jonilaserson's library 80 articles Export

	A choice model with infinitely many latent features [My Copy] In ICML '06: Proceedings of the 23rd international conference on Machine learning (2006), pp. 361-368. by Dilan Görür, Frank Jäkel, Carl E. Rasmussen posted to model mcmc indian-buffet-process by jonilaserson on 2009-11-16 21:32:17 as along with 2 people bayes jsr
	Beam sampling for the infinite hidden Markov model [My Copy] In ICML '08: Proceedings of the 25th international conference on Machine learning (2008), pp. 1088-1095. by Jurgen Van Gael, Yunus Saatci, Yee W. Teh, Zoubin Ghahramani posted to slice-sampling model mcmc dirichlet-process by jonilaserson on 2009-11-12 20:41:25 as along with 1 person kwoodsend
	Detecting Abnormal Events via Hierarchical Dirichlet Processes [My Copy] Advances in Knowledge Discovery and Data Mining (2009), pp. 278-289. by Xian-Xing Zhang, Hua Liu, Yang Gao, Derek Hu posted to slice-sampling model dirichlet-process by jonilaserson on 2009-11-12 20:33:11 as
	The Phylogenetic Indian Buffet Process: A Non-Exchangeable Nonparametric Prior for Latent Features [My Copy] by Kurt posted to phylogenetic-tree nonparametric model mcmc indian-buffet-process dirichlet by jonilaserson on 2009-11-12 20:10:35 as
	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted to model hmm clustering cancer array_cgh by jonilaserson on 2009-10-29 03:52:43 as along with 5 people jfr dolchan rdiaz kdpreter nuin
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to solexa sequencing noise error_rates by jonilaserson on 2009-10-13 21:20:36 as along with 18 people and 1 group hzoltan n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correction [My Copy] Research in Computational Molecular Biology (2009), pp. 271-284. by Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel posted to variants sequencing mcmc hiv dirichlet bayes 454 by jonilaserson on 2009-10-08 20:37:53 as along with 1 person dakelley
	High-Throughput Sequencing of the Zebrafish Antibody Repertoire [My Copy] Science, Vol. 324, No. 5928. (8 May 2009), pp. 807-810. by Joshua A. Weinstein, Ning Jiang, Richard A. White, Daniel S. Fisher, Stephen R. Quake posted to zebrafish variants sequencing rna population metagenomics clustering anitbody 454 by jonilaserson on 2009-09-02 08:27:13 as along with 7 people guhjy gbloeb absterga reyez jbhiatt katiehumphry pineapple
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to variants sequencing metagenomics clustering 454 by jonilaserson on 2009-08-28 19:15:28 as along with 7 people and 2 groups halinat kinestetika jgill skembel druvus orzenil danmaclean iSEEM Bioinformatics
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted to simulation sequencing metagenomics 454 by jonilaserson on 2009-08-26 03:09:21 as along with 10 people and 2 groups polivares michaelbarton idoerg sriesenfeld skembel guhjy azazello hpaces druvus nuin BergmanLab iSEEM
	Coastal <i>Synechococcus</i> metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity [My Copy] Environmental Microbiology, Vol. 11, No. 2. (2009), pp. 349-359. by B. Palenik, Q. Ren, V. Tai, I. T. Paulsen posted to sequencing metagenomics denovo 454 by jonilaserson on 2009-08-26 02:37:46 as
	Community-wide analysis of microbial genome sequence signatures [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R85. by Gregory Dick, Anders Andersson, Brett Baker, et al.Sheri Simmons, Brian Thomas, A. Pepper Yelton, Jillian Banfield posted to som sequencing sanger metagenomics clustering by jonilaserson on 2009-08-26 01:34:11 as along with 7 people and 2 groups dakelley druvus bdessailly skembel djkt neils barriot Orengo Group Journal Picks iSEEM
	Single-molecule sequencing of an individual human genome [My Copy] Nature Biotechnology, Vol. 27, No. 9. (10 August 2009), pp. 847-850. by Dmitry Pushkarev, Norma F. Neff, Stephen R. Quake posted to snp sequencing reference human helicos genome by jonilaserson on 2009-08-26 00:02:00 as along with 25 people and 3 groups JamesBarger n00c ethanmj MurphysLab leliavski inesdesantiago fenghezi megraw kintoki neils daforerog gangcai mqbphcw3 jmanning2k druvus alexknight qayub natstreet mtagaya kinestetika guhjy installe psique SeaBird danmaclean Journal picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen Bioinformatics
	Quantification of rare allelic variants from pooled genomic DNA [My Copy] Nat Meth, Vol. 6, No. 4. (01 April 2009), pp. 263-265. by Todd E. Druley, Francesco L. M. Vallania, Daniel J. Wegner, et al.Katherine E. Varley, Olivia L. Knowles, Jacqueline A. Bonds, Sarah W. Robison, Scott W. Doniger, Aaron Hamvas, F. Sessions Cole, Justin C. Fay, Robi D. Mitra posted to variants snp sequencing human by jonilaserson on 2009-08-18 01:03:50 as along with 9 people n00c austin_mcdonald natstreet guhjy fenghezi giovanni psique absterga jbhiatt
