jonathanjacobs's library 60 articles Export

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	Size, constant sequences, and optimal selection [My Copy] RNA, Vol. 11, No. 11. (1 November 2005), pp. 1701-1709. by Michal Legiewicz, Catherine Lozupone, R. O. B. Knight, Michael Yarus posted to aptamer dna evolution rna selex structure by jonathanjacobs on 2008-07-17 21:50:32 as along with 1 group Molecular Biology
	High-Throughput SHAPE Analysis Reveals Structures in HIV-1 Genomic RNA Strongly Conserved across Distinct Biological States [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e96. by Kevin A. Wilkinson, Robert J. Gorelick, Suzy M. Vasa, et al.Nicolas Guex, Alan Rein, David H. Mathews, Morgan C. Giddings, Kevin M. Weeks posted to dna fold function genome genomics hiv homolog human motif nascent native noncoding nucleocapsid nucleotide primer protein retroviral ribosome rna rnaprotein sequence shape structure transcriptase transcriptome trna virus by jonathanjacobs on 2008-05-08 16:40:11 as along with 1 person and 1 group kieran101 Molecular Biology
	The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression [My Copy] FEBS Journal, Vol. 272, No. 9. (2005), pp. 2118-2131. by Christophe Maris, Cyril Dominguez, Frederic H. T. Allain posted to conserved eukaryotes function motif protein review ribonucleoprotein rna rnp rrm sequences structure by jonathanjacobs on 2008-04-10 16:51:30 as along with 1 person and 2 groups marck Molecular Biology The La Autoantigen.
	MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation. [My Copy] Molecular cell, Vol. 30, No. 4. (23 May 2008), pp. 460-471. by Ulf Andersson A. Ørom, Finn Cilius C. Nielsen, Anders H. Lund posted to mirna mrna ribosome top translation by jonathanjacobs on 2008-09-12 22:24:39 as along with 3 people and 1 group valeriehilgers heliopais daforerog microRNA
	Identification of novel posttranscriptional targets of the BCR/ABL oncoprotein by ribonomics: requirement of E2F3 for BCR/ABL leukemogenesis [My Copy] Blood, Vol. 111, No. 2. (15 January 2008), pp. 816-828. by Anna M. Eiring, Paolo Neviani, Ramasamy Santhanam, et al.Joshua J. Oaks, Ji S. Chang, Mario Notari, William Willis, Carlo Gambacorti-Passerini, Stefano Volinia, Guido Marcucci, Michael A. Caligiuri, Gustavo W. Leone, Danilo Perrotti posted to apoptotic cell conserved development differentiation expression function hnrnpa kinase knockdown leukemia marrow mice mrna myelogenous myeloid network oncoprotein posttranscriptional posttranslational protein rbps regulation rna shrna stimuli survival transcription untranslated upregulated utr vivo by jonathanjacobs on 2008-04-18 22:55:15 as along with 1 group The La Autoantigen.
	La protein has a positive effect on the translation of TOP mRNAs in vivo [My Copy] Nucl. Acids Res., Vol. 28, No. 15. (1 August 2000), pp. 2927-2934. by Claudia Crosio, Pietro P. Boyl, Fabrizio Loreni, Paola Pierandrei-Amaldi, Francesco Amaldi posted to hypothesis la mrna oligopyrimidine plasmid protein ribosome translation utr vertebrates xenopus genes by jonathanjacobs on 2008-03-31 16:07:08 as along with 1 group The La Autoantigen.
	Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e92. by Andrea B. Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Z. Orozco, Oliver Mühlemann posted to cell codon conserved decay degradation evolution folding function gene human mechanism mrna nmd nonsensemediated pabpc pathway polya polyabinding posttranscriptional protein ptc regulation termination translation untranslated by jonathanjacobs on 2008-04-30 15:38:52 as along with 1 group PROTEIN TRANSLATION
	The multifunctional RNA-binding protein La is required for mouse development and for the establishment of embryonic stem cells. [My Copy] Mol Cell Biol, Vol. 26, No. 4. (February 2006), pp. 1445-1451. by J. M. Park, M. J. Kohn, M. W. Bruinsma, et al.C. Vech, R. V. Intine, S. Fuhrmann, A. Grinberg, I. Mukherjee, P. E. Love, M. S. Ko, M. L. DePamphilis, R. J. Maraia posted to biogenesis cell cells cerevisiae development embryonic erythematosus eukaryote gene la lupus mice mrna noncoding polymerase pombe protein ribosome rna saccharomyces schizosaccharomyces sjogrens snornas trna yeast by jonathanjacobs on 2008-03-31 21:28:15 as along with 1 person and 1 group miguel The La Autoantigen.
	RACK1 mRNA translation is regulated via a rapamycin-sensitive pathway and coordinated with ribosomal protein synthesis [My Copy] FEBS Letters, Vol. 579, No. 25. (24 October 2005), pp. 5517-5520. by Fabrizio Loreni, Valentina Iadevaia, Elisa Tino, Sara Caldarola, Francesco Amaldi posted to mrna ribosome top translation by jonathanjacobs on 2008-03-31 16:28:40 as
	Recognition of Nascent RNA by the Human La Antigen: Conserved and Divergent Features of Structure and Function [My Copy] Mol. Cell. Biol., Vol. 21, No. 2. (15 January 2001), pp. 367-379. by Richard J. Maraia, Robert V. Intine posted to eukaryote apoptosis chaperone evolution la motif mrna phosphoprotein protein rna snrnas structure transcription translation trna virus yeast by jonathanjacobs on 2008-03-27 18:37:20 as along with 1 person JamesIben
	BCR/ABL activates mdm2 mRNA translation via the La antigen [My Copy] Cancer Cell, Vol. 3, No. 2. (February 2003), pp. 145-160. by Rossana Trotta, Tatiana Vignudelli, Olivia Candini, et al.Robert V. Intine, Luisa Pecorari, Clara Guerzoni, Giorgia Santilli, Mike W. Byrom, Silvia Goldoni, Lance P. Ford, Michael A. Caligiuri, Richard J. Maraia, Danilo Perrotti, Bruno Calabretta posted to la mdm2 mrna translation by jonathanjacobs on 2008-03-27 18:32:34 as along with 1 group The La Autoantigen.
	Nuclear Import and the Evolution of a Multifunctional RNA-binding Protein [My Copy] J. Cell Biol., Vol. 143, No. 4. (16 November 1998), pp. 887-899. by Jonathan S. Rosenblum, Lucy F. Pemberton, Neris Bonifaci, Gunter Blobel posted to protein nucleus evolution lhp1 rna sla1 by jonathanjacobs on 2008-03-26 15:58:29 as along with 1 group The La Autoantigen.
