jsatkosk's library 120 articles Export

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	A whole genome Bayesian scan for adaptive genetic divergence in West African cattle [My Copy] BMC Genomics, Vol. 10, No. 1. (21 November 2009), 550. by Mathieu Gautier, Laurence Flori, Andrea Riebler, et al.Florence Jaffrezic, Denis Laloe, Ivo Gut, Katayoun M. Goudarzi, Jean L. Foulley posted to no-tag by jsatkosk on 2009-11-30 05:40:15 as
	Risk for intentional violent death associated with HLA genotypes: a preliminary survey of deceased American organ donors [My Copy] Genetica, Vol. 137, No. 3. (1 December 2009), pp. 253-264. by David Hollar posted to no-tag by jsatkosk on 2009-11-06 20:21:38 as
	Comparing CNV detection methods for SNP arrays [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 5. (8 September 2009), pp. elp017-366. by Laura Winchester, Christopher Yau, Jiannis Ragoussis posted to no-tag by jsatkosk on 2009-10-09 18:44:12 as along with 2 people daed rdiaz
	Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta) [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000346. by Jeremiah D. Degenhardt, Paola de Candia, Adrien Chabot, et al.Stuart Schwartz, Les Henderson, Binhua Ling, Meredith Hunter, Zhaoshi Jiang, Robert E. Palermo, Michael Katze, Evan E. Eichler, Mario Ventura, Jeffrey Rogers, Preston Marx, Yoav Gilad, Carlos D. Bustamante posted to no-tag by jsatkosk on 2009-09-16 23:03:22 as along with 3 people xingxu djkt jdbowes
	On the causes of outliers in Affymetrix GeneChip data [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 3. (1 May 2009), pp. 199-212. by Graham J. G. Upton, Olivia Sanchez-Graillet, Joanna Rowsell, et al.Jose M. Arteaga-Salas, Neil S. Graham, Maria A. Stalteri, Farhat N. Memon, Sean T. May, Andrew P. Harrison posted to no-tag by jsatkosk on 2009-09-04 18:43:11 as
	Design and Analysis of Admixture Mapping Studies [My Copy] Vol. 74, No. 5. (1 May 2004), pp. 965-978. by C. J. Hoggart, M. D. Shriver, R. A. Kittles, D. G. Clayton, P. M. Mckeigue posted to no-tag by jsatkosk on 2009-08-19 00:57:40 as
	Methods for High-Density Admixture Mapping of Disease Genes [My Copy] American Journal of Human Genetics, Vol. 74 (2004), pp. 979-1000. by Nick Patterson, Neil Hattangadi, Barton Lane, et al.Kirk E. Lohmueller, David A. Hafler, Jorge R. Oksenberg, Stephen J. Hauser, Michael W. Smith, Stephen J. O'Brien, David Altschuler, Mark J. Daly, David Reich posted to no-tag by jsatkosk on 2009-08-19 00:53:34 as
	Mapping by admixture linkage disequilibrium: advances, limitations and guidelines [My Copy] Nat Rev Genet, Vol. 6, No. 8. (12 August 2005), pp. 623-632. by Michael W. Smith, Stephen J. O'Brien posted to no-tag by jsatkosk on 2009-08-19 00:50:08 as along with 3 people and 3 groups cgreal breden ryanraaum CGREL FAB-lab SFUAntibodyResearch
	Prospects for Admixture Mapping of Complex Traits [My Copy] American Journal of Human Genetics, Vol. 76 (2005), pp. 1-7. by Paul M. Mckeigue posted to no-tag by jsatkosk on 2009-08-19 00:49:16 as
	Statistical Tests for Admixture Mapping with Case-Control and Cases-Only Data [My Copy] American Journal of Human Genetics, Vol. 75 (2004), pp. 771-789. by Giovanni Montana, Jonathan K. Pritchard posted to no-tag by jsatkosk on 2009-08-19 00:47:38 as
	A classical likelihood based approach for admixture mapping using EM algorithm [My Copy] Human Genetics, Vol. 120, No. 3. (1 October 2006), pp. 431-445. by Xiaofeng Zhu, Shuanglin Zhang, Hua Tang, Richard Cooper posted to no-tag by jsatkosk on 2009-08-19 00:44:39 as
	Decay of linkage disequilibrium within genes across HGDP-CEPH human samples: most population isolates do not show increased LD [My Copy] BMC Genomics, Vol. 10, No. 1. (28 July 2009), 338. by Elena Bosch, Hafid Laayouni, Carlos M. Suarez, et al.Ferran Casals, Andres M. Estrada, Anna F. Admetlla, Michelle Gardner, Araceli Rosa, Arcadi Navarro, David Comas, Jan Graffelman, Francesc Calafell, Jaume Bertranpetit posted to no-tag by jsatkosk on 2009-08-18 01:00:34 as
	Handling linkage disequilibrium in qualitative trait linkage analysis using dense SNPs: a two-step strategy [My Copy] BMC Genetics, Vol. 10, No. 1. (10 August 2009), 44. by Kelly Cho, Josee Dupuis posted to snp qtl linkage by jsatkosk on 2009-08-17 20:06:19 as
