jmeppley's watchlist [more than 800 articles] Export

Recent papers matching jmeppley's watchlist criteria

	High Diversity of the Viral Community from an Antarctic Lake [My Copy] Science, Vol. 326, No. 5954. (6 November 2009), pp. 858-861. by Alberto Lopez-Bueno, Javier Tamames, David Velazquez, Andres Moya, Antonio Quesada, Antonio Alcami posted to virus metagenomics ecology community antarctic by neils on 2009-11-08 22:22:37 as along with 1 person hughitt1
	Bacterial Community Variation in Human Body Habitats Across Space and Time [My Copy] Science (5 November 2009), 1177486. by Elizabeth K. Costello, Christian L. Lauber, Micah Hamady, Noah Fierer, Jeffrey I. Gordon, Rob Knight posted to temporal_variability microflora microbiota microbiome human community_composition community_assembly biogeography bacterial_communities by sharpton to the group iSEEM on 2009-11-06 16:32:29 as along with 1 person skembel
	Wetlands and global climate change: the role of wetland restoration in a changing world [My Copy] Wetlands Ecology and Management by Kevin Erwin posted to wetlands restoration ecology by Lazowski on 2009-11-05 19:27:19 as along with 3 people irarum nkd1ttt iwagner
	The serial discontinuity concept: Extending the model to floodplain rivers [My Copy] Regulated Rivers: Research & Management, Vol. 10, No. 2-4. (1995), pp. 159-168. by J. V. Ward, J. A. Stanford posted to river limnology floodplain ecology by Lazowski on 2009-11-05 19:08:37 as along with 1 person iwagner
	Revisiting the serial discontinuity concept [My Copy] Regulated Rivers: Research & Management, Vol. 17, No. 4-5. (2001), pp. 303-310. by Jack A. Stanford, J. V. Ward posted to river limnology ecology by Lazowski on 2009-11-05 19:01:58 as along with 1 person iwagner
	What Is a Species, and What Is Not? [My Copy] Philosophy of Science, Vol. 63, No. 2. (1996), pp. 262-277. by Ernst Mayr posted to ecology by tg1w on 2009-11-05 12:32:20 as along with 1 person perezcarballo
	Distributions of Tree Comparison Metrics--Some New Results [My Copy] Syst Biol, Vol. 42, No. 2. (1 June 1993), pp. 126-141. by Mike A. Steel, David Penny posted to phylogenetics methods by skembel to the group iSEEM on 2009-11-04 19:13:37 as
	De novo computational prediction of non-coding RNA genes in prokaryotic genomes [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2897-2905. by Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu posted to rna microbes annotation by djkt to the group iSEEM on 2009-11-04 17:41:30 as along with 4 people and 1 group TRHvidsten jmcq ppgardne druvus Journal picks
	Statistical methods in spatial genetics [My Copy] Molecular Ecology, Vol. 9999, No. 9999. (2009) by T. Gilles Guillo, S. Raphaël Lebloi, N. Aurélie Coulo, Alain C. Frantz posted to review popgen ecology by djkt to the group iSEEM on 2009-11-04 16:21:33 as
	Coevolution of economic and ecological systems [My Copy] Journal of Evolutionary Economics, Vol. 18, No. 1. (1 February 2008), pp. 1-29. by Joëlle Noailly posted to economic ecology coevolution business by tomhebbron on 2009-11-03 20:05:25 as
	THE ECOLOGY AND GENETICS OF MICROBIAL DIVERSITY [My Copy] Annual Review of Microbiology, Vol. 58, No. 1. (2004), pp. 207-231. by Rees Kassen, Paul B. Rainey posted to model microbial genetics evolution ecology by tomhebbron on 2009-11-03 10:01:17 as along with 2 people aaltenburger rabu
