jri's library 616 articles Export

	Multilocus Analysis of Nucleotide Variation and Speciation in Oryza officinalis and Its Close Relatives [My Copy] Molecular Biology and Evolution, Vol. 24, No. 3. (March 2007), pp. 769-783. by Zhang, Lin-Bin, Ge, Song posted to speciation by jri on 2008-01-18 04:29:25 as
	Using Multilocus Sequence Data to Assess Population Structure, Natural Selection, and Linkage Disequilibrium in Wild Tomatoes [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2310-2322. by Uraiwan Arunyawat, Wolfgang Stephan, Thomas Stadler posted to no-tag by jri on 2008-01-17 19:31:45 as along with 3 people and 1 group ryanraaum ArtemPankin candypmcg Khavkin's lab
	Reduced Recombination Rate and Genetic Differentiation Between the M and S Forms of Anopheles gambiae s.s. [My Copy] Genetics, Vol. 174, No. 4. (1 December 2006), pp. 2081-2093. by Michel A. Slotman, Lisa J. Reimer, Tara Thiemann, Guimogo Dolo, Etienne Fondjo, Gregory C. Lanzaro posted to dpg by jri on 2007-01-16 07:53:54 as
	Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting [My Copy] PLoS Genet, Vol. 2, No. 10. (27 October 2006), e173. by Daniel A. Pollard, Venky N. Iyer, Alan M. Moses, Michael B. Eisen posted to no-tag by jri on 2007-01-12 01:30:41 as along with 2 people and 1 group mspivako emptyhb Journal picks
	Inferring the Demographic History and Rate of Adaptive Substitution in Drosophila [My Copy] PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e166. by Haipeng Li, Wolfgang Stephan posted to no-tag by jri on 2007-01-12 01:30:11 as along with 1 person pradiptaray
	B. A. Counterman and M. A. F. Noor, Test for Introgression between Cactophilic Drosophila [My Copy] posted to no-tag by jri on 2007-01-11 19:21:10 as
	Dramatic amplification of a rice transposable element during recent domestication [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 47. (21 November 2006), pp. 17620-17625. by Ken Naito, Eunyoung Cho, Guojun Yang, et al.Matthew A. Campbell, Kentaro Yano, Yutaka Okumoto, Takatoshi Tanisaka, Susan R. Wessler posted to no-tag by jri on 2007-01-08 19:15:07 as along with 1 person operon
	Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome [My Copy] Heredity, Vol. 97, No. 6. (20 September 2006), pp. 381-388. by F. Sabot, A. H. Schulman posted to no-tag by jri on 2007-01-07 20:27:25 as along with 5 people and 2 groups timflutre tolot27 Terkko dchughes ArtemPankin G4ID Genetics-of-Gambling
	Rarity Value and Species Extinction: The Anthropogenic Allee Effect [My Copy] PLoS Biology, Vol. 4, No. 12. (1 December 2006), e415. by Franck Courchamp, Elena Angulo, Philippe Rivalan, et al.Richard J. Hall, Laetitia Signoret, Leigh Bull, Yves Meinard posted to no-tag by jri on 2007-01-07 10:57:57 as along with 2 people and 1 group cmm mullonc FAB-lab
	Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. [My Copy] Nature, Vol. 445, No. 7123. (4 January 2007), pp. 82-85. by Cathy Haag-Liautard, Mark Dorris, Xulio Maside, et al.Steven Macaskill, Daniel L. Halligan, David Houle, Brian Charlesworth, Peter D. Keightley posted to no-tag by jri on 2007-01-03 22:38:14 as along with 7 people and 1 group daveGerrard operon dpollard stajich ramensky lusk gjuggler EisenLab
	From the Cover: Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties [My Copy] PNAS, Vol. 103, No. 49. (5 December 2006), pp. 18656-18661. by Nils Rostoks, Luke Ramsay, Katrin Mackenzie, et al.Linda Cardle, Prasanna R. Bhat, Mikeal L. Roose, Jan T. Svensson, Nils Stein, Rajeev K. Varshney, David F. Marshall, Andreas Graner, Timothy J. Close, Robbie Waugh posted to ld by jri on 2006-12-20 00:55:02 as along with 1 person maren
