jmuhlich's library 47 articles Export

	'Omics Data Sharing [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 234-236. by Dawn Field, Susanna-Assunta Sansone, Amanda Collis, et al.Tim Booth, Peter Dukes, Susan K. Gregurick, Karen Kennedy, Patrik Kolar, Eugene Kolker, Mary Maxon, Sian Millard, Alexis-Michel Mugabushaka, Nicola Perrin, Jacques E. Remacle, Karin Remington, Philippe Rocca-Serra, Chris F. Taylor, Mark Thorley, Bela Tiwari, John Wilbanks posted to sbwiki ontology mi informatics by jmuhlich on 2009-10-23 18:54:46 as along with 10 people and 3 groups perkeo druvus dullhunk shigepong ppgardne reyez daforerog allysonlister applebyb jago Journal picks Integrative Expertise for Global Health Convention on Knowledge Commons
	Standards and ontologies in computational systems biology. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 211-222. by Herbert M. Sauro, Frank T. Bergmann posted to sbwiki sbml ontology miriam annotation by jmuhlich on 2009-10-21 19:16:06 as along with 2 people jonathancooper bertelsen
	Biological knowledge management: the emerging role of the Semantic Web technologies [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 392-407. by Erick Antezana, Martin Kuiper, Vladimir Mironov posted to semiotics semantic sbwiki ontology knowledge_management by jmuhlich on 2009-10-15 23:05:54 as along with 14 people guhjy artaban421 cmzmasek pharmdoc lmichan bertelsen kshameer sobolevnrm dansullivanblk allysonlister mikel_egana dullhunk fgibson druvus
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas L. Novere, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted to sbwiki sbml ontology model annotation by jmuhlich on 2009-09-09 23:53:12 as along with 16 people and 2 groups mtaschuk perkeo irenas bertelsen moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister michaelbarton subhacom dullhunk dagmar lenov pmendes leilaperie dIEMoSIRIS compneur
	Annotation of SBML Models Through Rule-Based Semantic Integration [My Copy] In The 12th Annual Bio-Ontologies Meeting, ISMB 2009 (28 June 2009), 49. by Allyson L. Lister, Phillip Lord, Matthew Pocock, Anil Wipat edited by Phillip Lord, Susanna-Assunta Sansone, Nigam Shah, Susie Stephens, Larisa Soldatova posted to sbwiki sbml ontology model informatics by jmuhlich on 2009-09-08 23:20:51 as along with 1 person allysonlister
	Opening, Closing Worlds - On Integrity Constraints [My Copy] In OWL: Experiences and Directions 2008 (26 October 2008) by Evren Sirin, Michael Smith, Evan Wallace edited by Catherine Dolbear, Alan Ruttenberg, Uli Sattler posted to semantic sbwiki ontology infrastructure informatics by jmuhlich on 2009-09-03 23:59:32 as
	Complementarity between public and commercial databases: new opportunities in medicinal chemistry informatics. [My Copy] Curr Top Med Chem, Vol. 7, No. 15. (2007), pp. 1502-1508. by C. Southan, P. Várkonyi, S. Muresan posted to emot drug database cheminformatics by jmuhlich on 2009-08-24 20:55:58 as along with 3 people sorelmuresan richardbickerton kuhn
	libAnnotationSBML: a library for exploiting SBML annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2292-2293. by Neil Swainston, Pedro Mendes posted to web semantic sbwiki sbml ontology model by jmuhlich on 2009-08-21 19:40:19 as along with 7 people and 1 group guhjy irenas neilswainston jonathancooper jvb Effie dullhunk NaCTeM
	Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models [My Copy] Journal of Integrative Bioinformatics, Vol. 4, No. 3. (01 October 2007) by Allyson L. Lister, Matthew Pocock, Anil Wipat posted to xml web semantic sbwiki sbml ontology model by jmuhlich on 2009-08-19 21:42:55 as
	Maintaining Transitive Closure of Graphs in SQL [My Copy] In Int. J. Information Technology, Vol. 5 (1999) by Guozhu Dong, Leonid Libkin, Jianwen Su, Limsoon Wong posted to database informatics infrastructure by jmuhlich on 2009-07-28 21:52:42 as
