CiteULike: jwm's xtal_model_building [15 articles]

PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.

Acta crystallographica. Section D, Biological crystallography, Vol. 60, No. Pt 8. (01 August 2004), pp. 1355-1363.

by Alexander W. Schüttelkopf, Daan M. van Aalten

posted to xtal_model_building xtal_software by jwm on 2009-03-11 19:22:26 as

along with 3 people oceanwind dgruiz simone

The matching of physical models to three-dimensional electron-density maps: a simple optical device.

J Mol Biol, Vol. 37, No. 1. (14 October 1968), pp. 225-230.

by F. M. Richards

posted to xtal_methods xtal_model_building by jwm on 2007-10-25 09:57:55 as

Model bias in macromolecular crystal structures

Acta Cryst., Vol. A48 (1992), pp. 851-858.

by A. Hodel, S. H. Kim, A. T. Brünger

posted to xtal_model_building xtal_refinement xtal_software xtal_methods by jwm on 2007-05-18 16:52:21 as

along with 2 groups Radiation_Damage Stressosome

How many water molecules can be detected by protein crystallography?

Acta Crystallogr D Biol Crystallogr, Vol. 55, No. Pt 2. (February 1999), pp. 479-483.

by O. Carugo, D. Bordo

posted to xtal_methods xtal_model_building by jwm on 2007-05-17 16:28:22 as

along with 2 groups Radiation_Damage Stressosome

Using known substructures in protein model building and crystallography.

EMBO J, Vol. 5, No. 4. (April 1986), pp. 819-822.

by T. A. Jones, S. Thirup

posted to xtal_model_building xtal_methods by jwm on 2007-02-05 13:46:43 as

along with 1 person and 2 groups dgront Radiation_Damage Stressosome

Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation.

Biochemistry, Vol. 41, No. 31. (6 August 2002), pp. 9863-9872.

by H. S. Gill, G. M. Pfluegl, D. Eisenberg

posted to xtal_methods xtal_model_building xtal_refinement xtal_structure by jwm on 2007-02-05 10:58:40 as

along with 2 groups Radiation_Damage Stressosome

Crystallographic refinement of ligand complexes.

Acta crystallographica. Section D, Biological crystallography, Vol. 63, No. Pt 1. (January 2007), pp. 94-100.

by Gerard J. Kleywegt

posted to xtal_model_building xtal_refinement by jwm on 2007-01-23 11:31:40 as

along with 2 groups Radiation_Damage Stressosome

Structural aspects of metal liganding to functional groups in proteins.

Adv Protein Chem, Vol. 42 (1991), pp. 1-76.

by J. P. Glusker

posted to x-ray xtal_model_building by jwm on 2007-01-02 18:50:34 as

along with 2 groups Radiation_Damage Stressosome

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.

J Mol Biol, Vol. 285, No. 4. (29 January 1999), pp. 1735-1747.

by J. M. Word, S. C. Lovell, J. S. Richardson, D. C. Richardson

posted to structural_bioinformatics xtal_model_building xtal_software xtal_structure by jwm on 2006-09-06 15:59:50 as

along with 4 people and 2 groups dfgreen kaarsinogen j3xucite blackbart Radiation_Damage Stressosome

Small revisions to predicted distances around metal sites in proteins

Acta Crystallographica Section D: Biological Crystallography, Vol. 62, No. 6. (01 June 2006), pp. 678-682.

by Harding, M.M.

posted to structure_validation x-ray xafs xtal_model_building xtal_refinement by jwm on 2006-07-04 15:31:42 as

along with 2 groups Radiation_Damage Stressosome

Fast Fourier feature recognition.

Acta Crystallogr D Biol Crystallogr, Vol. 57, No. Pt 10. (October 2001), pp. 1435-1444.

by K. Cowtan

posted to xtal_methods xtal_model_building xtal_software by jwm on 2006-04-17 14:20:00 as

along with 2 groups Radiation_Damage Stressosome

TLSMD web server for the generation of multi-group TLS models

Journal of Applied Crystallography, Vol. 39 (2006), pp. 109-111.

by J. Painter, E. A. Merritt

posted to xtal_methods xtal_model_building xtal_refinement xtal_software by jwm on 2006-02-17 17:26:11 as

along with 2 groups Radiation_Damage Stressosome

The penultimate rotamer library.

