jwhitney's library 28 articles Export

	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly by jwhitney on 2009-11-19 17:28:08 as along with 42 people and 3 groups ajsferreira vplagnol bedo cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Force-Directed Edge Bundling for Graph Visualization [My Copy] Computer Graphics Forum, Vol. 28, No. 3. (June 2009), pp. 983-990. by Danny Holten, Jarke J. van Wijk posted to graph edge-bundling drawing by jwhitney on 2009-11-19 17:26:14 as
	What are decision trees? [My Copy] Nature biotechnology, Vol. 26, No. 9. (September 2008), pp. 1011-1013. by Carl Kingsford, Steven L. Salzberg posted to decision review trees by jwhitney on 2009-07-12 19:24:08 as along with 19 people and 2 groups guhjy megraw daforerog svozil Yanno A_Olympia jfr yzlab ptrobajo chrisamiller markusd druvus Zephyrus brianb dullhunk sjcockell zwang GeeSharpMinor neils logics of knowledge Roswell Cancer Crosstalk
	Discovering Functional Communities in Dynamical Networks [My Copy] by Cosma R. Shalizi1, Marcelo F. Camperi, Kristina L. Klinkner posted to clustering dynamic graph module network by jwhitney on 2009-07-12 18:08:36 as
	Graph layout adjustment strategies [My Copy] Graph Drawing (1996), pp. 487-499. by Margaret Storey, Hausi Müller posted to graph layout by jwhitney on 2009-06-10 20:03:16 as
	A logic-based diagram of signalling pathways central to macrophage activation. [My Copy] BMC systems biology, Vol. 2, No. 1. (2008) by Sobia Raza, Kevin A. Robertson, Paul A. Lacaze, et al.David Page, Anton J. Enright, Peter Ghazal, Tom C. Freeman posted to graph layout pathway by jwhitney on 2009-05-15 19:10:04 as along with 3 people and 1 group ptrobajo AlexanderPico cmzmasek ConklinLab
	Computational prediction of protein-protein interactions. [My Copy] Molecular biotechnology, Vol. 38, No. 1. (20 January 2008), pp. 1-17. by Lucy Skrabanek, Harpreet K. Saini, Gary D. Bader, Anton J. Enright posted to interaction prediction protein visualization by jwhitney on 2009-05-14 21:38:27 as along with 7 people iris_2001 jperkins kgutwin kiekyon ruvido guhjy penpen926
	Construction, visualisation, and clustering of transcription networks from microarray expression data. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 2032-2042. by Tom C. Freeman, Leon Goldovsky, Markus Brosch, et al.Stijn van Dongen, Pierre Mazière, Russell J. Grocock, Shiri Freilich, Janet Thornton, Anton J. Enright posted to clustering graph layout by jwhitney on 2009-05-14 21:25:54 as along with 9 people ptrobajo nolodie guhjy jfr sebastien_vigneau giovanni shigepong heliopais waszak
	From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions [My Copy] Mol Syst Biol, Vol. 4 (15 July 2008) by Igor Ulitsky, Tomer Shlomi, Martin Kupiec, Ron Shamir posted to algorithm emap graph module by jwhitney on 2009-03-19 23:07:12 as along with 7 people TheresaNiederberger dakelley nzm chasmand zwang roys ptrobajo
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to clustering graph network review by jwhitney on 2009-03-19 21:21:39 as along with 24 people and 1 group cerca ptrobajo kiekyon AbnerCYH roys dragonrez Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	Revealing Biological Modules via Graph Summarization [My Copy] Journal of Computational Biology, Vol. 16, No. 2. (2009), pp. 253-264. by Saket Navlakha, Michael C. Schatz, Carl Kingsford posted to clustering complex mdl by jwhitney on 2009-03-19 21:20:46 as along with 2 people jfr dakelley
	Multiple Dimension Levenshtein Edit Distance Calculations for Evaluating Automatic Speech Recognition Systems During Simultaneous Speech [My Copy] posted to algorithm alignment dag by jwhitney on 2009-02-11 16:25:47 as
	DAG alignment on arxiv [My Copy] posted to algorithm alignment dag by jwhitney on 2009-02-11 16:18:10 as