	On Principal Hessian Directions for Data Visualization and Dimension Reduction: Another Application of Stein's Lemma [My Copy] Journal of the American Statistical Association, Vol. 87, No. 420. (1992), pp. 1025-1039. by Ker C. Li posted to hessian sampling statistics by jmuhlich on 2009-07-18 00:41:34 as along with 1 person mmunson
	How Semantics Make Better Wikis [My Copy] (2006) by Eyal Oren, John G. Breslin, Stefan Decker posted to ontology sbwiki semantic wiki by jmuhlich on 2009-04-23 21:12:38 as
	A semantic wiki for collaborative knowledge formation [My Copy] In In Semantics (2005) by Sebastian Schaffert, Andreas Gruber, Rupert Westenthaler posted to informatics ontology sbwiki semantic workflow by jmuhlich on 2009-04-23 20:56:25 as
	How (not) to be a reductionist in a complex universe [My Copy] Reduction and the Special Sciences, Vol. 2008 (2008) by Karola Stotz posted to philosophy reduction science by jmuhlich on 2009-04-22 21:47:15 as
	Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation. [My Copy] IET systems biology, Vol. 2, No. 5. (September 2008), pp. 363-368. by M. L. Blinov, O. Ruebenacker, I. I. Moraru posted to model pathway rules by jmuhlich on 2009-04-16 16:28:53 as along with 1 person allysonlister
	SuperSite: dictionary of metabolite and drug binding sites in proteins [My Copy] Nucl. Acids Res. (8 October 2008), gkn618. by Andre, Stefan Gunther, Dominic Jansen, Carolin Heeger, Paul F. Thaben, Robert Preissner posted to cheminformatics database drug emot protein by jmuhlich on 2009-04-10 22:15:40 as along with 5 people and 1 group Effie pauldobson reyez lptolik pengchy NaCTeM
	Chemical Descriptors Library (CDL): A Generic, Open Source Software Library for Chemical Informatics [My Copy] J. Chem. Inf. Model. (20 September 2008) by Vladimir J. Sykora, David E. Leahy posted to cheminformatics open software source by jmuhlich on 2009-04-10 21:41:17 as along with 4 people egonw q_w_e_r_t_y lptolik zimbo1
	‘Metabolite-likeness’ as a criterion in the design and selection of pharmaceutical drug libraries [My Copy] Drug Discovery Today, Vol. 14, No. 1-2. (28 January 2009), pp. 31-40. by P. Dobson, Y. Patel, D. Kell posted to cheminformatics drug lipinski metabolite transport by jmuhlich on 2009-04-10 21:25:27 as along with 9 people mingzhi richardbickerton massivemayhem vpenelle lptolik pauldobson sschurer egonw dullhunk
	CellProfiler Analyst: data exploration and analysis software for complex image-based screens [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (15 November 2008), 482. by Thouis Jones, In Kang, Douglas Wheeler, et al.Robert Lindquist, Adam Papallo, David Sabatini, Polina Golland, Anne Carpenter posted to imaging informatics visualization by jmuhlich on 2009-04-02 22:10:18 as along with 4 people and 1 group singhsh mmcclean SauloBortolon lptolik TELEPAT-ES
	Network modeling links breast cancer susceptibility and centrosome dysfunction [My Copy] Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1338-1349. by Miguel A. Pujana, Jing-Dong J. Han, Lea M. Starita, et al.Kristen N. Stevens, Muneesh Tewari, Jin S. Ahn, Gad Rennert, Victor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M. ElShamy, Jean-Francois Rual, Douglas Levine, Laura S. Rozek, Rebecca S. Gelman, Kristin C. Gunsalus, Roger A. Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Sole, Pilar Hernandez, Conxi Lazaro, Katherine L. Nathanson, Barbara L. Weber, Michael E. Cusick, David E. Hill, Kenneth Offit, David M. Livingston, Stephen B. Gruber, Jeffrey D. Parvin, Marc Vidal posted to biology expression gene network systems by jmuhlich on 2009-01-23 20:28:50 as along with 11 people and 1 group tonamswish ajbattle jaimie koller jfr ealloza cjeans nedwards jdiezperezj phoenixzxl chrisamiller BioinfoCIPF