	The Effect of Adaptive Anti-Predator Behavior on Exploitative Competition and Mutualism between Predators [My Copy] Oikos, Vol. 68, No. 3. (1993), pp. 549-559. by Hiroyuki Matsuda, Peter A. Abrams, Michio Hori posted to predation model food-web ecology antipredation by tomhebbron on 2009-11-03 07:03:05 as
	Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations [My Copy] Genome Biology, Vol. 10, No. 10. (22 October 2009), R118. by Tom Conrad, Andrew Joyce, M. Kenyon Applebee, et al.Christian Barrett, Bin Xie, Yuan Gao, Bernhard Palsson posted to mutation evolution bacteria by djkt to the group iSEEM on 2009-11-03 01:39:46 as along with 4 people venancio nzm operon druvus
	Genomic DNA k-mer spectra: models and modalities [My Copy] Genome Biology, Vol. 10, No. 10. (2009), R108. by Benny Chor, David Horn, Yaron Levy, Nick Goldman, Tim Massingham posted to mutation kmer genome cpg by djkt to the group iSEEM on 2009-11-03 01:38:20 as along with 3 people TRHvidsten medic0747 gjuggler
	A Novel Mechanism of Transposon-Mediated Gene Activation [My Copy] PLoS Genet, Vol. 5, No. 10. (16 October 2009), e1000689. by Zhongge Zhang, Milton H. Saier posted to repeats expression by djkt to the group iSEEM on 2009-11-02 19:02:57 as along with 1 person maren
	Windshield splatter analysis with the Galaxy metagenomic pipeline [My Copy] Genome Research, Vol. 19, No. 11. (9 November 2009), pp. 2144-2153. by Sergei Kosakovsky Pond, Samir Wadhawan, Francesca Chiaromonte, et al.Guruprasad Ananda, Wen-Yu Chung, James Taylor, Anton Nekrutenko posted to workflow metagenomics eukaryotes db by djkt to the group iSEEM on 2009-11-02 18:13:32 as along with 5 people operon neils idonaldson jgill kshameer
	A General Framework for Analyzing Sustainability of Social-Ecological Systems [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 419-422. by Elinor Ostrom posted to sustainable policy ecology climate by nurban on 2009-11-02 16:31:39 as along with 6 people and 4 groups ltitodem bosshogg jago ddahlem aidankeane lmlee UNFCCC climate_change CBD Convention on Biological Diversity biodiversity_conservation
	Regeneration traits are structuring phylogenetic diversity in cork oak (<i>Quercus suber</i>) woodlands [My Copy] Journal of Vegetation Science, Vol. 20, No. 6. (2009), pp. 1009-1015. by Manuel Coca, Juli G. Pausas posted to traits suber regeneration quercus_suber quercus phylogenetics phylodiversity mediterranean iberian_peninsula ecology diversity cork_oak by pausas on 2009-10-29 19:53:20 as
	Disintegration of the Ecological Community [My Copy] The American Naturalist, Vol. 172, No. 6. (1 December 2008), pp. 741-750. by Robert E. Ricklefs posted to temporal_scales species_richness regional_scales populations occurrence evolutionary_biology ecology ecological_community diversity_patterns coexistence assemblages by tkeitt on 2009-10-29 15:01:14 as along with 2 people drmarkandersen dhodkinson
	Advantages of Volunteer-Based Biodiversity Monitoring in Europe [My Copy] Conservation Biology, Vol. 23, No. 2. (2009), pp. 307-316. by Dirk S. Schmeller, Y. Pierre-Yves Henr, D. Romain Julliar, et al.R. Bernd Grube, T. Jean Clober, K. Frank Dzioc, L. Szabolcs Lengye, I. Piotr Nowick, I. Eszter Dér, S. Eduardas Budry, L. Tiiu Kul, I. Kadri Tal, H. Bianca Bauc, E. Josef Settel, Y. Chris van Swaa, R. Andrej Koble, J. Valerija Babi, U. Eva Papastergiado, E. Klaus Henl posted to monitoring ecology citizen-science by mmunson on 2009-10-29 08:30:26 as along with 2 people kaiserm eehardie