Proteins, Vol. 40, No. 3. (15 August 2000), pp. 389-408.

by S. C. Lovell, J. M. Word, J. S. Richardson, D. C. Richardson

posted to xtal_software xtal_refinement xtal_model_building structural_bioinformatics rotamers by jwm on 2006-02-15 10:08:49 as

along with 1 person and 2 groups blackbart Radiation_Damage Stressosome

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

J Mol Biol, Vol. 218, No. 1. (5 March 1991), pp. 183-194.

by L. Holm, C. Sander

posted to xtal_software xtal_model_building xtal_methods by jwm on 2005-08-16 13:24:51 as

along with 3 people and 2 groups wouterboomsma j3xucite dgront Radiation_Damage Stressosome

Coot: model-building tools for molecular graphics

Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2126-2132.

by P. Emsley, K. Cowtan

posted to xtal_methods xtal_model_building xtal_refinement xtal_software by jwm on 2005-08-08 18:07:35 as

along with 3 people and 2 groups miorel martainn robert Radiation_Damage Stressosome

	PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 60, No. Pt 8. (01 August 2004), pp. 1355-1363. by Alexander W. Schüttelkopf, Daan M. van Aalten posted to xtal_model_building xtal_software by jwm on 2009-03-11 19:22:26 as along with 3 people oceanwind dgruiz simone
	The matching of physical models to three-dimensional electron-density maps: a simple optical device. [My Copy] J Mol Biol, Vol. 37, No. 1. (14 October 1968), pp. 225-230. by F. M. Richards posted to xtal_methods xtal_model_building by jwm on 2007-10-25 09:57:55 as
	Model bias in macromolecular crystal structures [My Copy] Acta Cryst., Vol. A48 (1992), pp. 851-858. by A. Hodel, S. H. Kim, A. T. Brünger posted to xtal_model_building xtal_refinement xtal_software xtal_methods by jwm on 2007-05-18 16:52:21 as along with 2 groups Radiation_Damage Stressosome
	How many water molecules can be detected by protein crystallography? [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 55, No. Pt 2. (February 1999), pp. 479-483. by O. Carugo, D. Bordo posted to xtal_methods xtal_model_building by jwm on 2007-05-17 16:28:22 as along with 2 groups Radiation_Damage Stressosome
	Using known substructures in protein model building and crystallography. [My Copy] EMBO J, Vol. 5, No. 4. (April 1986), pp. 819-822. by T. A. Jones, S. Thirup posted to xtal_model_building xtal_methods by jwm on 2007-02-05 13:46:43 as along with 1 person and 2 groups dgront Radiation_Damage Stressosome
	Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation. [My Copy] Biochemistry, Vol. 41, No. 31. (6 August 2002), pp. 9863-9872. by H. S. Gill, G. M. Pfluegl, D. Eisenberg posted to xtal_methods xtal_model_building xtal_refinement xtal_structure by jwm on 2007-02-05 10:58:40 as along with 2 groups Radiation_Damage Stressosome
	Crystallographic refinement of ligand complexes. [My Copy] Acta crystallographica. Section D, Biological crystallography, Vol. 63, No. Pt 1. (January 2007), pp. 94-100. by Gerard J. Kleywegt posted to xtal_model_building xtal_refinement by jwm on 2007-01-23 11:31:40 as along with 2 groups Radiation_Damage Stressosome
	Structural aspects of metal liganding to functional groups in proteins. [My Copy] Adv Protein Chem, Vol. 42 (1991), pp. 1-76. by J. P. Glusker posted to x-ray xtal_model_building by jwm on 2007-01-02 18:50:34 as along with 2 groups Radiation_Damage Stressosome
	Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. [My Copy] J Mol Biol, Vol. 285, No. 4. (29 January 1999), pp. 1735-1747. by J. M. Word, S. C. Lovell, J. S. Richardson, D. C. Richardson posted to structural_bioinformatics xtal_model_building xtal_software xtal_structure by jwm on 2006-09-06 15:59:50 as along with 4 people and 2 groups dfgreen kaarsinogen j3xucite blackbart Radiation_Damage Stressosome
	Small revisions to predicted distances around metal sites in proteins [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 62, No. 6. (01 June 2006), pp. 678-682. by Harding, M.M. posted to structure_validation x-ray xafs xtal_model_building xtal_refinement by jwm on 2006-07-04 15:31:42 as along with 2 groups Radiation_Damage Stressosome
	Fast Fourier feature recognition. [My Copy] Acta Crystallogr D Biol Crystallogr, Vol. 57, No. Pt 10. (October 2001), pp. 1435-1444. by K. Cowtan posted to xtal_methods xtal_model_building xtal_software by jwm on 2006-04-17 14:20:00 as along with 2 groups Radiation_Damage Stressosome
	TLSMD web server for the generation of multi-group TLS models [My Copy] Journal of Applied Crystallography, Vol. 39 (2006), pp. 109-111. by J. Painter, E. A. Merritt posted to xtal_methods xtal_model_building xtal_refinement xtal_software by jwm on 2006-02-17 17:26:11 as along with 2 groups Radiation_Damage Stressosome
	The penultimate rotamer library. [My Copy] Proteins, Vol. 40, No. 3. (15 August 2000), pp. 389-408. by S. C. Lovell, J. M. Word, J. S. Richardson, D. C. Richardson posted to xtal_software xtal_refinement xtal_model_building structural_bioinformatics rotamers by jwm on 2006-02-15 10:08:49 as along with 1 person and 2 groups blackbart Radiation_Damage Stressosome
	Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors. [My Copy] J Mol Biol, Vol. 218, No. 1. (5 March 1991), pp. 183-194. by L. Holm, C. Sander posted to xtal_software xtal_model_building xtal_methods by jwm on 2005-08-16 13:24:51 as along with 3 people and 2 groups wouterboomsma j3xucite dgront Radiation_Damage Stressosome
	Coot: model-building tools for molecular graphics [My Copy] Acta Crystallographica Section D: Biological Crystallography, Vol. 60, No. 1. (01 December 2004), pp. 2126-2132. by P. Emsley, K. Cowtan posted to xtal_methods xtal_model_building xtal_refinement xtal_software by jwm on 2005-08-08 18:07:35 as along with 3 people and 2 groups miorel martainn robert Radiation_Damage Stressosome

