Standards and ontologies in computational systems biology. Export

@article{citeulike:5699796, abstract = {With the growing importance of computational models in systems biology there has been much interest in recent years to develop standard model interchange languages that permit biologists to easily exchange models between different software tools. In the present chapter two chief model exchange standards, SBML (Systems Biology Markup Language) and CellML are described. In addition, other related features including visual layout initiatives, ontologies and best practices for model annotation are discussed. Software tools such as developer libraries and basic editing tools are also introduced, together with a discussion on the future of modelling languages and visualization tools in systems biology.}, author = {Sauro, Herbert M. and Bergmann, Frank T.}, citeulike-article-id = {5699796}, citeulike-linkout-0 = {http://dx.doi.org/10.1042/BSE0450211}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/18793134}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=18793134}, doi = {10.1042/BSE0450211}, issn = {0071-1365}, journal = {Essays in biochemistry}, keywords = {annotation, miriam, ontology, sbml, sbwiki}, pages = {211--222}, posted-at = {2009-10-21 19:16:06}, priority = {0}, title = {Standards and ontologies in computational systems biology.}, url = {http://dx.doi.org/10.1042/BSE0450211}, volume = {45}, year = {2008} }

TY - JOUR ID - citeulike:5699796 L3 - citeulike-article-id:5699796 N2 - With the growing importance of computational models in systems biology there has been much interest in recent years to develop standard model interchange languages that permit biologists to easily exchange models between different software tools. In the present chapter two chief model exchange standards, SBML (Systems Biology Markup Language) and CellML are described. In addition, other related features including visual layout initiatives, ontologies and best practices for model annotation are discussed. Software tools such as developer libraries and basic editing tools are also introduced, together with a discussion on the future of modelling languages and visualization tools in systems biology. JF - Essays in biochemistry SN - 0071-1365 EP - 222 TI - Standards and ontologies in computational systems biology. VL - 45 SP - 211 KW - annotation KW - miriam KW - ontology KW - sbml KW - sbwiki AU - Sauro, Herbert AU - Bergmann, Frank PY - 2008/// UR - http://dx.doi.org/10.1042/BSE0450211 ER -