	Genome-scale approaches to resolving incongruence in molecular phylogenies [My Copy] Nature, Vol. 425, No. 6960. (23 October 2003), pp. 798-804. by Antonis Rokas, Barry L. Williams, Nicole King, Sean B. Carroll posted to phylogenetics incongruence genomes by skembel to the group iSEEM on 2009-10-28 20:32:38 as along with 7 people biomcgary nlapalu druvus knaseanka aprasad AaronDarling srfairclough
	Life and Death Play Out on the Skins of Frogs [My Copy] Science, Vol. 326, No. 5952. (23 October 2009), pp. 507-508. by Elizabeth Pennisi posted to ecology by dinnes on 2009-10-27 11:37:21 as along with 1 person dlizcano
	The Organizational Ecology of a Technological System [My Copy] Administrative Science Quarterly, Vol. 35, No. 1. (1990), pp. 31-60. by William P. Barnett posted to technological system organizational ecology by derchao on 2009-10-27 03:25:02 as
	A safe operating space for humanity [My Copy] Nature, Vol. 461, No. 7263. (23 September 2009), pp. 472-475. by Johan Rockstrom, Will Steffen, Kevin Noone, et al.Asa Persson, F. Stuart Chapin, Eric F. Lambin, Timothy M. Lenton, Marten Scheffer, Carl Folke, Hans J. Schellnhuber, Bjorn Nykvist, Cynthia A. de Wit, Terry Hughes, Sander van der Leeuw, Henning Rodhe, Sverker Sorlin, Peter K. Snyder, Robert Costanza, Uno Svedin, Malin Falkenmark, Louise Karlberg, Robert W. Corell, Victoria J. Fabry, James Hansen, Brian Walker, Diana Liverman, Katherine Richardson, Paul Crutzen, Jonathan A. Foley posted to water threshold sustainable species pollution phosphorus ozone nitrogen land-use impacts hydrology extinction environment ecosystem ecology climate aerosol acidification by nurban on 2009-10-26 18:06:05 as along with 5 people and 1 group lilith klauso ommachi kidwellj TRHvidsten 8_01
	The role of productivity in the ecological and evolutionary dynamics of predator-prey interaction [My Copy] (2009) by Ville-Petri Friman posted to predator_prey model evolution ecology dynamics by tomhebbron on 2009-10-26 16:35:32 as
	Steps towards an ecology of infrastructure: complex problems in design and access for large-scale collaborative systems [My Copy] In CSCW '94: Proceedings of the 1994 ACM conference on Computer supported cooperative work (1994), pp. 253-264. by Susan L. Star, Karen Ruhleder posted to knowledge_management infrastructure ecology collaboration by quantum10 on 2009-10-26 01:56:40 as along with 5 people and 2 groups nithya Mandre zemeigo ckelty jago Integrative Expertise for Global Health RFID deployment
	Evolution and ecology of influenza A viruses. [My Copy] Microbiol. Mol. Biol. Rev., Vol. 56, No. 1. (1 March 1992), pp. 152-179. by R. G. Webster, W. J. Bean, O. T. Gorman, T. M. Chambers, Y. Kawaoka posted to virus influenza evolution ecology disease by gonzalez on 2009-10-25 23:38:06 as along with 5 people seanyuan ggrassi lmichan friendpine ucdmary
	Noisy Clockwork: Time Series Analysis of Population Fluctuations in Animals [My Copy] Science, Vol. 293, No. 5530. (27 July 2001), pp. 638-643. by Ottar N. Bjornstad, Bryan T. Grenfell posted to time-series stochastic statistics population-dynamics nonlinear noise ecosystem ecology dynamics by nurban on 2009-10-25 20:42:13 as along with 1 person mullonc
	The Ghost of Competition Present [My Copy] The American Naturalist, Vol. 0, No. 0. (0000), pp. 000-000. by T. . E. Miller, C. . P. Terhorst, J. . H. Burns posted to ecology competition by klauso on 2009-10-23 12:39:14 as
	Ecological Models and Data in R [My Copy] (21 July 2008) by Benjamin M. Bolker posted to models ecology by klauso on 2009-10-23 12:37:06 as along with 5 people cwmccabe jarlet roodubh natstreet druvus