jwm's xtal_model_building [15 articles] Export

jwm's tags

bibtex-import	532
psii	201
xtal_methods	102
protein_design	92
structural_bioinformatics	92
xtal_software	75
crystallization	61
rosetta	54
mn	40
oec	36
radiation_damage	34
phycobilisome	33
exafs	29
phycocyanin	29
protein_engineering	29
bioinformatics	25
psii_site_mutant	23
jwm_author	22
gloeobacter	21
psi	20
ribonucleotide_reductase	20
oec_site_mutant	18
idia	17
stressosome	17
beta_solenoid	16
iron_stress	16
metal_cluster	16
psii_assembly	15
xtal_model_building	15
artificial_photosynthesis	14
psii_chloride	14
psii_exafs	14
protein_docking	13
psii_structure	12
reaction_centre	12
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chloride	11
phycoerythrin	11
psii_biochemistry	11
xtal_refinement	11
cp43	10
metalloenzyme	10
mn_enzyme	10
pas_domain	10
rogue_d1	10
sequence_alignment	10
xtal_structure	10
beta_helix	9
cavities	9
cyt_b559	9
ferritin	9
molecular_dynamics	9
molecular_replacement	9
rotamers	9
xenon	9
allophycocyanin	8
bacterioferritin	8
b_subtilis	8
cytochrome_c_oxidase	8
em_methods	8
genome	8
model_building	8
photosynthesis	8
psb27	8
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structure	8
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oxygen_channel	7
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evolution	4
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hydrogenase	4
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phylogeny	4
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