	An ancestry informative marker set for determining continental origin: validation and extension using human genome diversity panels. [My Copy] BMC genetics, Vol. 10, No. 1. (24 July 2009), 39. by Rami Nassir, Roman Kosoy, Chao Tian, et al.Phoebe A. White, Lesley M. Butler, Gabriel Silva, Rick Kittles, Marta E. Alarcon-Riquelme, Peter K. Gregersen, John W. Belmont, Francisco M. De La Vega, Michael F. Seldin posted to aim human by jsatkosk on 2009-07-30 17:42:07 as along with 3 people dchughes daforerog pkonings
	Global discovery of primate-specific genes in the human genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 12019-12024. by Sen-Kwan Tay, Jason Blythe, Leonard Lipovich posted to human primate snp by jsatkosk on 2009-07-29 19:47:01 as along with 2 people clearbluespring bpcusack
	Assembling millions of short DNA sequences using SSAKE [My Copy] Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 500-501. by Rene L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt posted to no-tag by jsatkosk on 2009-07-02 22:39:24 as along with 13 people katholt jbhiatt AaronDarling floatingpoint idoerg caseybrown druvus natstreet azazello iris42 nmohelli Neeperando yoonk
	Assembly reconciliation [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 42-45. by Aleksey V. Zimin, Douglas R. Smith, Granger Sutton, James A. Yorke posted to no-tag by jsatkosk on 2009-07-02 22:38:58 as along with 5 people dakelley orzenil druvus Neeperando GustavoLacerda
	SOAP: short oligonucleotide alignment program [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 713-714. by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang posted to no-tag by jsatkosk on 2009-07-02 22:38:30 as along with 26 people cthachuk hzoltan antonkratz adijr jmanning2k pachorip jmcq jasontsai n00c hpaces skembel maren natstreet druvus orzenil pengchy umit guhjy ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd waszak
	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to no-tag by jsatkosk on 2009-07-02 22:37:58 as along with 8 people darian seb1 torfinnnome orzenil n00c mdimon druvus jmeppley
	A quantitative PCR assay for the assessment of DNA degradation in forensic samples [My Copy] Forensic Science International, Vol. 158, No. 1. (20 April 2006), pp. 14-26. by Katie L. Swango, Mark D. Timken, Mavis D. Chong, Martin R. Buoncristiani posted to degraded dna forensic pcr quantitative by jsatkosk on 2009-07-01 01:42:27 as along with 2 people and 2 groups dchughes N0092968 G4ID Genetics-of-Gambling
	A novel study of Copy Number Variations in Hirschsprung disease using the Multiple Ligation-dependent Probe Amplification (MLPA) technique [My Copy] BMC Medical Genetics, Vol. 10, No. 1. (19 November 2009), 119. by Rocio N. Torres, Raquel Fernandez, Manuel L. Alonso, Guillermo Antinolo, Salud Borrego posted to no-tag by jsatkosk on 2009-11-30 05:38:52 as
	Advantages and limitations of next-generation sequencing technologies: a comparison of electrophoresis and non-electrophoresis methods. [My Copy] Electrophoresis, Vol. 29, No. 23. (3 December 2008), pp. 4618-4626. by Daniel G. Hert, Christopher P. Fredlake, Annelise E. Barron posted to no-tag by jsatkosk on 2009-11-30 05:27:24 as along with 4 people and 1 group jbhiatt pkonings jasontsai malcook SIMR bioinformatics
	Developing a set of ancestry-sensitive DNA markers reflecting continental origins of humans. [My Copy] BMC Genetics, Vol. 10, No. 1. (27 October 2009), 69. by Paula Kersbergen, Kate van Duijn, Ate Kloosterman, Johan den Dunnen, Manfred Kayser, Peter de Knijff posted to no-tag by jsatkosk on 2009-11-06 20:20:28 as along with 3 people and 1 group qayub daforerog Geknitics Journal picks
	Power and sample size for nested analysis of molecular variance [My Copy] Molecular Ecology, Vol. 18, No. 19. (October 2009), pp. 3961-3966. by Benjamin M. Fitzpatrick posted to statistics sequence dna by jsatkosk on 2009-10-05 20:56:29 as
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to snp genotyping bioinformatics by jsatkosk on 2009-10-05 20:55:28 as along with 7 people carolep daforerog djkt shikin dswan rdiaz torfinnnome
	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to snp identification bioinformatics by jsatkosk on 2009-10-05 20:53:58 as along with 7 people jasontsai daforerog djkt operon nuin n00c druvus
	Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 374. by Andreia Amaral, Hendrik J. Megens, Hindrik Kerstens, et al.Henri Heuven, Bert Dibbits, Richard Crooijmans, Johan den Dunnen, Martien Groenen posted to no-tag by jsatkosk on 2009-08-19 23:01:03 as along with 2 people natstreet danmaclean
	Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2074-2075. by Kathryn E. Holt, Yik Y. Teo, Heng Li, et al.Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill posted to no-tag by jsatkosk on 2009-08-18 00:59:44 as along with 7 people and 2 groups jandot stajich djkt guhjy farhat sandfire druvus Mycology iSEEM
	Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine [My Copy] The American Journal of Human Genetics, Vol. 85, No. 2. (14 August 2009), pp. 142-154. by Tracy Tucker, Marco Marra, Jan M. Friedman posted to no-tag by jsatkosk on 2009-08-18 00:58:55 as along with 1 person wendygarnica
	Population genetic models of duplicated genes. [My Copy] Genetica, Vol. 137, No. 1. (1 September 2009), pp. 19-37. by Hideki Innan posted to cnv by jsatkosk on 2009-07-29 19:55:40 as along with 1 person sameersoi
	Whole genome microarray analysis, from neonatal blood cards [My Copy] BMC Genetics, Vol. 10, No. 1. (22 July 2009), 38. by Jill Hardin, Richard Finnell, David Wong, et al.Michael Hogan, Joy Horovitz, Jenny Shu, Gary Shaw posted to no-tag by jsatkosk on 2009-07-29 19:53:24 as
	An assessment of the portability of ancestry informative markers between human populations. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 45. by Sean Myles, Mark Stoneking, Nic Timpson posted to aim diversity human by jsatkosk on 2009-07-29 19:52:26 as along with 1 person daforerog
	Genomic Drift and Evolution of Microsatellite DNAs in Human Populations [My Copy] Mol Biol Evol, Vol. 26, No. 8. (1 August 2009), pp. 1835-1840. by Naoko Takezaki, Masatoshi Nei posted to cnv human microsatellite by jsatkosk on 2009-07-29 19:51:29 as along with 4 people Fuzzer sameersoi nuin aprasad
	Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations [My Copy] Mol Biol Evol, Vol. 26, No. 8. (1 August 2009), pp. 1823-1827. by Jeffrey D. Wall, Kirk E. Lohmueller, Vincent Plagnol posted to admixture diversity human snp by jsatkosk on 2009-07-29 19:50:27 as along with 1 person djkt
	PRKCA: A Positional Candidate Gene for Body Mass Index and Asthma [My Copy] The American Journal of Human Genetics, Vol. 85, No. 1. (10 July 2009), pp. 87-96. by Amy Murphy, Kelan G. Tantisira, Manuel E. Soto-Quirós, et al.Lydiana Avila, Barbara J. Klanderman, Stephen Lake, Scott T. Weiss, Juan C. Celedón posted to asthma by jsatkosk on 2009-07-16 00:14:03 as
	A system for sex determination from degraded DNA: a useful tool for palaeogenetics and conservation genetics of ursids [My Copy] Conservation Genetics by Marie Pagès, Célia Maudet, Eva Bellemain, Pierre Taberlet, Sandrine Hughes, Catherine Hänni posted to degraded forensic identification sex by jsatkosk on 2009-06-25 19:27:16 as
	Parallelization and optimization of genetic analyses in isolation by distance web service [My Copy] BMC Genetics, Vol. 10 (19 June 2009), 28. by Julia Turner, Scott Kelley, James Otto, Faramarz Valafar, Andrew Bohonak posted to algorithm analysis by distance isolation by jsatkosk on 2009-06-25 19:13:28 as
	Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (9 June 2009), 35. by Sanne Nygaard, Anders Jacobsen, Morten Lindow, et al.Jens Eriksen, Eva Balslev, Henrik Flyger, Niels Tolstrup, Soren Moller, Anders Krogh, Thomas Litman posted to disease mirna sequencing by jsatkosk on 2009-06-25 19:10:55 as along with 7 people and 1 group fishtank frohike heliopais padosori mlindow tonamswish samgj microRNA
	An optimal DNA pooling strategy for progressive fine mapping. [My Copy] Genetica (28 May 2008) by Xiao-Fei F. Chi, Xiang-Yang Y. Lou, Mark C. Yang, Qing-Yao Y. Shu posted to dna genotype mapping population snp by jsatkosk on 2009-06-11 22:47:20 as along with 1 person guhjy
	On Estimating the Heterozygosity and Polymorphism Information Content Value [My Copy] Theoretical Population Biology, Vol. 57, No. 3. (May 2000), pp. 265-271. by S. Shete posted to algorithm heterozygosity snp by jsatkosk on 2009-06-11 22:10:42 as