	What is microbial community ecology\|[quest]\| [My Copy] The ISME Journal, Vol. 3, No. 11. (06 August 2009), pp. 1223-1230. by Allan Konopka posted to review microbes metagenomics ecology community by djkt to the group iSEEM on 2009-10-22 22:42:13 as along with 1 person skembel
	An ecological and evolutionary perspective on humanâmicrobe mutualism and disease [My Copy] Nature, Vol. 449, No. 7164. (17 October 2007), pp. 811-818. by Les Dethlefsen, Margaret McFall-Ngai, David A. Relman posted to mutualism microbial_community microbe human ecology disease by tomhebbron on 2009-10-22 13:03:58 as along with 2 people and 1 group Zman bpcusack Fasting, food and evolution
	Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae) [My Copy] Biological Invasions, Vol. 11, No. 5. (1 May 2009), pp. 1159-1173. by M. Ainouche, P. Fortune, A. Salmon, et al.C. Parisod, M. A. Grandbastien, K. Fukunaga, M. Ricou, M. T. Misset posted to polyploidy hybridization ecology by echinotrix on 2009-10-22 09:24:12 as
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to sequencing review popgen by djkt to the group iSEEM on 2009-10-21 18:55:43 as along with 3 people skembel n00c natstreet
	Different gene regulation strategies revealed by analysis of binding motifs [My Copy] Trends in Genetics, Vol. 25, No. 10. (06 October 2009), pp. 434-440. by Zeba Wunderlich, Leonid A. Mirny posted to tf motif expression by djkt to the group iSEEM on 2009-10-21 18:50:54 as along with 2 people francemirko behindtherabbit
	Genome evolution and adaptation in a long-term experiment with Escherichia coli [My Copy] Nature, Vol. 461, No. 7268. (18 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong S. Yu, Sung H. Yoon, et al.Haeyoung Jeong, Tae K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to selection evolution bacteria by djkt to the group iSEEM on 2009-10-21 18:18:30 as along with 24 people and 3 groups jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese Pedro Martinez EvoDevo lab Barcelona Journal picks BergmanLab
	Host-Bacterial Mutualism in the Human Intestine [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1915-1920. by Fredrik Backhed, Ruth E. Ley, Justin L. Sonnenburg, Daniel A. Peterson, Jeffrey I. Gordon posted to mutualism microbial gut ecology commensal by tomhebbron on 2009-10-21 14:17:24 as along with 6 people and 1 group cmzmasek bentley guhjy Zephyrus nickluscombe wenhan EBI-regulation
	Application of sequence-based methods in human microbial ecology [My Copy] Genome Research, Vol. 16, No. 3. (1 March 2006), pp. 316-322. by Li Weng, Edward M. Rubin, James Bristow posted to symbiotic_bacteria symbiosis microbial_communities microbial human ecology by tomhebbron on 2009-10-21 13:58:05 as along with 1 person ryanraaum
	Small World Patterns in Food Webs [My Copy] Journal of Theoretical Biology, Vol. 214, No. 3. (07 February 2002), pp. 405-412. by Jose M. Montoya, Ricard V. Solé posted to topology small-world power-law network food-web ecology by tomhebbron on 2009-10-21 11:24:52 as along with 2 people muraken mague
	Urban ecology as an interdisciplinary field: differences in the use of “urban” between the social and natural sciences [My Copy] Urban Ecosystems, Vol. 4, No. 1. (1 January 2000), pp. 5-24. by N. E. Mcintyre, K. Knowles-Yánez, D. Hope posted to urban ecology by shirily on 2009-10-20 10:49:20 as along with 1 person and 1 group dekay23 Urban Ecology
