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jtaylor's library [32 articles]

Recent papers added to jtaylor's library.
  • Quantitative Morphological Signatures Define Local Signaling Networks Regulating Cell Morphology
    Science, Vol. 316, No. 5832. (22 June 2007), pp. 1753-1756.
    by Chris Bakal, John Aach, George Church, Norbert Perrimon
    posted to networks systemsgenetics by jtaylor on 2007-06-22 16:55:01 as ** along with 1 person rdiaz
  • Specificity of MAP kinase signaling in yeast differentiation involves transient versus sustained MAPK activation.
    Mol Cell, Vol. 8, No. 3. (September 2001), pp. 683-691.
    by W Sabbagh, LJ Flatauer, AJ Bardwell, L Bardwell
    posted to pmapk pmfp yeast by jtaylor on 2007-06-22 06:29:11 as ** along with 1 person tmt
  • Mathematical models of specificity in cell signaling.
    Biophys J, Vol. 92, No. 10. (15 May 2007), pp. 3425-3441.
    by L Bardwell, X Zou, Q Nie, NL Komarova
    posted to pmapk review yeast by jtaylor on 2007-06-22 06:24:08 as ** along with 3 people and 1 group phoenixzxl ibschwartz arne dIEMoSIRIS
  • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909.
    by Ghia M Euskirchen, Joel S Rozowsky, Chia-Lin Wei, Wah H Lee, Zhengdong D Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B Gerstein, Yijun Ruan, Michael Snyder
    posted to chipchip microfluidics by jtaylor on 2007-06-16 00:17:56 as ** along with 6 people and 4 groups isimpson kengg ghattem epigenetics blobbybirdman idonaldson Bioinformatics Plantandetc UH - Computational Biology BergmanLab
  • Simple switch turns cells embryonic
    Nature, Vol. 447, No. 7145. (06 June 2007), pp. 618-619.
    by David Cyranoski
    posted to stemcells by jtaylor on 2007-06-12 00:19:07 as **
  • Microfluidic large-scale integration: the evolution of design rules for biological automation.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 213-231.
    by J Melin, SR Quake
    posted to microfluidics by jtaylor on 2007-06-12 00:13:01 as **
  • A high-throughput microfluidic real-time gene expression living cell array.
    Lab Chip, Vol. 7, No. 1. (January 2007), pp. 77-85.
    by KR King, S Wang, D Irimia, A Jayaraman, M Toner, ML Yarmush
    posted to microfluidics pmfp by jtaylor on 2007-06-12 00:02:38 as **
  • A mechanism for cell-cycle regulation of MAP kinase signaling in a yeast differentiation pathway.
    Cell, Vol. 128, No. 3. (9 February 2007), pp. 519-531.
    by SC Strickfaden, MJ Winters, G Ben-Ari, RE Lamson, M Tyers, PM Pryciak
    posted to pmapk by jtaylor on 2007-06-11 23:55:28 as **
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to motifs networks by jtaylor on 2007-06-08 05:00:55 as ** along with 12 people and 1 group hannahrajasingh Borelli jstajic jjray ssb nickluscombe gurkanbebek jayster4 karfunkel blobbybirdman zibuyu maralena EBI-regulation
  • Structure and function of the feed-forward loop network motif.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 11980-11985.
    by S Mangan, U Alon
    posted to motifs networks by jtaylor on 2007-06-08 04:52:42 as ** along with 12 people and 3 groups hannahrajasingh marck camster rklancer korakot zqshen jstajic jjray alexg balicea ddahlem gcalda Philosophy_of_Information dbk-lab Blog_and_Wiki_Research
  • Network motifs: simple building blocks of complex networks.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827.