	Early nonsense: mRNA decay solves a translational problem [My Copy] Nature Reviews Molecular Cell Biology, Vol. 7, No. 6. (June 2006), pp. 415-425. by Nadia Amrani, Matthew S. Sachs, Allan Jacobson posted to mrna nmd nonsensemediated translation by jonathanjacobs on 2008-10-31 17:43:26 as along with 3 people and 4 groups anafi dchughes leemary4 PROTEIN TRANSLATION Molecular Biology G4ID Genetics-of-Gambling
	Akt phosphorylation of La regulates specific mRNA translation in glial progenitors. [My Copy] Oncogene (6 October 2008) by F Brenet, N D D. Socci, N Sonenberg, E C C. Holland posted to la mrna by jonathanjacobs on 2008-10-07 17:20:01 as
	RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts [My Copy] Nat. Protocols, Vol. 1, No. 1. (June 2006), pp. 302-307. by Jack D. Keene, Jordan M. Komisarow, Matthew B. Friedersdorf posted to affinity genomics rna rnp by jonathanjacobs on 2008-08-29 00:49:33 as along with 1 person kieran101
	The La antigen shuttles between the nucleus and the cytoplasm in CV-1 cells. [My Copy] Molecular and cellular biochemistry, Vol. 85, No. 2. (21 February 1989), pp. 103-114. by M. Bachmann, K. Pfeifer, H. C. Schröder, W. E. Müller posted to cytoplasm la nucleus shuttling by jonathanjacobs on 2008-08-26 02:30:04 as
	Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 13. (19 June 2001), pp. 7018-7024. by J. D. Keene posted to gene mrna network operons polyabinding polycistronic protein regulons ribonucleoproteins rna rnabinding translation by jonathanjacobs on 2008-08-25 23:31:13 as along with 1 person klo
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by B. T. Wilhelm, S. Marguerat, S. Watt, et al.F. Schubert, V. Wood, I. Goodhead, C. J. Penkett, J. Rogers, J. Bähler posted to array cell dna exon gene genome intron pombe rna schizosaccharomyces sequence transcription transcriptome yeast by jonathanjacobs on 2008-06-26 12:17:44 as along with 12 people and 1 group jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt GeeSharpMinor guhjy semrich Molecular Biology
	Diversity of Oligonucleotide Functions [My Copy] Annual Review of Biochemistry, Vol. 64, No. 1. (1995), pp. 763-797. by L. Gold, B. Polisky, O. Uhlenbeck, M. Yarus posted to dna ligands oligonucleotide protein rna selex structure by jonathanjacobs on 2008-06-23 16:20:18 as
	Identification of RNA ligands that bind hepatitis C virus polymerase selectively and inhibit its RNA synthesis from the natural viral RNA templates [My Copy] Virology, Vol. 307, No. 2. (15 March 2003), pp. 301-316. by Nam V. Vo, Jong-Won Oh, Michael M. Lai posted to aptamer conserved evolution hcv ligand nucleotide polymerase protein purine pyrimidine rna selex sequence structure viral by jonathanjacobs on 2008-06-16 15:11:45 as
	Downregulation of the essential Trypanosoma brucei La protein affects accumulation of elongator methionyl-tRNA [My Copy] Molecular and Biochemical Parasitology, Vol. 144, No. 1. (November 2005), pp. 104-108. by George K. Arhin, Shuiyuan Shen, Iehsus F. Perez, Christian Tschudi, Elisabetta Ullu posted to cerevisiae chaperone conserved cytoplasmic database degradation endonucleolytic eukaryotes eukaryotic evolution experimental function gene homologue human la methionylpretrna microarray molecular motif mrnas nuclear nuclease nucleolar oligou phosphoprotein pol polymerase polyuridine prerrna presl pretrnas protein protozoa ribonucleoprotein rna saccharomyces snorna snrna splicing transcription trna trypanosome by jonathanjacobs on 2008-04-08 19:59:38 as
	The Trypanosoma brucei La protein is a candidate poly(U) shield that impacts spliced leader RNA maturation and tRNA intron removal [My Copy] International Journal for Parasitology, Vol. 35, No. 4. (1 April 2005), pp. 359-366. by Silvie Foldynova-Trantirkova, Zdenek Paris, Nancy R. Sturm, David A. Campbell, Julius Lukes posted to eukaryotic gene intron la lethality methylation motif mrna nuclear nucleolar pathway polyu protein ribosome rna splicing transsplicing trnatyr trypanosoma vector viable yeast by jonathanjacobs on 2008-04-08 19:55:29 as along with 1 group The La Autoantigen.
	Genetic analysis of a La homolog in Drosophila melanogaster [My Copy] Nucl. Acids Res., Vol. 28, No. 5. (1 March 2000), pp. 1078-1084. by Chunyang Bai, Peter P. Tolias posted to conserved development drosophila embryo embryonic eukaryote gene genetic homolog hypothesis ires la larvae melanogaster morphogenesis polymerase protein ribosome rna translational vivo by jonathanjacobs on 2008-04-08 19:52:25 as along with 1 group The La Autoantigen.