	Global Biodiversity Scenarios for the Year 2100 [My Copy] Science, Vol. 287, No. 5459. (10 March 2000), pp. 1770-1774. by Osvaldo E. Sala, F. Stuart Chapin, Juan J. Armesto, et al.Eric Berlow, Janine Bloomfield, Rodolfo Dirzo, Elisabeth Huber-Sanwald, Laura F. Huenneke, Robert B. Jackson, Ann Kinzig, Rik Leemans, David M. Lodge, Harold A. Mooney, Martín Oesterheld, N. LeRoy Poff, Martin T. Sykes, Brian H. Walker, Marilyn Walker, Diana H. Wall posted to scenarios ecology conservation biodiversity by klauso on 2009-10-19 13:35:05 as along with 10 people and 3 groups kidwellj kaiserm phig mrobles Flit mbenito cmm ctronci gulsacan korhan biodiversity_conservation Global_biodiversity_model FAB-lab
	Simulation modelling of ecological hierarchies in constructive dynamical systems [My Copy] Ecological Complexity, Vol. 4, No. 1-2. (March 2007), pp. 13-25. by C. Ratze, F. Gillet, J. Muller, K. Stoffel posted to invasive_species hierarchy_theory hierarchical_organization ecology ecological_communities dynamical_system complex_adaptive_systems by ipetrus on 2009-10-18 00:30:18 as
	Competition and predation in simple food webs: intermediately strong trade-offs maximize coexistence. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 270, No. 1533. (22 December 2003), pp. 2591-2598. by Reinier HilleRisLambers, Ulf Dieckmann posted to species invasive_species invasive ecology ecological_communities by ipetrus on 2009-10-17 19:52:07 as
	Quantifying Variation in the Strengths of Species Interactions [My Copy] Ecology, Vol. 80, No. 7. (October 1999), 2206. by Eric L. Berlow, Sergio A. Navarrete, Cheryl J. Briggs, Mary E. Power, Bruce A. Menge posted to species invasive_species ecology ecological_communities by ipetrus on 2009-10-17 19:22:50 as
	Theoretical Concepts and Empirical Approaches to Measuring Interaction Strength [My Copy] Ecology, Vol. 79, No. 2. (March 1998), 461. by Mark S. Laska, J. Timothy Wootton posted to invasive_species ecology ecological_communities by ipetrus on 2009-10-17 17:21:05 as
	Community-wide distribution of predatorâprey interaction strength in kelp forests [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 6. (19 March 2002), pp. 3678-3683. by Enric Sala, Michael H. Graham posted to species predator_prey kelp_forests invasive_species invasive ecology ecological_communities by ipetrus on 2009-10-17 17:18:55 as
	Keystone species and vulnerable species in ecological communities: strong or weak interactors? [My Copy] Journal of Theoretical Biology, Vol. 235, No. 1. (07 July 2005), pp. 95-103. by M. Christianou, B. Ebenman posted to species invasive ecology by ipetrus on 2009-10-17 17:16:03 as
	Cost-benefit theory and optimal design of gene regulation functions. [My Copy] Physical biology, Vol. 4, No. 4. (November 2007), pp. 229-245. by Tomer Kalisky, Erez Dekel, Uri Alon posted to circuit evolution_circuit ecology alonu by yyfwuhan on 2009-10-16 21:38:07 as along with 1 person sb_journal_club
	Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 422-426. by Anne E. Dekas, Rachel S. Poretsky, Victoria J. Orphan posted to microbes environment community by djkt to the group iSEEM on 2009-10-16 06:27:37 as
	Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. [My Copy] The ISME journal, Vol. 3, No. 7. (02 April 2009), pp. 780-791. by Simone I. Boer, Stefanie I. C. Hedtkamp, Justus E. E. van Beusekom, Jed A. Fuhrman, Antje Boetius, Alban Ramette posted to janssand ecology by kinestetika on 2009-10-15 14:49:18 as along with 1 person and 1 group halinat Shared Literature Resource of the Microbial Fitness Group - MPI Bremen