	Contrasting Effects of Selection on Sequence Diversity and Linkage Disequilibrium at Two Phytoene Synthase Loci [My Copy] The Plant Cell, Vol. 15, pp. 1795-1806. by K. A. Palaisa, M. Morgante, M. Williams, A. Rafalski posted to no-tag by jri on 2006-11-21 21:58:48 as
	Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep [My Copy] PNAS, Vol. 101, No. 26. (29 June 2004), pp. 9885-9890. by Kelly Palaisa, Michele Morgante, Scott Tingey, Antoni Rafalski posted to no-tag by jri on 2006-11-21 21:54:14 as
	Measures of divergence between populations and the effect of forces that reduce variability [My Copy] Mol Biol Evol, Vol. 15, No. 5. (1 May 1998), pp. 538-543. by B. Charlesworth posted to no-tag by jri on 2006-10-03 23:27:52 as
	Uneven chromosome contraction and expansion in the maize genome [My Copy] Genome Res., Vol. 16, No. 10. (1 October 2006), pp. 1241-1251. by Remy Bruggmann, Arvind K. Bharti, Heidrun Gundlach, et al.Jinsheng Lai, Sarah Young, Ana C. Pontaroli, Fusheng Wei, Georg Haberer, Galina Fuks, Chunguang Du, Christina Raymond, Matt C. Estep, Renyi Liu, Jeffrey L. Bennetzen, Agnes P. Chan, Pablo D. Rabinowicz, John Quackenbush, Brad W. Barbazuk, Rod A. Wing, Bruce Birren, Chad Nusbaum, Steve Rounsley, Klaus F. Mayer, Joachim Messing posted to no-tag by jri on 2006-10-03 07:43:23 as
	High-resolution mapping of the nud locus controlling the naked caryopsis in barley [My Copy] Plant Breeding, Vol. 125, No. 4. (August 2006), pp. 337-342. by Taketa, S., Awayama, et al. T., Amano, S., Sakurai, Y., Ichii, M. posted to no-tag by jri on 2006-09-24 18:38:48 as
	Interrogating multiple aspects of variation in a full resequencing data set to infer human population size changes [My Copy] PNAS, Vol. 102, No. 51. (20 December 2005), pp. 18508-18513. by Benjamin F. Voight, Alison M. Adams, Linda A. Frisse, Yudong Qian, Richard R. Hudson, Anna Di Rienzo posted to abc by jri on 2006-08-31 01:45:04 as along with 4 people renewang joepickrell ryanraaum Xavier
	Chloroplast DNA Variation Confirms a Single Origin of Domesticated Sunflower (Helianthus annuus L.) [My Copy] J Hered, Vol. 97, No. 4. (1 July 2006), pp. 403-408. by David M. Wills, John M. Burke posted to no-tag by jri on 2006-08-03 19:56:24 as
	Copy number variation: New insights in genome diversity [My Copy] Genome Research, Vol. 16, No. 8. (1 August 2006), pp. 949-961. by Jennifer L. Freeman, George H. Perry, Lars Feuk, et al.Richard Redon, Steven A. Mccarroll, David M. Altshuler, Hiroyuki Aburatani, Keith W. Jones, Chris Tyler-Smith, Matthew E. Hurles, Nigel P. Carter, Stephen W. Scherer, Charles Lee posted to no-tag by jri on 2006-08-03 19:55:58 as along with 10 people and 3 groups bertelsen brianb noushin bpb balicea dchughes djkt bioguru2000 debasis jasonflannick Bioinformatics G4ID Genetics-of-Gambling
	The road from Santa Rosalia: A faster tempo of evolution in tropical climates [My Copy] PNAS, Vol. 103, No. 20. (16 May 2006), pp. 7718-7722. by Shane Wright, Jeannette Keeling, Len Gillman posted to no-tag by jri on 2006-07-27 05:19:18 as along with 2 people and 1 group dhodkinson cmm FAB-lab
	A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern [My Copy] Science, Vol. 313, No. 5783. (7 July 2006), pp. 101-104. by Hopi E. Hoekstra, Rachel J. Hirschmann, Richard A. Bundey, Paul A. Insel, Janet P. Crossland posted to standing variation by jri on 2006-07-27 02:52:50 as along with 4 people and 3 groups jbsaltz indigoviolet brant dchughes EisenLab G4ID Genetics-of-Gambling