	Correlation Clustering with Partial Information [My Copy] Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (2003), pp. 71-80. by Erik D. Demaine, Nicole Immorlica posted to clustering graph by jwhitney on 2008-12-03 19:02:59 as
	Building Problem Solvers - The MIT Press [My Copy] by Kenneth D. Forbus, Johan de Kleer posted to algorithm search solver by jwhitney on 2008-11-24 00:29:43 as
	An Efficient Implementation of Sugiyama’s Algorithm for Layered Graph Drawing [My Copy] posted to algorithm graph layout by jwhitney on 2008-10-09 18:01:12 as
	Graph Drawing by High Dimensional Embedding [My Copy] In Proceedings Graph Drawing 2002 (GD'02) (2002) by David Harel, Yehuda Koren posted to drawing graph by jwhitney on 2008-08-05 04:07:13 as
	Comparing Clusterings [My Copy] by Marina Meila posted to graph information_theory network by jwhitney on 2008-07-27 04:52:11 as along with 2 people iansimon AbnerCYH
	Information-theoretic approach to network modularity [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 4. (2005) by Etay Ziv, Manuel Middendorf, Chris H. Wiggins posted to modularity network by jwhitney on 2008-07-27 04:44:50 as along with 1 person carlk
	An information-theoretic framework for resolving community structure in complex networks — PNAS [My Copy] posted to graph information_theory by jwhitney on 2008-07-27 04:42:54 as
	Energy-Based Hierarchical Edge Clustering of Graphs [My Copy] Visualization Symposium, 2008. PacificVIS '08. IEEE Pacific In Visualization Symposium, 2008. PacificVIS '08. IEEE Pacific (2008), pp. 55-61. by Hong Zhou, Xiaoru Yuan, Weiwei Cui, Huamin Qu, Baoquan Chen posted to drawing graph by jwhitney on 2008-06-23 22:15:13 as
	A Fast Multi-Scale Method for Drawing Large Graphs [My Copy] In Graph Drawing: 8th International Symposium (GD'00) (2000), pp. 183-196. by David Harel, Yehuda Koren posted to drawing graph by jwhitney on 2008-06-23 21:39:05 as along with 1 person heap
	Ecient Identification of Overlapping [My Copy] by Communities J. Baumes posted to clustering graph overlapping by jwhitney on 2008-06-23 21:27:21 as along with 1 person scis0000001
	Experiments on Graph Clustering Algorithms [My Copy] by Ulrik B. Marco posted to clustering graph by jwhitney on 2008-06-23 21:25:58 as along with 5 people and 1 group donade zqshen mmartin maralena AbnerCYH GraphVis
	SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. [My Copy] Genome research, Vol. 17, No. 11. (November 2007), pp. 1697-1706. by J. C. Dohm, C. Lottaz, T. Borodina, H. Himmelbauer posted to assembly short-read by jwhitney on 2008-04-29 02:35:25 as along with 16 people and 2 groups operon n00c robsyme dakelley acn druvus nmohelli natstreet timflutre stajich ghattem azazello GustavoLacerda niallhaslam flexer iris42 DeNovoAssembly-SIMR Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to algorithm assembly by jwhitney on 2008-04-29 02:17:15 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to algorithm assembly graph by jwhitney on 2008-04-29 02:14:01 as along with 14 people and 2 groups aheilbut jengeldk n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello Philosophy_of_Information Blog_and_Wiki_Research
	Motivating Cooperation on Peer to Peer Networks [My Copy] User Modeling 2003 (2003), pp. 148-148. by Helen Bretzke, Julita Vassileva posted to peer to by jwhitney on 2008-04-29 02:12:28 as

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graph	17
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assembly	4
drawing	4
layout	4
network	4
alignment	2
dag	2
information_theory	2
module	2
review	2
complex	1
decision	1
dynamic	1
edge-bundling	1
emap	1
interaction	1
mdl	1
modularity	1
overlapping	1
pathway	1
peer	1
prediction	1
protein	1
search	1
short-read	1
solver	1
to	1
trees	1
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jwhitney's library 28 articles Export

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