Dali/FSSP classification of three-dimensional protein folds. Export

@article{citeulike:3058487, abstract = {The FSSP database presents a continuously updated structural classification of three-dimensional protein folds. It is derived using an automatic structure comparison program (Dali) for the all-against-all comparison of over 6000 three-dimensional coordinate sets in the Protein Data Bank (PDB). Sequence-related protein families are covered by a representative set of 813 protein chains. Hierachical clustering based on structural similarities yields a fold tree that defines 253 fold classes. For each representative protein chain, there is a database entry containing structure-structure alignments with its structural neighbours in the PDB. The database is accessible online through World Wide Web browsers and by anonymous ftp (file transfer protocol). The overview of fold space and the individual data sets provide a rich source of information for the study of both divergent and convergent aspects of molecular evolution, and define useful test sets and a standard of truth for assessing the correctness of sequence-sequence or sequence-structure alignments.}, address = {European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK.}, author = {Holm, L. and Sander, C.}, citeulike-article-id = {3058487}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/9016542}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=9016542}, day = {1}, issn = {0305-1048}, journal = {Nucleic acids research}, keywords = {fold\_classification, fssp}, month = {January}, number = {1}, pages = {231--234}, posted-at = {2008-07-30 08:14:56}, priority = {2}, title = {Dali/FSSP classification of three-dimensional protein folds.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/9016542}, volume = {25}, year = {1997} }

TY - JOUR ID - citeulike:3058487 L3 - citeulike-article-id:3058487 N2 - The FSSP database presents a continuously updated structural classification of three-dimensional protein folds. It is derived using an automatic structure comparison program (Dali) for the all-against-all comparison of over 6000 three-dimensional coordinate sets in the Protein Data Bank (PDB). Sequence-related protein families are covered by a representative set of 813 protein chains. Hierachical clustering based on structural similarities yields a fold tree that defines 253 fold classes. For each representative protein chain, there is a database entry containing structure-structure alignments with its structural neighbours in the PDB. The database is accessible online through World Wide Web browsers and by anonymous ftp (file transfer protocol). The overview of fold space and the individual data sets provide a rich source of information for the study of both divergent and convergent aspects of molecular evolution, and define useful test sets and a standard of truth for assessing the correctness of sequence-sequence or sequence-structure alignments. IS - 1 JF - Nucleic acids research SN - 0305-1048 AD - European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK. EP - 234 TI - Dali/FSSP classification of three-dimensional protein folds. VL - 25 SP - 231 KW - fold_classification KW - fssp AU - Holm, L AU - Sander, C PY - 1997/01/01/ UR - http://view.ncbi.nlm.nih.gov/pubmed/9016542 ER -