	Network-based classification of breast cancer metastasis. [My Copy] Molecular systems biology, Vol. 3 (16 October 2007) by Han-Yu Y. Chuang, Eunjung Lee, Yu-Tsueng T. Liu, Doheon Lee, Trey Ideker posted to biology gene interaction network pathway protein systems by jmuhlich on 2009-01-23 20:26:13 as along with 29 people and 4 groups yaredo fesousa ipark-kaist aviad_work AbnerCYH zufar provero Zephyrus ggallone giovenko winterschlaefer isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Complex Networks Jarman Lab Bioinformatics GeneGo
	Standardizing experimental protocols [My Copy] Current Opinion in Biotechnology, Vol. 19, No. 4. (August 2008), pp. 354-359. by Marcel Schilling, Andrea C. Pfeifer, Sebastian Bohl, Ursula Klingmüller posted to data informatics sbwiki standards workflow by jmuhlich on 2008-10-20 23:46:24 as along with 4 people mtaschuk Scis0000002 Vincent_Rouilly guhjy
	Carrier-mediated cellular uptake of pharmaceutical drugs: an exception or the rule? [My Copy] Nature reviews. Drug discovery, Vol. 7, No. 3. (March 2008), pp. 205-220. by Paul D. Dobson, Douglas B. Kell posted to drug informatics lipinski target by jmuhlich on 2008-08-26 12:09:14 as along with 5 people richardbickerton pauldobson dullhunk psique dbk
	Systems biology driven software design for the research enterprise. [My Copy] BMC bioinformatics, Vol. 9 (25 June 2008), 295. by John Boyle, Christopher Cavnor, Sarah Killcoyne, Ilya Shmulevich posted to database informatics infrastructure ontology warehouse workflow xml by jmuhlich on 2008-07-22 19:40:48 as along with 11 people pablocarb daforerog fgibson druvus jfr guhjy raistrick reyez GeeSharpMinor bootsy dullhunk
	Drug Target Identification Using Side-Effect Similarity [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266. by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J. Jensen, Peer Bork posted to drug emot target by jmuhlich on 2008-07-18 22:52:11 as along with 17 people anthropomorphism npt11tpn mitko mingzhi TRHvidsten dullhunk jfr zimbo1 bpcusack aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik raiyar
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to clique graph network reduction visualization by jmuhlich on 2008-07-18 22:50:53 as along with 24 people and 2 groups colmryan carlk saket diamantis yyby jfr jiny aramesh2 AbnerCYH MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Mycology OPIG
	Formal TCA cycle description based on elementary actions [My Copy] Journal of Biosciences, Vol. 32, No. 1. (29 January 2007), pp. 145-155. by Pierre Mazière, Nicolas Parisey, Marie Beurton-Aimar, Franck Molina posted to biology informatics ontology pathway standards sbwiki by jmuhlich on 2008-01-30 23:50:21 as
	LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. [My Copy] BMC bioinformatics, Vol. 8 Suppl 3 (2007) by A. K. Smith, K. H. Cheung, K. Y. Yip, M. Schultz, M. K. Gerstein posted to database informatics ontology semantic web sbwiki by jmuhlich on 2008-01-29 01:55:00 as along with 10 people and 1 group druvus nicklynch guhjy yas wnpx dullhunk hpiwowar pablomendes Simplicity dansullivanblk T_lab
	Are the current ontologies in biology good ontologies? [My Copy] Nature Biotechnology, Vol. 23, No. 9. (01 September 2005), pp. 1095-1098. by Larisa N. Soldatova, Ross D. King posted to ontology standards sbwiki by jmuhlich on 2008-01-29 00:09:47 as along with 17 people and 5 groups operon mikel_egana dagmar vkwn jerome irenas Yanno wcrosbie yas dullhunk onca anon_pl mhucka leechuck pablomendes peterli dansullivanblk Life Sciences Semantic Web (LSSW) dbk-lab Wikipedia CoP_CMS T_lab