	A La-Related Protein Modulates 7SK snRNP Integrity to Suppress P-TEFb-Dependent Transcriptional Elongation and Tumorigenesis [My Copy] Molecular Cell, Vol. 29, No. 5. (14 March 2008), pp. 588-599. by Nanhai He, Nadine S. Jahchan, Eunmee Hong, et al.Qiang Li, Mark A. Bayfield, Richard J. Maraia, Kunxin Luo, Qiang Zhou posted to differentiation drosophila homolog human la pips polymerase premrna protein ptefb rna snrna snrnp transcription tumorigenesis nucleus by jonathanjacobs on 2008-03-31 18:13:35 as along with 1 group The La Autoantigen.
	Novel CNBP- and La-based translation control systems for mammalian cells. [My Copy] Biotechnol Bioeng, Vol. 81, No. 1. (5 January 2003), pp. 1-12. by S. Schlatter, M. Fussenegger posted to initiation ires la mammalian microscopy mrna plasmid promoter protein ribosome structure top transcription translation utr xenopus genes by jonathanjacobs on 2008-03-31 16:43:51 as along with 1 person evaf
	Was the initiation of translation in early eukaryotes IRES-driven? [My Copy] Trends in Biochemical Sciences, Vol. 33, No. 2. (February 2008), pp. 58-64. by Greco Hernandez posted to eukaryote evolution hypothesis intron ires mrna ribosome structure translation viral by jonathanjacobs on 2008-03-31 16:40:19 as along with 1 group Molecular Biology
	Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs [My Copy] Proceedings of the National Academy of Sciences, Vol. 101, No. 2. (13 January 2004), pp. 434-439. by Maki Inada, Christine Guthrie posted to genomics la mrna polymerase protein ribosome rna saccharomyces transcription translation eukaryote trna lhp1 by jonathanjacobs on 2008-03-31 16:37:55 as along with 1 group The La Autoantigen.
	Identification of secondary structure in the 5′-untranslated region of the human adrenomedullin mRNA with implications for the regulation of mRNA translation [My Copy] Oncogene, Vol. aop, No. current. by F. Brenet, N. Dussault, C. Delfino, et al.F. Boudouresque, O. Chinot, P. M. Martin, L. H. Ouafik posted to mrna protein rna structure translation utr by jonathanjacobs on 2008-03-31 16:27:23 as
	A Three-Stemmed mRNA Pseudoknot in the SARS Coronavirus Frameshift Signal [My Copy] PLoS Biology, Vol. 3, No. 6. (1 June 2005), e172. by Ewan P. Plant, Gabriela C. Pérez-Alvarado, Jonathan L. Jacobs, Bani Mukhopadhyay, Mirko Hennig, Jonathan D. Dinman posted to genetics coronavirus genomics computational database frameshift genbank motif mrna mutagenesis mutation phylogenetic predicted protein pseudoknot ribosome rna structure viral by jonathanjacobs on 2008-03-28 04:27:36 as along with 1 person physics
	La Protein Is Associated with Terminal Oligopyrimidine mRNAs in Actively Translating Polysomes [My Copy] J. Biol. Chem., Vol. 278, No. 37. (12 September 2003), pp. 35145-35151. by Beatrice Cardinali, Claudia Carissimi, Paolo Gravina, Paola Pierandrei-Amaldi posted to la mrna pyrimidine top translation xenopus by jonathanjacobs on 2008-09-25 21:44:57 as
	Analysis of single- and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 74, No. 11. (November 1977), pp. 4835-4838. by G. K. Mcmaster, G. G. Carmichael posted to classic dna electrophoresis gel rna by jonathanjacobs on 2008-09-18 23:26:31 as
	La gets its wings [My Copy] Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 303-305. by Daniel J. Kenan, Jack D. Keene posted to la lhp1 rna rna-binding rnabinding rrm sla1 by jonathanjacobs on 2008-09-12 18:37:59 as along with 1 group The La Autoantigen.
	Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers. [My Copy] RNA, Vol. 13, No. 4. (April 2007), pp. 614-622. by J. König, C. Julius, S. Baumann, M. Homann, H. U. Göringer, M. Feldbrügge posted to hybrid rna selection selex three yeast by jonathanjacobs on 2008-08-27 22:50:19 as along with 2 people guhjy yeastyboy
	Differential Phosphorylation and Subcellular Localization of La RNPs Associated with Precursor tRNAs and Translation-Related mRNAs [My Copy] Molecular Cell, Vol. 12, No. 5. (November 2003), pp. 1301-1307. by Robert V. Intine, Scott A. Tenenbaum, Amy L. Sakulich, Jack D. Keene, Richard J. Maraia posted to la localization phosphoprotein rnp translation by jonathanjacobs on 2008-08-26 02:15:47 as
	The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 10. (May 2000), pp. 5273-5278. by Peter A. Takizawa, Ronald D. Vale posted to ash1 localization mrna myo4 protocol rna she3 by jonathanjacobs on 2008-08-26 02:12:32 as
	Two Yeast La Motif-containing Proteins Are RNA-binding Proteins that Associate with Polyribosomes [My Copy] Mol. Biol. Cell, Vol. 10, No. 11. (1 November 1999), pp. 3849-3862. by Suzanne G. Sobel, Sandra L. Wolin posted to la lhp1 ribosome rna slf1p sro9p translation by jonathanjacobs on 2008-08-26 02:10:28 as
	Libraries for genomic SELEX [My Copy] Nucl. Acids Res., Vol. 25, No. 4. (15 February 1997), pp. 781-786. by B. S. Singer, T. Shtatland, D. Brown, L. Gold posted to rna selex by jonathanjacobs on 2008-08-26 01:57:47 as along with 1 group Molecular Biology
	Trading translation with RNA-binding proteins [My Copy] RNA, Vol. 14, No. 3. (March 2008), pp. 404-409. by I. Abaza, F. Gebauer posted to mrnas protein regulation ribonucleoprotein rna rna-binding translation by jonathanjacobs on 2008-08-25 23:36:30 as
	RNA regulons: coordination of post-transcriptional events [My Copy] Nature Reviews Genetics, Vol. 8, No. 7., pp. 533-543. by Jack D. Keene posted to expression gene mrnas protein regulons rna translation by jonathanjacobs on 2008-08-25 23:27:03 as along with 2 people and 2 groups guhjy ajgentles Molecular Biology PROTEIN TRANSLATION
	PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Ashton Belew, Nicholaus Hepler, Jonathan Jacobs, Jonathan Dinman posted to bioinformatics biology cerevisiae computational database decay frameshift genome mrna nmd pseudoknot rna saccharomyces structure translation virus yeast by jonathanjacobs on 2008-07-17 17:12:43 as
	THE LA PROTEIN [My Copy] Annual Review of Biochemistry, Vol. 71, No. 1. (2002), pp. 375-403. by Sandra L. Wolin, Tommy Cedervall posted to cell data eukaryotic genetic la mrnas protein review rna translation trna by jonathanjacobs on 2008-06-20 18:21:04 as along with 1 group The La Autoantigen.