	Profiling model T cell metagenomes with short reads [My Copy] Bioinformatics (9 January 2009), btp010. by Rene L. Warren, Brad H. Nelson, Robert A. Holt posted to cancer sequencing by jonilaserson on 2009-08-11 00:15:15 as along with 2 people druvus rschulz
	Combinatorial algorithms for DNA sequence assembly [My Copy] Algorithmica, Vol. 13, No. 1. (1 February 1995), pp. 7-51. by J. Kececioglu, E. Myers posted to alignment genome sequencing by jonilaserson on 2009-08-06 23:57:17 as along with 1 person and 1 group condon beta
	Improved Criteria for Clustering Based on the Posterior Similarity Matrix [My Copy] Bayesian analysis by Arno Fritsch And Katja Ickstadt posted to clustering dirichlet mcmc model by jonilaserson on 2009-08-06 22:57:19 as along with 1 person vlachmore
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted to 454 chimera metagenomics sanger sequencing by jonilaserson on 2009-08-04 19:36:44 as along with 10 people and 3 groups inquil dakelley hwright jlgreen chocolate2009 jmeppley vaulot Thaverkamp neils skoch3 iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted to cancer sequencing structural-variation by jonilaserson on 2009-07-31 22:16:36 as along with 16 people n00c tommcdonagh jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez caseybrown pkonings rodney davfre djkt
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to map rna sequencing by jonilaserson on 2009-07-31 02:08:33 as along with 28 people and 5 groups cthachuk hzoltan tonamswish heliopais giovenko jfr torfinnnome daforerog mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to rna sequencing splicing by jonilaserson on 2009-07-27 23:54:40 as along with 20 people hzoltan torfinnnome n00c ericrpaquet ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Evaluation of next generation sequencing platforms for population targeted sequencing studies [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to 454 sequencing snp solexa solid by jonilaserson on 2009-07-23 23:05:08 as along with 24 people and 2 groups jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855. by Gene W. Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B. Burge posted to microarrays rna splicing by jonilaserson on 2009-07-23 22:20:25 as along with 4 people and 1 group eoghanharr radek penka stajich Nie
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to denovo grapes rna sequencing by jonilaserson on 2009-07-22 22:50:01 as along with 20 people and 1 group hzoltan cthachuk GustavoLacerda jamselem n00c ghattem nlapalu jmcq dandaman abizar dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to microarrays structural-variation by jonilaserson on 2009-07-20 20:13:01 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to mouse rna sequencing splicing by jonilaserson on 2009-07-17 00:44:34 as along with 42 people and 2 groups manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	A geometric approach for classification and comparison of structural variants. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i222-230. by Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael posted to cnv microarrays sequencing structural-variation by jonilaserson on 2009-07-16 01:51:03 as along with 5 people and 1 group rdiaz dakelley operon APRegier AlexBateman Journal picks
	Mapping DNA structural variation in dogs [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 500-509. by Wei-Kang Chen, Joshua D. Swartz, Laura J. Rush, Carlos E. Alvarez posted to cnv dog microarrays structural-variation by jonilaserson on 2009-07-16 01:41:24 as along with 2 people Schmidtc djkt
	MSB: A mean-shift-based approach for the analysis of structural variation in the genome [My Copy] Genome Research, Vol. 19, No. 1. (26 January 2009), pp. 106-117. by Lu-Yong Wang, Alexej Abyzov, Jan O. Korbel, Michael Snyder, Mark Gerstein posted to microarrays structural-variation by jonilaserson on 2009-07-16 01:39:45 as along with 5 people jandot jfr sameersoi rdiaz operon
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to rna sequencing solexa by jonilaserson on 2009-07-16 01:36:06 as along with 46 people and 2 groups cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes [My Copy] Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853. by Barbara E. Stranger, Matthew S. Forrest, Mark Dunning, et al.Catherine E. Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P. Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W. Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E. Hurles, Emmanouil T. Dermitzakis posted to cnv human sequencing snp structural-variation by jonilaserson on 2009-07-16 01:26:07 as along with 32 people and 5 groups biovils lp2 daveGerrard sameersoi timhubbard Zephyrus ajbattle ilyashl emptyhb buyske zufar koller waszak daed psique jo_davies srp33 guhjy jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown frohike jandot Roswell Cancer Crosstalk Visiting Position Bioinformatics EisenLab cis-regulatory-evolution
