinetics	1
recruitment	1
regression	1
resampling	1
rescue-effect	1
resilience	1
rhodopsin	1
sability	1
sampling_bias	1
saturation	1
scientific-method	1
seed	1
self-organization	1
semi-mechanistic-model	1
semiparametric-model	1
sensitivity-analysis	1
sequence-visualization	1
sequencing-error	1
shake-flask	1
short-reads	1
signalling	1
signal-transduction	1
single-cell-sequencing	1
small-rna	1
small-world	1
small-world-network	1
sociobiology	1
space-time-continuum	1
spatial-dynamics	1
special-relativity	1
species-distribution	1
spline	1
stabilizing-selection	1
stabillity	1
stable-isotope-tagging	1
staistical-analysis	1
stoichiometry	1
stress-resistance	1
sulfite-reductase	1
sulfolobales	1
sup05	1
superspreader	1
switching-model	1
synechoccus	1
systematic-formulation	1
technology	1
temperature	1
terminology	1
thermotoga	1
thiooxidans	1
topology	1
tree-balance	1
tree-symmetry	1
trpohic-control-analysis	1
uce	1
variable-population	1
vertebrate	1
web-service	1
wright	1
x-evolutionary-ecoloty	1
x-intra-species-diversity	1
x-microarray	1
x-models-generic	1
x-recomb-mechanism	1
x-spatial-scale	1
yield-effort-curve	1
z-talk-mgsem	1

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