	The molecular genetic basis of plant adaptation [My Copy] Am. J. Bot., Vol. 93, No. 7. (1 July 2006), pp. 953-962. by Ian M. Ehrenreich, Michael D. Purugganan posted to no-tag by jri on 2006-07-20 19:53:50 as along with 4 people and 1 group nuttpo druvus cmm TaqSys FAB-lab
	Genetic Structure and Evolutionary History of a Diploid Hybrid Pine Pinus densata Inferred from the Nucleotide Variation at Seven Gene Loci [My Copy] Molecular Biology and Evolution, Vol. 23, No. 4. (April 2006), pp. 807-816. by Xiao-Fei Ma, Alfred E. Szmidt, Xiao-Ru Wang posted to no-tag by jri on 2006-07-20 04:09:03 as along with 1 person taka
	Genetic Composition and Diploid Hybrid Speciation of a High Mountain Pine, Pinus densata, Native to the Tibetan Plateau [My Copy] Genetics, Vol. 159, No. 1. (1 September 2001), pp. 337-346. by Xiao-Ru Wang, Alfred E. Szmidt, Outi Savolainen posted to no-tag by jri on 2006-07-20 04:05:58 as
	Amplification of DNA from preserved specimens shows blowflies were preadapted for the rapid evolution of insecticide resistance [My Copy] PNAS, Vol. 103, No. 23. (6 June 2006), pp. 8757-8762. by C. J. Hartley, R. D. Newcomb, R. J. Russell, et al.C. G. Yong, J. R. Stevens, D. K. Yeates, J. La Salle, J. G. Oakeshott posted to no-tag by jri on 2006-07-12 01:51:19 as
	Timing and rate of speciation in Agave (Agavaceae) [My Copy] PNAS, Vol. 103, No. 24. (13 June 2006), pp. 9124-9129. by Sara V. Good-Avila, Valeria Souza, Brandon S. Gaut, Luis E. Eguiarte posted to no-tag by jri on 2006-07-12 01:47:39 as
	Kinetic effects of temperature on rates of genetic divergence and speciation [My Copy] PNAS, Vol. 103, No. 24. (13 June 2006), pp. 9130-9135. by Andrew P. Allen, James F. Gillooly, Van M. Savage, James H. Brown posted to no-tag by jri on 2006-07-12 01:47:16 as along with 2 people and 1 group dhodkinson livingthingdan livingthing
	Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. [My Copy] Genome research, Vol. 16, No. 7. (2 July 2006), pp. 875-884. by Daniel L. Halligan, Peter D. Keightley posted to no-tag by jri on 2006-07-12 01:33:01 as along with 8 people and 3 groups daveGerrard tkmaia caseybrown RMGraze dpollard penka cisevol emptyhb EisenLab Nie cis-regulatory-evolution
	From the Cover: Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa [My Copy] PNAS, Vol. 103, No. 25. (20 June 2006), pp. 9578-9583. by Jason P. Londo, Yu-Chung Chiang, Kuo-Hsiang Hung, Tzen-Yuh Chiang, Barbara A. Schaal posted to no-tag by jri on 2006-07-12 01:31:50 as along with 1 person scryrps
	Two levels of interference in mouse meiotic recombination [My Copy] PNAS, Vol. 103, No. 25. (20 June 2006), pp. 9607-9612. by Esther de Boer, Piet Stam, Axel J. Dietrich, Albert Pastink, Christa Heyting posted to no-tag by jri on 2006-07-12 01:31:30 as
	Why sex and recombination? [My Copy] Science, Vol. 281, No. 5385. (25 September 1998), pp. 1986-1990. by N. H. Barton, B. Charlesworth posted to no-tag by jri on 2006-07-07 21:57:10 as along with 2 people ryang treangen
	Contrasted Polymorphism Patterns in a Large Sample of Populations From the Evolutionary Genetics Model Drosophila simulans [My Copy] Genetics, Vol. 173, No. 2. (1 June 2006), pp. 759-767. by Emmanuelle Baudry, Nicolas Derome, Michele Huet, Michel Veuille posted to no-tag by jri on 2006-07-06 19:29:49 as
	Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda. [My Copy] Genetics (17 March 2006) by Carolina Bartolome, Brian Charlesworth posted to no-tag by jri on 2006-07-06 19:29:31 as along with 2 people and 1 group operon dpollard EisenLab