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to cnv human sequencing snp by jonilaserson on 2009-07-16 01:23:38 as along with 41 people and 7 groups sameersoi lp2 ilyashl ajbattle darian jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to 454 human sequencing structural-variation by jonilaserson on 2009-07-15 02:27:43 as along with 22 people and 2 groups torfinnnome jandot n00c jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to alignment reference sequencing solexa by jonilaserson on 2009-07-15 02:08:08 as along with 39 people and 2 groups Julien_Fayolle seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to 454 denovo sanger sequencing by jonilaserson on 2009-07-15 01:59:46 as along with 17 people and 2 groups GustavoLacerda n00c APRegier dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to denovo metagenomics sequencing by jonilaserson on 2009-07-15 01:48:38 as along with 30 people and 1 group jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip APRegier jmcq stevebs michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to rna sequencing splicing by jonilaserson on 2009-07-15 01:41:40 as along with 24 people and 2 groups cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya gdb guhjy ThomasDOtto n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to denovo sequencing by jonilaserson on 2009-07-15 01:40:14 as along with 17 people and 1 group n00c carlk APRegier jandot natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda stajich Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to denovo sequencing by jonilaserson on 2009-07-15 01:39:06 as along with 22 people and 1 group n00c carlk jmanning2k APRegier pachorip operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to denovo sequencing by jonilaserson on 2009-07-15 01:38:24 as along with 41 people and 3 groups vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	A highly annotated whole-genome sequence of a Korean individual : Abstract : Nature [My Copy] by Young S. Jong-Il Kim posted to human sequencing by jonilaserson on 2009-07-15 01:37:34 as
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to sequencing structural-variation by jonilaserson on 2009-07-15 01:28:40 as along with 17 people hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to sequencing snp solexa by jonilaserson on 2009-07-15 01:27:56 as along with 19 people Julien_Fayolle torfinnnome hzoltan seb1 maren adijr greg jandot guhjy n00c druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	The complete genome of an individual by massively parallel DNA sequencing. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju J. Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Z. Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to 454 human sequencing by jonilaserson on 2009-07-15 01:27:14 as along with 23 people and 2 groups rshe n00c jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson bpb Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen
	Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance [My Copy] Genome Research, Vol. 17, No. 8. (1 August 2007), pp. 1195-1201. by Chunlin Wang, Yumi Mitsuya, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer posted to 454 hiv sequencing variants by jonilaserson on 2009-07-15 01:26:32 as along with 1 person michaelbarton
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to 454 sequencing by jonilaserson on 2009-07-15 01:25:25 as along with 38 people and 5 groups n00c rshe seb1 pachorip katiehumphry michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane Ka-Shu K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to denovo human sequencing snp solexa by jonilaserson on 2009-07-15 01:24:40 as along with 15 people rshe n00c fenghezi kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to denovo human sequencing solexa by jonilaserson on 2009-07-15 01:22:01 as along with 26 people and 2 groups jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda operon polivares reyez jasontsai n00c humburg dakelley jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	Interpreting the unculturable majority [My Copy] Nat Meth, Vol. 4, No. 6. (June 2007), pp. 479-480. by Lior Pachter posted to metagenomics sequencing by jonilaserson on 2009-07-15 01:20:17 as along with 3 people jmeppley Thaverkamp carlk
	Viral population estimation using pyrosequencing. [My Copy] PLoS computational biology, Vol. 4, No. 4. (9 April 2008), e1000074. by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, et al.Soo-Yon Y. Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W. Shafer, Niko Beerenwinkel posted to 454 hiv sequencing variants by jonilaserson on 2009-07-15 01:18:41 as along with 6 people and 2 groups nfparrish ghattem hpaces jmeppley bmaust djkt SIMR bioinformatics iSEEM

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sequencing	48
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rna	11
structural-variation	10
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vision	8
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