    by R Milo, S Shen-Orr, S Itzkovitz, N Kashtan, D Chklovskii, U Alon
    posted to motifs networks by jtaylor on 2007-06-08 04:50:40 as ** along with 38 people and 8 groups renatomilani subhacom cmor carlk pbull i-stevenson applesnow shikin camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina GeneGo Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to motifs networks by jtaylor on 2007-06-08 04:42:34 as ** along with 14 people and 3 groups Borelli icases aalibes cmmorel dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Exploration of the Function and Organization of the Yeast Early Secretory Pathway through an Epistatic Miniarray Profile
    Cell, Vol. 123, No. 3. (4 November 2005), pp. 507-519.
    by Maya Schuldiner, Sean R Collins, Natalie J Thompson, Vladimir Denic, Arunashree Bhamidipati, Thanuja Punna, Jan Ihmels, Brenda Andrews, Charles Boone, Jack F Greenblatt
    posted to genetics yeast by jtaylor on 2007-06-05 23:53:22 as ** along with 6 people and 1 group adiel okarsligil balajis nirfriedman cjhall hplatero Bioinformatics
  • The obesity pipeline: current strategies in the development of anti-obesity drugs
    Nature Reviews Drug Discovery, Vol. 5, No. 11., pp. 919-931.
    by Dunstan Cooke, Steve Bloom
    posted to nrd obesity review by jtaylor on 2007-05-25 01:23:31 as **
  • Strains isogenic to S288C used in the yeast genome sequencing programme carry a functional KSS1 gene.
    Curr Genet, Vol. 39, No. 5-6. (July 2001), pp. 291-296.
    by A Morillon, M Springer, P Lesage
    posted to pmapk yeast by jtaylor on 2007-05-24 19:15:19 as **
  • Therapeutic potential of venom peptides.
    Nat Rev Drug Discov, Vol. 2, No. 10. (October 2003), pp. 790-802.
    by RJ Lewis, ML Garcia
    posted to drugdiscovery nrd review by jtaylor on 2007-05-24 02:35:32 as **
  • Single-cell quantification of molecules and rates using open-source microscope-based cytometry
    Nature Methods, Vol. 4, No. 2. (21 January 2007), pp. 175-181.
    by Andrew Gordon, Alejandro Colman-Lerner, Tina E Chin, Kirsten R Benjamin, Richard C Yu, Roger Brent
    posted to microscopy yeast by jtaylor on 2007-05-24 00:19:33 as ** along with 1 person cjeans
  • Systematic profiling of cellular phenotypes with spotted cell microarrays reveals mating-pheromone response genes.
    Genome Biol, Vol. 7, No. 1. (2006)
    by R Narayanaswamy, W Niu, AD Scouras, GT Hart, J Davies, AD Ellington, VR Iyer, EM Marcotte
    posted to pmapk pmfp yeast by jtaylor on 2007-05-22 17:12:08 as ** along with 1 person tmt
  • MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast
    Nature (18 February 2007)
    by Saurabh Paliwal, Pablo A Iglesias, Kyle Campbell, Zoe Hilioti, Alex Groisman, Andre Levchenko
    posted to microfluidics pmapk yeast by jtaylor on 2007-05-22 17:07:02 as ** along with 1 person tmt
  • A modelling approach to quantify dynamic crosstalk between the pheromone and the starvation pathway in baker's yeast
    FEBS Journal, Vol. 273, No. 15. (August 2006), pp. 3520-3533.
    by Schaber, Jorg, Kofahl, Bente, Kowald, Axel, Klipp, Edda
    posted to modeling pmapk yeast by jtaylor on 2007-05-22 17:03:00 as ** along with 2 people and 1 group arne pmendes dIEMoSIRIS
  • Transcript mapping with high-density oligonucleotide tiling arrays
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1963-1970.
    by Wolfgang Huber, Joern Toedling, Lars M Steinmetz
    posted to method yeast by jtaylor on 2007-04-02 18:46:12 as ** along with 2 people ptrobajo johncumbers
  • I am what I eat and I eat what I am: acquisition of bacterial genes by giant viruses.