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refworks-import	173
community-genomics	133
ecology	124
model	120
evolution	117
software	95
horizontal-gene-transfer	91
diversity	83
microbial-ecology	72
bacteria	59
stability	57
genomics	51
bioinformatics	49
biofilm	48
food-web	48
microbial-diversity	48
ecosystem	47
z-paper-background	44
microbial-species	42
phylogenetics	42
statistics	40
genetics	39
population-genetics	39
community-structure	36
z-paper-fer1-fer2-species	35
acid-mine-drainage	34
marine-microbiology	34
recombination	34
comparative-genomics	32
microbial-community	31
iron-oxidation	30
community-ecology	29
hgt-detection	28
proteomics	28
archaea	26
kinetics	26
thiobacillus-ferrooxidans	26
visualization	26
ecological-interaction	25
population-dynamics	25
trophic-level	25
16s-rrna	24
microorganism	24
predator-prey	24
complexity	23
biodiversity	22
microbiology	22
thiobacillus	22
biooxidation	21
escherichia-coli	21
gene-expression	21
iron	21
microcosm	21
network	21
scale	21
simulation	21
community	19
human-microbiology	19
microarray	18
population-structure	18
competition	17
pyrite	17
selection	17
tree-of-life	17
acidophile	16
coexistence	16
ecoclassics	16
metabolism	16
redox	16
x-models	16
annotation	15
leptospirillum	15
productivity	15
speciation	15
assembly	14
classification	14
microbial-genomics	14
adaptation	13
clustering	13
diversity-stability	13
ecological-statistics	13
leptospirillum-ferrooxidans	13
regulation	13
comparative-metagenomics	12
x-amd-model-params	12
biogeochemistry	11
delong-lab	11
marine-ecosystem	11
mutualism	11
principal-components-analysis	11
sequence-alignment	11
sulfur	11
x-bioinf-software	11
z-paper-quals-modelling-proposal	11
bayesian	10
parameters	10
rrna	10
systems-biology	10
454-sequencing	9
coevolution	9
connectance	9
environment	9
environmental-public-health	9
ferroplasma	9
growth	9
hgt-mosaic-genome	9
individual-based-model	9
model-discrimination	9
r	9
soil	9
x-biofilm	9
x-diversity-stability	9
x-fer2-strains	9
x-ib-153-papers	9
canonical-correlation-analysis	8
control	8
density-dependence	8
disturbance	8
experimental-design	8
fluorescent-in-situ-hybridization	8
model-fitting	8
second-generation-sequencing	8
sequence-assembly	8
sequencing	8
x-microbial-species	8
x-microcosm	8
x-recomb-frequency	8
x-stability	8
z-paper-strainer	8
climate-change	7
community-composition	7
diversity-heterogeneity	7
gene-flow	7
metabolic-control-analysis	7
recombination-divergence	7
software-library	7
x-exp-design	7
z-class-evoeco	7
chaos	6
confocal-laser-microscopy	6
evolution-experiment	6
gos	6
growth-rate	6
host-parasite	6
hydronephrosis	6
iron-mountain	6
model-validation	6
model-verification	6
niche	6
perturbation	6
phylogenetic-tree	6
population	6
pyrosequencing	6
quasispecies	6
sp-nov	6
sulfate-reducing-bacteria	6
system	6
transcriptomics	6
x-community-structure	6
x-evolutionary-ecology	6
x-individual-based-model	6
x-mca-tca	6
alternative-stable-states	5
dynamics	5
epidemiology	5
gen-nov	5
geomicrobiology	5
gradient	5
heterogeneity	5
metagenomics	5
metapopulation	5
mutation-rate	5
nitrogen	5
parameter-estimation	5
persistence	5
population-growth	5
recombination-detection	5
review	5
significance	5
succession	5
thermodynamics	5
validation	5
x-coalescence-model	5
x-nonequilibrium	5
x-recomb-evidence	5
x-recombination-detection	5
biofilm-ecology	4