	In vitro selection of RNA molecules that bind specific ligands. [My Copy] Nature, Vol. 346, No. 6287. (30 August 1990), pp. 818-822. by A. D. Ellington, J. W. Szostak posted to evolution ligand rna selex sequence by jonathanjacobs on 2008-06-16 15:20:06 as along with 2 people mtagaya chaoyongyang
	Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase [My Copy] Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510. by C. Tuerk, L. Gold posted to affinity dna evolution ligand mrna protein rna selex sequence by jonathanjacobs on 2008-06-16 15:17:45 as along with 3 people and 3 groups absterga malcook indigoviolet SIMR bioinformatics EisenLab Molecular Biology
	RNA sequence and secondary structure participate in high-affinity CsrA-RNA interaction [My Copy] RNA, Vol. 11, No. 10. (1 October 2005), pp. 1579-1587. by Ashok K. Dubey, Carol S. Baker, T. O. N. Y. Romeo, P. A. U. L. Babitzke posted to affinity consensus evolution gene ligand mrna nucleotide protein ribosome rna selex structure translation by jonathanjacobs on 2008-06-16 15:15:30 as
	SELEX—A (r)evolutionary method to generate high-affinity nucleic acid ligands [My Copy] Biomolecular Engineering, Vol. 24, No. 4. (October 2007), pp. 381-403. by R. Stoltenburg, C. Reinemann, B. Strehlitz posted to affinity aptamer dna evolution ligands molecular oligonucleotide polymerase protein proteomics research rna science selection selex by jonathanjacobs on 2008-05-14 18:48:28 as along with 8 people emmahe dbikard cambray Vincent_Rouilly jec105 kuaaaaa erdos guhjy
	Genomic systematic evolution of ligands by exponential enrichment (Genomic SELEX) for the identification of protein-binding RNAs independent of their expression levels [My Copy] Nat. Protocols, Vol. 1, No. 5. (December 2006), pp. 2204-2212. by Christina Lorenz, Frederike von Pelchrzim, Renee Schroeder posted to affinity dna evolution experimental expression gene genomics pcr protein protocol rna selex transcription by jonathanjacobs on 2008-05-14 01:36:45 as along with 1 group Molecular Biology
	A bona fide La protein is required for embryogenesis in Arabidopsis thaliana [My Copy] Nucl. Acids Res., Vol. 35, No. 10. (11 May 2007), pp. 3306-3321. by Sophie Fleurdepine, Jean-Marc Deragon, Martine Devic, Jocelyne Guilleminot, Cecile Bousquet-Antonelli posted to arabidopsis biogenesis cerevisiae development embryogenesis embryonic genome la lethal motif mutant nuclear nucleolar nucleoplasm phenotype phylogenetic plant protein ribosome rna saccharomyces thaliana by jonathanjacobs on 2008-04-08 19:44:53 as along with 1 group The La Autoantigen.
	Following translation by single ribosomes one codon at a time [My Copy] Nature (09 March 2008) by Jin-Der Wen, Laura Lancaster, Courtney Hodges, et al.Ana-Carolina Zeri, Shige H. Yoshimura, Harry F. Noller, Carlos Bustamante, Ignacio Tinoco posted to codon hairpins mrna ribosome rna structure translation translocation tweezers by jonathanjacobs on 2008-04-02 22:44:09 as along with 4 people jdwen dchughes melting cactus
	Cap-Independent Translation Is Required for Starvation-Induced Differentiation in Yeast [My Copy] Science, Vol. 317, No. 5842. (31 August 2007), pp. 1224-1227. by Wendy V. Gilbert, Kaihong Zhou, Tamira K. Butler, Jennifer A. Doudna posted to cellular developmental genes growth initiation ires mechanism molecular mrna mutation pab pathway polya protein ribosome rna stress structure synthesis translation untranslated utr viral yeast by jonathanjacobs on 2008-04-02 16:23:19 as along with 1 person and 1 group balabu Molecular Biology
	Proteomic analysis of reaper 5' untranslated region-interacting factors isolated by tobramycin affinity-selection reveals a role for La antigen in reaper mRNA translation [My Copy] PROTEOMICS, Vol. 5, No. 6. (2005), pp. 1645-1655. by Paula Vazquez-Pianzola, Henning Urlaub, Rolando Rivera-Pomar posted to la rna translation utr by jonathanjacobs on 2008-03-31 16:31:55 as along with 1 group The La Autoantigen.

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rna	42
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