	The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. [My Copy] Nature biotechnology, Vol. 22, No. 2. (February 2004), pp. 177-183. by Henning Hermjakob, Luisa Montecchi-Palazzi, Gary Bader, et al.Jérôme Wojcik, Lukasz Salwinski, Arnaud Ceol, Susan Moore, Sandra Orchard, Ugis Sarkans, Christian von Mering, Bernd Roechert, Sylvain Poux, Eva Jung, Henning Mersch, Paul Kersey, Michael Lappe, Yixue Li, Rong Zeng, Debashis Rana, Macha Nikolski, Holger Husi, Christine Brun, K. Shanker, Seth G. Grant, Chris Sander, Peer Bork, Weimin Zhu, Akhilesh Pandey, Alvis Brazma, Bernard Jacq, Marc Vidal, David Sherman, Pierre Legrain, Gianni Cesareni, Ioannis Xenarios, David Eisenberg, Boris Steipe, Chris Hogue, Rolf Apweiler posted to informatics ontology standards xml sbwiki by jmuhlich on 2008-01-25 18:33:24 as along with 7 people and 1 group aceol allysonlister irenas balajis grahamc lpfernandes lenov dbk-lab
	The cube data model: a conceptual model and algebra for on-line analytical processing in data warehouses [My Copy] Decision Support Systems, Vol. 27, No. 3. (December 1999), pp. 289-301. by Anindya Datta, Helen Thomas posted to cube data database datacube informatics olap warehouse sbwiki by jmuhlich on 2008-01-19 22:29:05 as
	The Semantic Web Revisited [My Copy] Intelligent Systems, IEEE [see also IEEE Intelligent Systems and Their Applications], Vol. 21, No. 3. (2006), pp. 96-101. by N. Shadbolt, T. Berners-Lee, W. Hall posted to informatics ontology semantic standards web sbwiki by jmuhlich on 2007-10-10 18:51:30 as along with 16 people and 2 groups mavergames Yuancheng egh masaka asilva ianturton rgb kbdamm mzygmunt ivor DaveWebster splzdnkl allancho federicopaoloni Friederichs uhland Social computing pileWorks
	A Collaborative Informatics Infrastructure for Multi-Scale Science [My Copy] Cluster Computing, Vol. 8, No. 4. (20 October 2005), pp. 243-253. by James Myers, Thomas Allison, Sandra Bittner, et al.Brett Didier, Michael Frenklach, William Green, Yen-Ling Ho, John Hewson, Wendy Koegler, Carina Lansing, David Leahy, Michael Lee, Renata Mccoy, Michael Minkoff, Sandeep Nijsure, Gregor Laszewski, David Montoya, Luwi Oluwole, Carmen Pancerella, Reinhardt Pinzon, William Pitz, Larry Rahn, Branko Ruscic, Karen Schuchardt, Eric Stephan, A. Wagner, Theresa Windus, Christine Yang posted to data informatics infrastructure standards sbwiki by jmuhlich on 2007-08-29 08:17:26 as along with 2 people and 3 groups dagmar nicklynch SorgerLab dIEMoSIRIS compneur
	The Gaggle: an open-source software system for integrating bioinformatics software and data sources. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by P. T. Shannon, D. J. Reiss, R. Bonneau, N. S. Baliga posted to data informatics infrastructure sbwiki by jmuhlich on 2007-08-27 23:11:31 as along with 13 people and 3 groups Zephyrus Thaverkamp druvus seemu daforerog guhjy julius dullhunk frohike cerami pablomendes waszak megraw Bioinformatics SysbioMPI-TCells SorgerLab
	Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager. [My Copy] Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 906-909. by A. R. Shah, M. Singhal, K. R. Klicker, E. G. Stephan, H. S. Wiley, K. M. Waters posted to data informatics infrastructure sbwiki by jmuhlich on 2007-08-27 22:57:54 as along with 3 people and 2 groups guhjy jfr julius SysbioMPI-TCells SorgerLab
	From XML to RDF: how semantic web technologies will change the design of 'omic' standards [My Copy] Nature Biotechnology, Vol. 23, No. 9. (07 September 2005), pp. 1099-1103. by Xiaoshu Wang, Robert Gorlitsky, Jonas S. Almeida posted to data semantic standards web by jmuhlich on 2007-07-11 18:41:35 as along with 15 people and 3 groups egonw eesruiz rvosa druvus badger_master irenas andytseng moborg wnpx dullhunk hpiwowar ianturton mza ibuch dansullivanblk ImagCom - Biomedical Text Computing dbk-lab SorgerLab
	XML and Semantic Transparency [My Copy] Cover Pages (November 1998) by Robin Cover posted to semantic web xml by jmuhlich on 2007-07-11 16:52:19 as along with 1 group SorgerLab
	Standard operating procedures [My Copy] Nat Biotech, Vol. 24, No. 11. (November 2006), pp. 1299-1299. posted to data standards sbwiki by jmuhlich on 2007-07-11 00:11:38 as along with 1 group SorgerLab