	Estimating the genome-wide rate of adaptive protein evolution in Drosophila. [My Copy] Genetics (2 April 2006) by John J J. Welch posted to no-tag by jri on 2006-07-06 19:29:20 as along with 3 people and 1 group druvus indigoviolet dpollard EisenLab
	Contrasting Patterns of Introgression at X-Linked Loci Across the Hybrid Zone Between Subspecies of the European Rabbit (Oryctolagus cuniculus) [My Copy] Genetics, Vol. 173, No. 2. (1 June 2006), pp. 919-933. by Armando Geraldes, Nuno Ferrand, Michael W. Nachman posted to no-tag by jri on 2006-07-06 19:28:47 as
	Challenges of detecting directional selection after a bottleneck: lessons from Sorghum bicolor. [My Copy] Genetics (17 March 2006) by Martha T T. Hamblin, Alexandra M M. Casa, Hong Sun, et al.Seth C C. Murray, Andrew H H. Paterson, Charles F F. Aquadro, Stephen Kresovich posted to domestication by jri on 2006-07-06 19:28:29 as along with 2 people balajis jjannink
	Selection Under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region [My Copy] Genetics, Vol. 173, No. 2. (1 June 2006), pp. 975-983. by Kenneth M. Olsen, Ana L. Caicedo, Nicholas Polato, Anna Mcclung, Susan Mccouch, Michael D. Purugganan posted to domestication by jri on 2006-07-06 19:28:14 as
	Effect of Varying Epistasis on the Evolution of Recombination [My Copy] Genetics, Vol. 173, No. 2. (1 June 2006), pp. 589-597. by Roger D. Kouyos, Sarah P. Otto, Sebastian Bonhoeffer posted to recombination by jri on 2006-07-06 19:25:46 as
	Ribosomal Gene Structure, Variation and Inheritance in Maize and Its Ancestors [My Copy] Genetics, Vol. 120, No. 4. (1988), pp. 1125-1136. by E. A. Zimmer, E. R. Jupe, V. Walbot posted to no-tag by jri on 2006-07-06 19:07:43 as
	Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. [My Copy] New Phytol, Vol. 167, No. 1. (Jul 2005), pp. 249-265. by Qihui Zhu, Song Ge posted to 15948847 bibtex-import by jri on 2006-07-06 19:07:43 as
	The selective cause of an ancient adaptation. [My Copy] Science, Vol. 307, No. 5713. (Feb 2005), pp. 1279-1282. by Guoping Zhu, Brian G. Golding, Antony M. Dean posted to 15653464 acetates adaptation alcohol bacteria binding coli dehydrogenase engineering escherichia evolution genetics govt isocitrate kinetics lyase nad nadp oxidation-reduction oxidoreductases phs phylogeny physiological protein research selection sites support us bibtex-import by jri on 2006-07-06 19:07:42 as
	Evolutionary genomics of ecological specialization [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 32. (2004), pp. 11719-24. by S. Zhong, A. Khodursky, D. E. Dykhuizen, A. M. Dean posted to adaptation analysis coligenetics deletion dna duplication ecosystem elements escherichia evolution gene genomicsmethods govt lactulosedeficiencygenetics methylgalactosidesgenetics molecular mutation mutational phs physiologicalgenetics research starvationgenetics support transposable us bibtex-import by jri on 2006-07-06 19:07:41 as
	Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes [My Copy] Nucleic Acids Research, Vol. 31, No. 18. (2003), pp. 5338-5348. by Z. L. Zhang, M. Gerstein posted to alignment dna eukaryotic evolution genomes mutations processed pseudogenes rates sequence bibtex-import by jri on 2006-07-06 19:07:41 as
	Redistribution of gene frequency and changes of genetic variation following a bottleneck in population size [My Copy] Genetics, Vol. 167, No. 3. (2004), pp. 1475-1492. by X. S. Zhang, J. L. Wang, W. G. Hill posted to artificial balance deleterious depression drosophila-melanogaster inbreeding models mutation-selection mutations pleiotropic quantitative selection stabilizing traits tribolium-castaneum variance bibtex-import by jri on 2006-07-06 19:07:41 as