bioremediation	4
cladistic-analysis	4
comparative-ecology	4
economics-ecology	4
evolutionary-ecology	4
extremophile	4
ferroplasma-acidarmanus	4
ferroplasma-acidiphilum	4
freshwater-ecology	4
general-equivalence-theorem	4
group-selection	4
habitat	4
hgt-detection-software	4
intercellular-communication	4
invasive-species	4
metabolic-network	4
metaproteomics	4
microbial-genetics	4
model-selection	4
network-structure	4
nitrogen-fixation	4
oxidation	4
phylogeny	4
prochlorococcus	4
quorum-sensing	4
sequence-clusters	4
spatial-scale	4
station-aloha	4
statistical-model	4
sulfate-reduction	4
thermophile	4
t-optimum	4
variability	4
x-biofilm-ecology	4
x-genomics	4
x-multiple-stable-states	4
x-oxidation-models	4
bacillus	3
biofilm-structure	3
cellular-automaton	3
consortia	3
cooperation	3
diffusion	3
diversity-productivity	3
economics	3
extinction	3
hgt-archaea	3
information-techonology	3
interaction-strength	3
metagenomics-binning	3
microbial-interaction	3
microbial-populations	3
mitochondrial-dna	3
multi-variable	3
neural-network	3
neutral-model	3
nutrient-enrichment	3
optimal-design	3
parallel-processing	3
pcr	3
phage	3
primary-production	3
proteins	3
recombination-rrna	3
resource	3
response-surface	3
sampling	3
scaling	3
sexual-reproduction	3
spatial-pattern	3
species-area-relationship	3
stochastic	3
sustainability	3
x-community-gene-expression	3
x-disturbance	3
x-espm	3
x-iron-mountain-mine	3
x-marine-nitrogen	3
x-oscillations	3
abundance	2
biofilm-formation	2
blast	2
canonical-discriminant-analysis	2
cellular-differentiation	2
chemolithoautotroph	2
community-metabolism	2
community-stability	2
communtiy-genomics	2
compute-clusters	2
conservation	2
correlation	2
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differential-equation	2
dispersal	2
diversity-gradient	2
ecosystem-health	2
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electron-transfer	2
envvironmetal-heterogeneity	2
eukaryote	2
exopolysaccharide	2
feedback	2
fisher	2
flux-analysis	2
fosmid-libraries	2
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function-prediction	2
fundamental-concepts-in-genetics	2
fuzzy-logic	2
generalist	2
genomic-islands	2
geochemical-cycles	2
habitat-fragmentation	2
habitat-heterogeneity	2
hgt-mechanism	2
hmm	2
hyperthermophile	2
internet	2
intestinal-fauna	2
iron-reduction	2
marine-ecology	2
maximum-likelihood	2
microbial-biomass	2
mlst	2
nested-clade-analysis	2
neutral-mutation-hypothesis	2
niche-construction	2
nitrogen-uptake	2
noise	2
nonequilibrium-thermodynamics	2
oscillations	2
oxidoreductase	2
perturbation-experiments	2
ph	2
physics	2
population-divergence	2
population-model	2
probiotics	2
public-health	2
python	2
ratio-dependence	2
recombination-mechanism	2
reduction	2
sar11	2
seasonal-variation	2
sequencing-bias	2
shotgun-sequencing	2
single-nucleotide-polymorphisms	2
snp	2
specialist-generalist	2
sulfolobus	2
sulfur-oxidation	2
symbiosis	2
synteny	2
synthetic-biology	2
tandem-mass-spectrometry	2
temporal-scale	2
temporal-variation	2
thermoplasma	2
thermoplasma-acidophilum	2
thiobacillus-caldus	2
threshold	2
toxic-metal	2
transcriptome	2
transposons	2
x-community-genomics	2
x-microbial-diversity	2
z-paper-quals-proposal	2
acidiphilium	1
adaptive-surface	1
aerobic-biofilms	1
algorithm	1
aligment	1
alignment	1
allee-effect	1
allelopathy	1
amplification	1
anaerobic-bacteria	1
ants	1
aquatic-ecosystem	1
atpase	1
autocorrelation	1
automated-image-analysis	1
bacteriophage	1
base-calling	1
biocontrol	1