	A Collaborative Informatics Infrastructure for Multi-scale Science [My Copy] by James M. Thomas posted to informatics infrastructure by jmuhlich on 2007-07-10 23:42:51 as along with 2 people and 3 groups wnpx dagmar SorgerLab dIEMoSIRIS compneur
	Ontologies for Modeling and Simulation: An Initial Framework [My Copy] by John A. Miller, Gregory T. Baramidze, Amit P. Sheth, Gregory A. Silver, Paul A. Fishwick posted to ontology semantic web by jmuhlich on 2007-07-10 23:31:17 as along with 2 people and 3 groups wnpx dagmar SorgerLab dIEMoSIRIS compneur
	Towards Principles for the Design of Ontologies Used for Knowledge Sharing [My Copy] In Formal Ontology in Conceptual Analysis and Knowledge Representation (1993) by T. R. Gruber edited by N. Guarino, R. Poli posted to ontology sbwiki by jmuhlich on 2007-07-10 23:25:06 as along with 15 people and 1 group mjbell jahrynx wnpx msn pchampin knud valery_kugler nroovers anansi PunkRock blaubaer_tfw antzil slayven zeppe mzygmunt SorgerLab
	The Semantic Web [My Copy] Scientific American (May 2001) by Tim Berners-Lee, James Hendler, Ora Lassila posted to semantic web sbwiki by jmuhlich on 2007-07-10 23:19:02 as along with 7 people and 3 groups tdlt weelassie cvdamme bundschu giorgis nroovers slklug TCD-NDS102-Project SorgerLab generif_paper
	Are we stuck in the standards? [My Copy] Nature Biotechnology, Vol. 24, No. 11., pp. 1374-1376. by Catherine A. Ball posted to data standards sbwiki by jmuhlich on 2007-07-10 22:52:52 as along with 4 people and 3 groups dullhunk mhucka dagmar jfr SorgerLab dIEMoSIRIS compneur
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. posted to dna genome by jmuhlich on 2007-06-14 20:44:23 as along with 30 people and 4 groups balajis bertelsen gderwin polivares Eroslavochka timflutre pengchy raistrick guhjy cmmorel dpollard ilh djkt plofje ramensky joepickrell massivemayhem fishtank Garamonfok bioyang cabbagezs xingxu antonkratz mimulus_99 julianjonker gjuggler drbal maralena ep161302 jasonflannick JLab Bioinformatics EisenLab SorgerLab
	Assessing semantic similarity measures for the characterization of human regulatory pathways [My Copy] Bioinformatics, Vol. 22, No. 8. (15 April 2006), pp. 967-973. by Xiang Guo, Rongxiang Liu, Craig D. Shriver, Hai Hu, Michael N. Liebman posted to clustering gene ontology similarity by jmuhlich on 2007-06-13 19:54:17 as along with 1 person and 1 group MarcoAlvarez SorgerLab
	Database management for life sciences research [My Copy] SIGMOD Rec., Vol. 33, No. 2. (June 2004), pp. 15-20. by H. V. Jagadish, Frank Olken posted to no-tag by jmuhlich on 2007-05-29 22:35:11 as along with 6 people and 1 group johnwilkes neilernst nearora eweaver wnpx lei SorgerLab
	Direct Lyapunov exponent analysis enables parametric study of transient signalling governing cell behaviour. [My Copy] Syst Biol (Stevenage), Vol. 153, No. 6. (November 2006), pp. 425-432. by B. B. Aldridge, G. Haller, P. K. Sorger, D. A. Lauffenburger posted to dle sorgerlab by jmuhlich on 2007-03-28 18:36:16 as along with 1 person and 2 groups cdppublications SorgerLab CDP

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sbwiki	24
ontology	19
informatics	18
semantic	12
standards	9
data	8
web	8
infrastructure	7
database	6
drug	5
model	5
sbml	5
cheminformatics	4
xml	4
biology	3
emot	3
gene	3
network	3
pathway	3
workflow	3
annotation	2
lipinski	2
protein	2
reduction	2
systems	2
target	2
visualization	2
warehouse	2
clique	1
clustering	1
cube	1
datacube	1
dle	1
dna	1
expression	1
genome	1
graph	1
hessian	1
imaging	1
interaction	1
knowledge_management	1
metabolite	1
mi	1
miriam	1
olap	1
open	1
philosophy	1
rules	1
sampling	1
science	1
semiotics	1
similarity	1
software	1
sorgerlab	1
source	1
statistics	1
transport	1
wiki	1

jmuhlich's library 47 articles Export

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