	Impact of population structure, effective bottleneck time, and allele frequency on linkage disequilibrium maps [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 52. (2004), pp. 18075-80. by W. Zhang, A. Collins, J. Gibson, et al.W. J. Tapper, S. Hunt, P. Deloukas, D. R. Bentley, N. E. Morton posted to bibtex-import by jri on 2006-07-06 19:07:41 as
	A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa [My Copy] Journal of Molecular Evolution, Vol. 52, No. 2. (2001), pp. 144-156. by Liqing Zhang, Sergei K. Pond, Brandon S. Gaut posted to adaptation analysis and angiospermae angiosperms barley evolution families genetics gramineae maize monocots monocotyledones multigene phylogenetic plantae plants rice spermatophyta spermatophytes substitutions synonymous vascular wheat bibtex-import by jri on 2006-07-06 19:07:41 as
	Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis) [My Copy] Genetics, Vol. 162, No. 2. (2002), pp. 851-860. by Liqing Zhang, Andrew S. Peek, Detiger Dunams, Brandon S. Gaut posted to ancestor angiospermae angiosperms ascomycetes carbonum cochliobolus dynamics evolutionary fungi genetics gramineae indel mays microorganisms monocots monocotyledones nonneutral nonvascular parviglumis pathogen plantae plants polymorphisms population spermatophyta spermatophytes studies vascular wild zea bibtex-import by jri on 2006-07-06 19:07:40 as
	Does Recombination Shape the Distribution and Evolution of Tandemly Arrayed Genes (TAGs) in the Arabidopsis thaliana Genome? [My Copy] Genome Res., Vol. 13, No. 12. (2003), pp. 2533-2540. by Liqing Zhang, Brandon S. Gaut posted to bibtex-import by jri on 2006-07-06 19:07:40 as
	Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects (vol 12, pg 563, 2003) [My Copy] Molecular Ecology, Vol. 12, No. 6. (2003), pp. 1687-1687. by D. X. Zhang, G. M. Hewitt posted to bibtex-import by jri on 2006-07-06 19:07:40 as
	An evolutionary advantage of haploidy in large yeast populations [My Copy] Science Washington D C, Vol. 299, No. 5606. (2003), pp. 555-558. by Clifford Zeyl, Thomas Vanderford, Michele Carter posted to adaptation adaptive advantage and asexual cycles diploidy eukaryote evolution evolutionary fixation fungi genetics haploidy life microorganisms mutations nonvascular plantae plants population production rate rates studies yeast bibtex-import by jri on 2006-07-06 19:07:40 as

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bibtex-import	576
genetics	195
evolution	144
genetic	138
molecular	132
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3	3
fertilization	3
diploperennis	3
ancestral	3
families	2
viability	2
diseasesgenetics	2
mutation-selection	2
individual	2
element	2
oryza-sativa	2
subdivision	2
plantsgenetics	2
dna-binding	2
tertiary	2
measures	2
multilocus	2
paeoniaceae	2
rdna	2
growth	2
haplotypesgenetics	2
melongena	2
meiotic	2
cucurbita	2
accuracy	2
inference	2
euchromatin	2
hot	2
crossing	2
gymnosperms	2
location	2
external	2
independent	2
durum	2
backcross	2
spatial	2
founder	2
homeotic	2
mammal	2
dna-sequence	2
myrtaceae	2
st	2
demography	2
escherichia-coli	2
use	2
coli	2
linear	2
phylogeography	2
maya	2
antagonistic	2
parameters	2
electrophoresis	2
map	2
success	2
elymus	2
geographic	2
middle	2
estimation	2
historical	2
bottlenecks	2
cotton	2
copy	2
northern	2
migrants	2
frequencies	2
systems	2
criollo	2
constitution	2

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