biofuels	1
bioreactors	1
biosphere	1
biplot	1
c	1
cdna	1
chemotaxis	1
chimerism	1
cladogenesis	1
cloud-computing	1
coaggregation	1
codon-usage	1
collaboration	1
community-matrix	1
community-microbiology	1
complex-system-dynamics	1
contact-process	1
convergent-evolgution	1
cosmology	1
covariance-effect	1
covariation	1
crispr	1
culture	1
cytochrom	1
data-sharing	1
developmental-biology	1
directional-selection	1
discrete-time	1
dissolved-oxygen-concentration	1
distance-measures	1
distributed-computing	1
distributed-control	1
dna	1
ecological-communities	1
ecological-systems	1
effective-population-size	1
einstein	1
empirical-evidence	1
endosymbiosis	1
epigenetics	1
eutrophication	1
evolution-and-sex	1
evolutionary-stable-strategy	1
evolution-of-sex	1
evoultion	1
exploratory-experimentation	1
exponential-fitting	1
ferriphilum	1
file-format	1
forecasting	1
game-theory	1
gene-frequency	1
gene-interaction	1
gene-order	1
general-relativity	1
gene-regulation	1
genetic-correlation	1
genetic-diversity	1
genetic-drift	1
gpu	1
gut-microbes	1
habitat-change	1
habitat-destruction	1
halorubrum	1
hermaphrodite	1
hot-aloha	1
hypercycles	1
hypothesis-testing	1
incomplete-data	1
indicator-species	1
indirect-effects	1
in-situ-detection	1
intermediate-disturbance-hypothesis	1
island-biogeography	1
kegg	1
keystone-species	1
kin-selection	1
k-selection	1
laboratory	1
low-oxygen	1
management	1
mass-spectrometry	1
mass-transfer	1
mechanistic-model	1
metabolic-pathways	1
metal-organic-complexes	1
metal-reduction	1
methylation	1
microbes	1
microbial-ecosytems	1
microbially-influenced-corrosion	1
mismatch-repair	1
mitrogen	1
molecular-mechanismms	1
monte-carlo-estimation	1
mrna	1
mutation	1
natural-communities	1
natural-selection	1
neisseria	1
nifh	1
non-coding-dna	1
nonlinear-spline-model	1
novel-gene	1
null-model	1
nutrient-starvation	1
nutrient-uptake	1
omz	1
origin-of-life	1
origin-of-replication	1
overcrowding-effect	1
partial-differential-equations	1
partially-specified-model	1
pathway-analysis	1
perl	1
phenotypic-plasticity	1
phlogenetics	1
phlogenetic-tree	1
phosphorus	1
phylogenies	1
phylogenitics	1
phylogeography	1
phynotypic-plasticity	1
plankton	1
population-ecology	1
prisoners-dilemma	1
punctuation	1
purification	1
qualitative	1
radio-observations	1
reaction-kinetics	1
recruitment	1
regression	1
resampling	1
rescue-effect	1
resilience	1
rhodopsin	1
sability	1
sampling_bias	1
saturation	1
scientific-method	1
seed	1
self-organization	1
semi-mechanistic-model	1
semiparametric-model	1
sensitivity-analysis	1
sequence-visualization	1
sequencing-error	1
shake-flask	1
short-reads	1
signalling	1
signal-transduction	1
single-cell-sequencing	1
small-rna	1
small-world	1
small-world-network	1
sociobiology	1
space-time-continuum	1
spatial-dynamics	1
special-relativity	1
species-distribution	1
spline	1
stabilizing-selection	1
stabillity	1
stable-isotope-tagging	1
staistical-analysis	1
stoichiometry	1
stress-resistance	1
sulfite-reductase	1
sulfolobales	1
sup05	1
superspreader	1
switching-model	1
synechoccus	1
systematic-formulation	1
technology	1
temperature	1
terminology	1
thermotoga	1
thiooxidans	1
topology	1
tree-balance	1
tree-symmetry	1
trpohic-control-analysis	1
uce	1
variable-population	1
vertebrate	1
web-service	1
wright	1
x-evolutionary-ecoloty	1
x-intra-species-diversity	1
x-microarray	1
x-models-generic	1
x-recomb-mechanism	1
x-spatial-scale	1
yield-effort-curve	1
z-talk-mgsem	1

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