	A centralized gene-based HIV-1 vaccine elicits broad cross-clade cellular immune responses in rhesus monkeys [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (29 July 2008), pp. 10489-10494. by Sampa Santra, Bette T. Korber, Mark Muldoon, et al.Dan H. Barouch, Gary J. Nabel, Feng Gao, Beatrice H. Hahn, Barton F. Haynes, Norman L. Letvin posted to disease gene macaque mulatta vaccine by jsatkosk on 2009-06-11 18:54:23 as
	Inferring population mutation rate and sequencing error rate using the SNP frequency spectrum in a sample of DNA sequences. [My Copy] Molecular biology and evolution (24 March 2009) by Xiaoming Liu, Taylor J J. Maxwell, Eric Boerwinkle, Yun-Xin X. Fu posted to error mutation rate sequencing snp by jsatkosk on 2009-06-11 02:54:04 as along with 4 people djkt sameersoi jmeppley bpcusack
	Potential etiologic and functional implications of genome-wide association loci for human diseases and traits [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 23. (9 June 2009), pp. 9362-9367. by Lucia A. Hindorff, Praveen Sethupathy, Heather A. Junkins, et al.Erin M. Ramos, Jayashri P. Mehta, Francis S. Collins, Teri A. Manolio posted to association disease genome phenotype snp whole by jsatkosk on 2009-06-11 02:52:11 as along with 6 people liqbbi rdiaz guhjy zufar daforerog pkonings
	Appropriate data cleaning methods for genome-wide association study [My Copy] Journal of Human Genetics, Vol. 53, No. 10. (1 October 2008), pp. 886-893. by Taku Miyagawa, Nao Nishida, Jun Ohashi, et al.Ryosuke Kimura, Akihiro Fujimoto, Minae Kawashima, Asako Koike, Tsukasa Sasaki, Hisashi Tanii, Takeshi Otowa, Yoshio Momose, Yasuo Nakahara, Jun Gotoh, Yuji Okazaki, Shoji Tsuji, Katsushi Tokunaga posted to association genome wide by jsatkosk on 2009-06-09 21:16:51 as
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to bioperl microarray snp by jsatkosk on 2009-06-09 20:59:21 as along with 26 people and 2 groups ludaesch kiekyon Thaverkamp Cortel brdwilde daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	The success of the genome-wide association approach: a brief story of a long struggle [My Copy] European Journal of Human Genetics, Vol. aop, No. current. by Ku C. Seng, Chia K. Seng posted to association cnv disease genome haplotype hapmap linkage snp wide by jsatkosk on 2009-06-09 18:52:38 as along with 2 people xingxu guhjy
	SNP discovery in swine by reduced representation and high throughput pyrosequencing [My Copy] BMC Genetics, Vol. 9 (04 December 2008), 81. by Ralph, Dan J. Nonneman posted to discovery pyrosequencing reduced representation snp by jsatkosk on 2009-06-06 00:09:36 as
	Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques [My Copy] Molecular Ecology, Vol. 18, No. 11., pp. 2457-2475. by L. A. U. R. I. E. S. STEVISON, M. I. C. H. A. E. L. H. KOHN posted to flow gene hybridization macaque nuclear primate sequence speciation by jsatkosk on 2009-06-05 22:15:06 as
	Population analysis of large copy number variants and hotspots of human genetic disease. [My Copy] American journal of human genetics, Vol. 84, No. 2. (22 February 2009), pp. 148-161. by Andy Itsara, Gregory M. Cooper, Carl Baker, et al.Santhosh Girirajan, Jun Li, Devin Absher, Ronald M. Krauss, Richard M. Myers, Paul M. Ridker, Daniel I. Chasman, Heather Mefford, Phyllis Ying, Deborah A. Nickerson, Evan E. Eichler posted to cnv disease mutation population by jsatkosk on 2009-06-05 22:11:51 as along with 8 people and 1 group daforerog turnersd sameersoi guhjy Zephyrus pkonings jdbowes psique Roswell Cancer Crosstalk
	Estimating the number of unseen variants in the human genome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 13. (31 March 2009), pp. 5008-5013. by I. Ionita-Laza, C. Lange, N. M Laird posted to algorithm cnv sequencing snp by jsatkosk on 2009-06-05 22:08:56 as along with 5 people giovanni TRHvidsten pkonings guhjy benjaminsb

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snp	40
disease	15
association	14
linkage	14
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genome	11
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indel	1

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