Crystal structure of catalase HPII from Escherichia coli. Export

@article{citeulike:920684, abstract = {BACKGROUND: Catalase is a ubiquitous enzyme present in both the prokaryotic and eukaryotic cells of aerobic organisms. It serves, in part, to protect the cell from the toxic effects of small peroxides. Escherichia coli produces two catalases, HPI and HPII, that are quite distinct from other catalases in physical structure and catalytic properties. HPII, studied in this work, is encoded by the katE gene, and has been characterized as an oligomeric, monofunctional catalase containing one cis-heme d prosthetic group per subunit of 753 residues. RESULTS: The crystal structure of catalase HPII from E. coli has been determined to 2.8 A resolution. The asymmetric unit of the crystal contains a whole molecule, which is a tetramer with accurate 222 point group symmetry. In the model built, that includes residues 27-753 and one heme group per monomer, strict non-crystallographic symmetry has been maintained. The crystallographic agreement R-factor is 20.1\% for 58,477 reflections in the resolution shell 8.0-2.8 A. CONCLUSIONS: Despite differences in size and chemical properties, which were suggestive of a unique catalase, the deduced structure of HPII is related to the structure of catalase from Penicillium vitale, whose sequence is not yet known. In particular, both molecules have an additional C-terminal domain that is absent in the bovine catalase. This extra domain contains a Rossmann fold but no bound nucleotides have been detected, and its physiological role is unknown. In HPII, the heme group is modified to a heme d and inverted with respect to the orientation determined in all previously reported heme catalases. HPII is the largest catalase for which the structure has been determined to almost atomic resolution.}, address = {Departamento de Ingenier\'{\i}a Qu\'{\i}mica, Universidad Polit\'{e}cnica de Catalun\~{n}a, Barcelona, Spain.}, author = {Bravo, J. and Verdaguer, N. and Tormo, J. and Betzel, C. and Switala, J. and Loewen, P. C. and Fita, I.}, citeulike-article-id = {920684}, citeulike-linkout-0 = {http://view.ncbi.nlm.nih.gov/pubmed/7663946}, citeulike-linkout-1 = {http://www.hubmed.org/display.cgi?uids=7663946}, day = {15}, issn = {0969-2126}, journal = {Structure}, keywords = {catalase}, month = {May}, number = {5}, pages = {491--502}, posted-at = {2006-10-31 17:39:36}, priority = {2}, title = {Crystal structure of catalase HPII from Escherichia coli.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/7663946}, volume = {3}, year = {1995} }

TY - JOUR ID - citeulike:920684 L3 - citeulike-article-id:920684 N2 - BACKGROUND: Catalase is a ubiquitous enzyme present in both the prokaryotic and eukaryotic cells of aerobic organisms. It serves, in part, to protect the cell from the toxic effects of small peroxides. Escherichia coli produces two catalases, HPI and HPII, that are quite distinct from other catalases in physical structure and catalytic properties. HPII, studied in this work, is encoded by the katE gene, and has been characterized as an oligomeric, monofunctional catalase containing one cis-heme d prosthetic group per subunit of 753 residues. RESULTS: The crystal structure of catalase HPII from E. coli has been determined to 2.8 A resolution. The asymmetric unit of the crystal contains a whole molecule, which is a tetramer with accurate 222 point group symmetry. In the model built, that includes residues 27-753 and one heme group per monomer, strict non-crystallographic symmetry has been maintained. The crystallographic agreement R-factor is 20.1% for 58,477 reflections in the resolution shell 8.0-2.8 A. CONCLUSIONS: Despite differences in size and chemical properties, which were suggestive of a unique catalase, the deduced structure of HPII is related to the structure of catalase from Penicillium vitale, whose sequence is not yet known. In particular, both molecules have an additional C-terminal domain that is absent in the bovine catalase. This extra domain contains a Rossmann fold but no bound nucleotides have been detected, and its physiological role is unknown. In HPII, the heme group is modified to a heme d and inverted with respect to the orientation determined in all previously reported heme catalases. HPII is the largest catalase for which the structure has been determined to almost atomic resolution. IS - 5 JF - Structure SN - 0969-2126 AD - Departamento de Ingeniería Química, Universidad Politécnica de Catalunña, Barcelona, Spain. EP - 502 TI - Crystal structure of catalase HPII from Escherichia coli. VL - 3 SP - 491 KW - catalase AU - Bravo, J AU - Verdaguer, N AU - Tormo, J AU - Betzel, C AU - Switala, J AU - Loewen, PC AU - Fita, I PY - 1995/05/15/ UR - http://view.ncbi.nlm.nih.gov/pubmed/7663946 ER -