    Trends Genet, Vol. 23, No. 1. (January 2007), pp. 10-15.
    by J Filée, P Siguier, M Chandler
    posted to microbial biology by jtaylor on 2007-01-20 23:37:14 as **
  • Stochastic protein expression in individual cells at the single molecule level
    Nature, Vol. 440, No. 7082., pp. 358-362.
    by Long Cai, Nir Friedman, Sunney X Xie
    posted to microfluidics moleculedetection singlecell by jtaylor on 2007-01-07 21:32:25 as ** along with 12 people and 1 group jjray austin okarsligil ccots bayesian wnpx balabu cottrell jiyu mmt margaritis cjeans Bioinformatics
  • Regulated cell-to-cell variation in a cell-fate decision system
    Nature (18 September 2005)
    by Alejandro Colman-Lerner, Andrew Gordon, Eduard Serra, Tina Chin, Orna Resnekov, Drew Endy, Gustavo C Pesce, Roger Brent
    posted to biology modeling pmapk systemsbiology by jtaylor on 2006-12-07 16:46:56 as ** along with 8 people rklancer monod imouthesmp biosv balabu jiyu johncumbers margaritis
  • A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes.
    Yeast, Vol. 21, No. 11. (August 2004), pp. 947-962.
    by C Janke, MM Magiera, N Rathfelder, C Taxis, S Reber, H Maekawa, A Moreno-Borchart, G Doenges, E Schwob, E Schiebel, M Knop
    posted to biology genetics method yeast by jtaylor on 2006-11-10 23:40:40 as **
  • Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output
    PNAS, Vol. 103, No. 11. (14 March 2006), pp. 4180-4185.
    by Yigal D Nochomovitz, Hao Li
    posted to bns networks by jtaylor on 2006-11-07 19:04:02 as ** along with 1 person dbikard
  • Synthetic biology--putting engineering into biology
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799.
    by Matthias Heinemann, Sven Panke
    posted to biology review synthetic by jtaylor on 2006-11-05 23:02:57 as *** along with 5 people and 2 groups aalibes marcius Freecat fishtank karfunkel BioinfoCIPF SGU-CIPF
  • The Consensus Coding Sequences of Human Breast and Colorectal Cancers
    Science (7 September 2006), 1133427.
    by Tobias Sjoblom, Sian Jones, Laura D Wood, Williams D Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D Markowitz, Joseph Willis, Dawn Dawson, James K Willson, Adi F Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H Park, Kurtis E Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W Kinzler, Victor E Velculescu
    posted to cancer sequencing by jtaylor on 2006-10-17 02:15:01 as ** along with 18 people and 1 group frohike chrisamiller mingzhi aalibes bicko jfr tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta emb51 ramensky massivemayhem cerami xingxu EBI-regulation
  • Regulation of mating and filamentation genes by two distinct Ste12 complexes in Saccharomyces cerevisiae.
    Mol Cell Biol, Vol. 26, No. 13. (July 2006), pp. 4794-4805.
    by S Chou, S Lane, H Liu
    posted to fmapk pmapk by jtaylor on 2006-10-16 03:07:55 as *** along with 1 person tmt
  • Dynamic Studies of Scaffold-dependent Mating Pathway in Yeast.
    Biophys J (15 September 2006)
    by Danying Shao, Wen Zheng, Wenjun Qiu, Qi Ouyang, Chao Tang
    posted to modeling pmapk by jtaylor on 2006-10-16 02:26:11 as read along with 1 person tmt
  • Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae.
    Yeast, Vol. 15, No. 14. (October 1999), pp. 1541-1553.
    by AL Goldstein, JH McCusker
    posted to genetics method yeast by jtaylor on 2006-10-16 00:15:07 as read along with 1 person blaine_5
  • notes Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
    Yeast, Vol. 14, No. 10. (July 1998), pp. 953-961.
    by MS Longtine, A McKenzie, DJ Demarini, NG Shah, A Wach, A Brachat, P Philippsen, JR Pringle
    posted to genetics method yeast by jtaylor on 2006-10-15 23:07:02 as read
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